SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma04g40630

Feature Type:gene_model
Chromosome:Gm04
Start:46625356
stop:46626504
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma04g40630
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G53730AT Annotation by Michelle Graham. TAIR10: Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family | chr5:21808072-21808713 REVERSE LENGTH=213 SoyBaseE_val: 9.00E-87ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
PF03168PFAM Late embryogenesis abundant protein JGI ISS
UniRef100_B2KL74UniRef Annotation by Michelle Graham. Most informative UniRef hit: NDR1/HIN1-like protein n=1 Tax=Vitis vinifera RepID=B2KL74_VITVI SoyBaseE_val: 5.00E-110ISS
UniRef100_I1JYH8UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JYH8_SOYBN SoyBaseE_val: 7.00E-151ISS

Expression Patterns of Glyma04g40630
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g40630
ParalogEvidenceComments
Glyma06g14160 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g40630 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.04g228200 Wm82.a2.v1IGC As supplied by JGI

References for Glyma04g40630
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma04g40630
>Glyma04g40630.1   sequence type=CDS   gene model=Glyma04g40630   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCTAAAATCACAATAACCTCTCCAAAACACTGTGCTGGCAAAGAAGGACTTAGAATCAAGAAGAACTACAAGAAGATCTACTTCACTTTCTCAGCATTTTTCACCACAATCCTACTACTAATACTTCTTATATGGCTCATCCTCCACCCTGCAAAGCCTCAATTCTCCCTCAAAGAAGTTGACATCTACCAACTAAACCTCTCAGGCCCAAACCTCAACTCCTCCATCCAACTCACCCTCCTCTCCAAAAACCCAAACCAGAAAGTTGGCATTTACTACGACGAGATTCAATTCTATGCAACCTACAAGGGCCAACAAATTACCGGTGATACCCCTGTGCCACCCTTCTATCAAGGCCAAGAAGAGAGTAATCTCATAACAGCATCTTTGGTCGGAAATGCTTTACCCGTGGCTCCATCTCTTGGTTATGAACTTGGTCGTGATCAAATTGTTGGAAGACTAGTTTTGAATCTCAAAGCCAATGGAAAGCTTCGTTGGAAAGTGGGAACGTGGGTCTCTGGACGTTACAGATTCAATGTTAATTGTGTTGCCATCAATGCCTTTGGACCCTCTATTCCTGCAGGTCCTCTCACTTCAAAGCAAGGGGCTCAGTGTTCTACCACACTTTAA
Predicted protein sequences of Glyma04g40630
>Glyma04g40630.1   sequence type=predicted peptide   gene model=Glyma04g40630   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSKITITSPKHCAGKEGLRIKKNYKKIYFTFSAFFTTILLLILLIWLILHPAKPQFSLKEVDIYQLNLSGPNLNSSIQLTLLSKNPNQKVGIYYDEIQFYATYKGQQITGDTPVPPFYQGQEESNLITASLVGNALPVAPSLGYELGRDQIVGRLVLNLKANGKLRWKVGTWVSGRYRFNVNCVAINAFGPSIPAGPLTSKQGAQCSTTL*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo