Glyma04g40680 - SoyBase

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Report for Sequence Feature Glyma04g40680

Feature Type:	gene_model
Chromosome:	Gm04
Start:	46658793
stop:	46661784
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g40680

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G64720	AT	Annotation by Michelle Graham. TAIR10: Polyketide cyclase/dehydrase and lipid transport superfamily protein \| chr1:24046887-24048537 REVERSE LENGTH=385	SoyBase	E_val: 8.00E-169	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0005773	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: vacuole	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
KOG2761	KOG	START domain-containing proteins involved in steroidogenesis/phosphatidylcholine transfer	JGI		ISS
PTHR19308	Panther	PHOSPHATIDYLCHOLINE TRANSFER PROTEIN	JGI		ISS
UniRef100_B9RYW5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Phosphatidylcholine transfer protein, putative n=1 Tax=Ricinus communis RepID=B9RYW5_RICCO	SoyBase	E_val: 1.00E-175	ISS
UniRef100_I1JYI4	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JYI4_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma04g40680

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g40680

Paralog	Evidence	Comments
Glyma06g14120	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g40680 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g228700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g40680

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma04g40680

Limit To All Plant Sequences

>Glyma04g40680.1   sequence type=CDS   gene model=Glyma04g40680   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTTTTGTCACAGTCTTTCTACGATATGTTGGAGAACCCTGCAATATTGGGTCTGTGCACAGTTATTGGAATGCTTTTTAGTCCCCTGTGGGTAACATTTTTCTTTGGTGTCATCGTTGGATGGTTGTGGAAACCGAAATGGGCGAGGTTGGGGGAAAAAAAATTGGCGACTACCCTCGCCAAATCCTTAGATTTTGCCTCACCCTCCTCGGCTTCTTCGCCTTCTAAGTTTCCAGTGTCTCCTATGAAGAGTTGTTCTTCCTCTCCTTGCCTGAATTCCATTAAAATGCTACCTCCAAACCCTGAATCTTTGCTCCTCAAAAAAGGGGTGGATAAAAAGGCTTCCTCATCATCCTCACCCGTGAAATTTGCAAGTTCCGTCAGTTCACCCAAATCCTGCGAGGAAACTTCTGAGGCTGTGACAATGGCGGATTTACATCATCTATGGCAGCTTGTGGAGGAGAAAGATGGAGGTCTCCCTTGGATTCAGATGATGGATCGTTCTACCCCCACCATGAGTTACAAAGCATGGCGTAGAGAACCAAAGGATGGTCCTCCCCAATATCGAAGCAGCACTATTTTTGAAGATGCTACCCCTGAGATGGTGAGGGACTTGTTTTGGGATGATGAGTTCCGACCGAGATGGGATGACATGCTTGCATCCTCCTCAATCATTGAAGAGTGTCCCACTACTGGTACCATGAAAGTGCAGTGGATACGGAAGTTTCCCTTTTTCTGTAAAGATAGAGAATACATAATTGGTCGGAGAATCTGGGAATCTGGAAGGCATTACTATTGTGTGACTAAGGGAGTAGATTGTCCTTTAATCCCTAAAAAAGATAAACCTAGACGTGTTGATGTGTACTACTCTAGTTGGTGCATTAGAGCAGTGGAATCAAATAGAGGTAATGGCCAGTTAACTGCCTGTGAAGTCTTGCTCTTCCATCATGAAGAAATGGGCATTCCATGGGAAATTGCAAAGCTTGGAGTAAGGAAAGGGATGTGGGGAACTGTTCAGAAGATTGAACCTGGTTTGCGAGCGTATCAAGAAGCAAGAGCTTCTGGTGCTGCACTCTCTCATTCAGCCTTTATGGCCCAAGTCAACACAAAAATAAGTCCTGAGTACTTGCAATCCATTGGTGGTGATGATAACTCAGCAGAGAATGAAAGTTTGGTTGCTTCTGAGAAACCACAGGGCATGAACATACCAAAGATGCTAGTCATTGGTGGTGCTGTTGCTCTTGCTTGTAGTCTTGATAGGGGACTGGTGACAAAGTATCTTCTATTTGGTGTTGCTAGAAGATTTGCTAATATAGGTAAAAGATAG

Predicted protein sequences of Glyma04g40680

Limit To All Plant Sequences

>Glyma04g40680.1   sequence type=predicted peptide   gene model=Glyma04g40680   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVLSQSFYDMLENPAILGLCTVIGMLFSPLWVTFFFGVIVGWLWKPKWARLGEKKLATTLAKSLDFASPSSASSPSKFPVSPMKSCSSSPCLNSIKMLPPNPESLLLKKGVDKKASSSSSPVKFASSVSSPKSCEETSEAVTMADLHHLWQLVEEKDGGLPWIQMMDRSTPTMSYKAWRREPKDGPPQYRSSTIFEDATPEMVRDLFWDDEFRPRWDDMLASSSIIEECPTTGTMKVQWIRKFPFFCKDREYIIGRRIWESGRHYYCVTKGVDCPLIPKKDKPRRVDVYYSSWCIRAVESNRGNGQLTACEVLLFHHEEMGIPWEIAKLGVRKGMWGTVQKIEPGLRAYQEARASGAALSHSAFMAQVNTKISPEYLQSIGGDDNSAENESLVASEKPQGMNIPKMLVIGGAVALACSLDRGLVTKYLLFGVARRFANIGKR*

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