Glyma04g40650 - SoyBase

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Report for Sequence Feature Glyma04g40650

Feature Type:	gene_model
Chromosome:	Gm04
Start:	46639630
stop:	46641783
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g40650

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G24490	AT	Annotation by Michelle Graham. TAIR10: 30S ribosomal protein, putative \| chr5:8365690-8367178 FORWARD LENGTH=308	SoyBase	E_val: 2.00E-123	ISS
GO:0006412	GO-bp	Annotation by Michelle Graham. GO Biological Process: translation	SoyBase	N/A	ISS
GO:0044238	GO-bp	Annotation by Michelle Graham. GO Biological Process: primary metabolic process	SoyBase	N/A	ISS
GO:0005840	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: ribosome	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0009534	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid	SoyBase	N/A	ISS
GO:0009570	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma	SoyBase	N/A	ISS
GO:0003735	GO-mf	Annotation by Michelle Graham. GO Molecular Function: structural constituent of ribosome	SoyBase	N/A	ISS
PF02482	PFAM	Sigma 54 modulation protein / S30EA ribosomal protein	JGI		ISS
UniRef100_B9SEK8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Plastid-specific 30S ribosomal protein 1, chloroplast, putative n=1 Tax=Ricinus communis RepID=B9SEK8_RICCO	SoyBase	E_val: 2.00E-130	ISS
UniRef100_I1JYI1	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JYI1_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma04g40650

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g40650

Paralog	Evidence	Comments
Glyma06g14140	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g40650 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g228400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g40650

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma04g40650

Limit To All Plant Sequences

>Glyma04g40650.1   sequence type=CDS   gene model=Glyma04g40650   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCACTCTCTTTAACTTCAACTCCACCCTTCGCCCCTCTTGTTATCATCCCTCCTCACCCTCCTCATCTTATCCCCACTTCTTCAAGACACTCTCCACAACTTTCTTGGGCCACACCGTAACCCTCAAATATGCTGCCACTTCCGCAAGCATCCCTCCCCGTTCACTCTCCGCTCACATGTCATGGGACGGTCCTCTCTCTTCCGTCAAATTGATCATTCAGGGTAAAAATCTCGAGCTCACTGATGCAGTGAAGCAGCATGTGGAAGACAAAGTGGGGAAAGCGGTTCAGAAGCACAGTCACCTAGTGAGAGAGGTTGATGTGAGGCTTTCTATTCGAGGAGGAGGTGAATTTGGGCGAGGACCCAGAACTCGTAGATGTGAGGTGACTTTGTTCACGAAAAGGCATGGTGTGGTGCGGGCTGAGGAGGATGCTGAAAGCACCTATGGAAGTATAGATTTGGTGTCATCGATCATTCAGAGGAAGTTGAGGAAAATAAAGGAGAAGGTGTCAGATCATGGTCGCCACATGAAGGGGTTCAATAGGCTGAAGGTTAGGGAGCCCGTGGAGCAATTACCTGTCGAAGAGGATGAAATATTATCCCCACAGGAGGAGGAAGAATCAATTGACGAGGTTGTTCGCACAAAGTACTTTGACATGCCACCATTGACTGTGGCTGAAGCAATTGAGCAGCTTGAAAATGTTGATCATGACTTCTATGGTTTTCGAAATGAAGAAACTGGGGAAATTAATATTGTGTACAAAAGAAAAGAAGGAGGATATGGACTCATTGTACCAAAGGGAGATGGCGAAGCAGAGAAATTGGAGCCTGTAGTGCTTGAACCAGCTATAGAATCCTCCCTGAAAGAATGA

Predicted protein sequences of Glyma04g40650

Limit To All Plant Sequences

>Glyma04g40650.1   sequence type=predicted peptide   gene model=Glyma04g40650   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MATLFNFNSTLRPSCYHPSSPSSSYPHFFKTLSTTFLGHTVTLKYAATSASIPPRSLSAHMSWDGPLSSVKLIIQGKNLELTDAVKQHVEDKVGKAVQKHSHLVREVDVRLSIRGGGEFGRGPRTRRCEVTLFTKRHGVVRAEEDAESTYGSIDLVSSIIQRKLRKIKEKVSDHGRHMKGFNRLKVREPVEQLPVEEDEILSPQEEEESIDEVVRTKYFDMPPLTVAEAIEQLENVDHDFYGFRNEETGEINIVYKRKEGGYGLIVPKGDGEAEKLEPVVLEPAIESSLKE*

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