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Report for Sequence Feature Glyma04g40730

Feature Type:gene_model
Chromosome:Gm04
Start:46680911
stop:46690250
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma04g40730
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G03810AT Annotation by Michelle Graham. TAIR10: O-fucosyltransferase family protein | chr3:972190-975901 REVERSE LENGTH=656 SoyBaseE_val: 0ISS
GO:0006499GO-bp Annotation by Michelle Graham. GO Biological Process: N-terminal protein myristoylation SoyBaseN/AISS
GO:0010197GO-bp Annotation by Michelle Graham. GO Biological Process: polar nucleus fusion SoyBaseN/AISS
GO:0048868GO-bp Annotation by Michelle Graham. GO Biological Process: pollen tube development SoyBaseN/AISS
GO:0005794GO-cc Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0016757GO-mf Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring glycosyl groups SoyBaseN/AISS
PF10250PFAM GDP-fucose protein O-fucosyltransferase JGI ISS
UniRef100_G7I284UniRef Annotation by Michelle Graham. Most informative UniRef hit: DUF246 domain-containing protein n=2 Tax=Medicago truncatula RepID=G7I284_MEDTR SoyBaseE_val: 0ISS
UniRef100_I1JYI9UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JYI9_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma04g40730
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g40730
ParalogEvidenceComments
Glyma06g14070 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g40730 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.04g229200 Wm82.a2.v1IGC As supplied by JGI

References for Glyma04g40730
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma04g40730
>Glyma04g40730.1   sequence type=CDS   gene model=Glyma04g40730   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCCATTCTTAACAAAGATAAAATGGGTTGTTCTTTCTGTAGTCACTTTATCTCTGGCATCTATCATCATTCATCTATCTTTGACAAAGTTGTGGACTGTTAACATAGTGCAGTATAAAGCACTACCTAGTCTTCCTGAAGAATTTGGATCTGTGTTGGGTAGACAGGTTATAAAGAATAAGAAGCTATGGGGTTCCATTGAGTCTTTGGAAACATTGCAGCCTAATGCCAACACTAGAAGCAATTATTCTGTTCCAAAGCAGCAGAGCAATGGTTTCTTATATGCAAAAGTTTTTGGTGGGTTTTCAAAGATAAGATCATCGATCCCCGATCTTGTTGCTATTTCTAGACTTTTAAATGCTACTCTTGTCATTCCTGAAATTCAAGAAAGTACTCGCTCAAAAGGAATTAGCTCAAAGTTCAAGAGTTTTTCCTATCTTTATAACGAGGAGCAGTTCATAGCATTTCTAAAAAATGATGTAATCATTGCAAAGAGCCTGCCAGAAAGTTTGATGGAAAGGAGAAGAAGAAATGAATTTCCTACATTTAAGCCCACAAGTTCAGCTTCTCTAAACTTTTACATTAAAGAAATTTTACCAAAGCTAAAGAAATCAAAGGTTATCGGATTAATTATTGCCAATGGTGGAGCTCTGCAGTCAATACTCCCACCTAGCATGGCTGAGATTCAGAGGCTAAGATGCAGGGTTGCTTTCCATGCCCTGCAATTTCGTCCAGAAATTCAAATGCTTGGTCGTCGGATGGTTCACAAGTTAAGAGCATTAGGCCAACCATTCTTGGCATTCCATCCTGGCTTATTGAGAGAAACCTTGGCATACAATGGTTGTGCAGAACTTTTTCAGGATGTACACACTGAACTCATTCAACATCGGAGATCTCGTATGATAAAGGAAGGAGTTCTTAAGGATGAACTGAATGTGGATTCACACTTGCGAAGAGAAAAAGGTCTATGTCCGATCATGCCTGAAGAGGTTGGCATTCTCCTTCGAGTAATGGGTTATCCTGCCAAAACAATCATTTATCTGGCTGGCTCTGAATTATTTGGTGGTCAACGTGCTTTAATTCCTTTGCGATCCATGTTCATCAATACTATGGATCGCACTTCCTTGTGCAGTGAGAAAGAGTTTTCTGACTTGGTTGGACCTGAAACACCTCTTCCTGTAAATAGTTTTCGACCACCTCCTGCAAAAAGTGAGAATGAACTCAAAGAAGAATGGAAGAAGGCTGGTCCTCGGCCTCGGCCCCTTCCCCCACCTCCAGGTAGACCAATTTACCAGCATGAAAAAGAAGGTTGGTATGCTTGGATCACTGAGACCCCTACAGAACCTGATCCTTCCCCTATGGATCTGAGGATGAAAGCACACAGGTTACTTTGGGATGCGCTTGATTACATTGTTTCATTGGAAGCAGATGCCTTCTTTCCTGGATTTAACAATGATGGTAGTGGATGGCCAGATTTTTCAAGCCTTGTCATGGGGCATCGACTGTATGAGACGGCTTCTTTTAGAACATACCGGCCGGACAGGAAAGTTGTTGCGGAACTTTTCAACATGACTCGTGAAAATCTGTACCATCCTAAACATAATTGGACGGTTTTAGTACAGGAACATCTTAACAGAAGTTTGGCTGAAGAAGGCCTCATAAGGCAATCTCTTTTGTCAAAACCTGCAATGTTCCTTTCACATCCACTTCCCGAATGCTCCTGTAGAATTGCTTCAACCAAGGCCACCAATCGTTTCCGAGGTGAGAATGGCCAGGTTCTATATGGAGGCGAAGATATATGCCCCAAATGGATGCAACATGCTAATGACGAAGGTTCATTGGAGAAAGAAGGTAGCAAATCCGAAGATGAAGGGCTGGCAGACTATGAAAGTAATGATTTTGTTGATGAATCTGAATCTGAAAAAAATGGTAGCAAAACCAATCAGACTCCACTCTGGGATCAAGATGAGGAAATGGATCCAAATGACTAA
Predicted protein sequences of Glyma04g40730
>Glyma04g40730.1   sequence type=predicted peptide   gene model=Glyma04g40730   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MPFLTKIKWVVLSVVTLSLASIIIHLSLTKLWTVNIVQYKALPSLPEEFGSVLGRQVIKNKKLWGSIESLETLQPNANTRSNYSVPKQQSNGFLYAKVFGGFSKIRSSIPDLVAISRLLNATLVIPEIQESTRSKGISSKFKSFSYLYNEEQFIAFLKNDVIIAKSLPESLMERRRRNEFPTFKPTSSASLNFYIKEILPKLKKSKVIGLIIANGGALQSILPPSMAEIQRLRCRVAFHALQFRPEIQMLGRRMVHKLRALGQPFLAFHPGLLRETLAYNGCAELFQDVHTELIQHRRSRMIKEGVLKDELNVDSHLRREKGLCPIMPEEVGILLRVMGYPAKTIIYLAGSELFGGQRALIPLRSMFINTMDRTSLCSEKEFSDLVGPETPLPVNSFRPPPAKSENELKEEWKKAGPRPRPLPPPPGRPIYQHEKEGWYAWITETPTEPDPSPMDLRMKAHRLLWDALDYIVSLEADAFFPGFNNDGSGWPDFSSLVMGHRLYETASFRTYRPDRKVVAELFNMTRENLYHPKHNWTVLVQEHLNRSLAEEGLIRQSLLSKPAMFLSHPLPECSCRIASTKATNRFRGENGQVLYGGEDICPKWMQHANDEGSLEKEGSKSEDEGLADYESNDFVDESESEKNGSKTNQTPLWDQDEEMDPND*






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