Glyma04g40610 - SoyBase

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Report for Sequence Feature Glyma04g40610

Feature Type:	gene_model
Chromosome:	Gm04
Start:	46613210
stop:	46615579
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g40610

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G24520	AT	Annotation by Michelle Graham. TAIR10: Transducin/WD40 repeat-like superfamily protein \| chr5:8371708-8372733 REVERSE LENGTH=341	SoyBase	E_val: 0	ISS
GO:0006612	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein targeting to membrane	SoyBase	N/A	ISS
GO:0009723	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to ethylene stimulus	SoyBase	N/A	ISS
GO:0009733	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to auxin stimulus	SoyBase	N/A	ISS
GO:0009957	GO-bp	Annotation by Michelle Graham. GO Biological Process: epidermal cell fate specification	SoyBase	N/A	ISS
GO:0009963	GO-bp	Annotation by Michelle Graham. GO Biological Process: positive regulation of flavonoid biosynthetic process	SoyBase	N/A	ISS
GO:0010026	GO-bp	Annotation by Michelle Graham. GO Biological Process: trichome differentiation	SoyBase	N/A	ISS
GO:0010363	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of plant-type hypersensitive response	SoyBase	N/A	ISS
GO:0032880	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of protein localization	SoyBase	N/A	ISS
GO:0045165	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell fate commitment	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0000166	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleotide binding	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
KOG0290	KOG	Conserved WD40 repeat-containing protein AN11	JGI		ISS
PTHR19919	Panther	WD REPEAT CONTAINING PROTEIN	JGI		ISS
PF00400	PFAM	WD domain, G-beta repeat	JGI		ISS
UniRef100_E5KXR1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: A2 protein n=3 Tax=Pisum sativum RepID=E5KXR1_PEA	SoyBase	E_val: 0	ISS
UniRef100_I1JYH6	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JYH6_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma04g40610

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g40610

Paralog	Evidence	Comments
Glyma06g14180	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g40610 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g228000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g40610

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma04g40610

Limit To All Plant Sequences

>Glyma04g40610.1   sequence type=CDS   gene model=Glyma04g40610   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGAATTCGACCCAAGAATCCCACCTCCGATCCGAAAACTCCGTGAGCTACGAATCCCCCTACCCAATCTACGGCATGTCGTTCTCCCCTTCCCACCCCCACCGCCTGGCCCTCGGCAGCTTCATTGAAGAATACACCAACCGCGTTGACATCCTCTCCTTCCACCCCGACACCCTCTCCCTCACCCCCAACCCTTCTCTCTCCTTTGACCACCCTTACCCTCCCACCAAACTCATGTTCCACCCCCGCAAACCCCCCTCCTCCTCCTCCGACCTCCTCGCCACCTCCGGCGACTACCTCCGCCTCTGGGAGGTCCGCGACAACTCCGTGGAGGCCGTCTCCCTTTTCAACAACAGCAAGACCAGCGAGTTCTGCGCCCCCTTAACCTCCTTCGACTGGAACGATATCGACCCCAACCGCATCGCCACCTCCAGCATCGACACCACCTGCACCATCTGGGACATCGAACGCACCCTCGTCGAAACCCAACTCATCGCGCACGACAAAGAGGTCTACGACATCGCATGGGGAGAGGCCAGAGTCTTCGCCTCCGTCTCCGCCGACGGCTCCGTTAGAATCTTCGACCTACGCGACAAGGAGCACTCCACCATCATCTACGAGAGCCCCCACCCTGACACCCCTCTGCTCCGTTTGGCTTGGAACAAACAGGACCTGAGGTACATGGCTACTATTTTAATGGACAGTAATAAAGTTGTGATTTTGGATATTAGGTCTCCCACTACCCCTGTTGCGGAGTTAGAGAGGCACCGTGGGAGTGTGAACGCTATTGCTTGGGCTCCTCATAGTTCCACGCATATTTGTTCTGCTGGGGATGATACTCAGGCTCTTATTTGGGATTTGCCCACTCTGGCTTCTCCCACTGGGATTGATCCCGTGTGTATGTATTCTGCTGGCTGTGAAATTAACCAGCTGCAGTGGTCTGCCGTGCAGCCCGAATGGATTGCCATTGCTTTTGCCAACAAGATGCAGCTTTTGAAGGTTTGA

Predicted protein sequences of Glyma04g40610

Limit To All Plant Sequences

>Glyma04g40610.1   sequence type=predicted peptide   gene model=Glyma04g40610   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MENSTQESHLRSENSVSYESPYPIYGMSFSPSHPHRLALGSFIEEYTNRVDILSFHPDTLSLTPNPSLSFDHPYPPTKLMFHPRKPPSSSSDLLATSGDYLRLWEVRDNSVEAVSLFNNSKTSEFCAPLTSFDWNDIDPNRIATSSIDTTCTIWDIERTLVETQLIAHDKEVYDIAWGEARVFASVSADGSVRIFDLRDKEHSTIIYESPHPDTPLLRLAWNKQDLRYMATILMDSNKVVILDIRSPTTPVAELERHRGSVNAIAWAPHSSTHICSAGDDTQALIWDLPTLASPTGIDPVCMYSAGCEINQLQWSAVQPEWIAIAFANKMQLLKV*

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