Glyma04g40520 - SoyBase

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Report for Sequence Feature Glyma04g40520

Feature Type:	gene_model
Chromosome:	Gm04
Start:	46551392
stop:	46556779
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g40520

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G49490	AT	Annotation by Michelle Graham. TAIR10: unknown protein; Has 722 Blast hits to 186 proteins in 64 species: Archae - 0; Bacteria - 30; Metazoa - 72; Fungi - 48; Plants - 38; Viruses - 0; Other Eukaryotes - 534 (source: NCBI BLink). \| chr3:18344926-18348648 REVERSE LENGTH=953	SoyBase	E_val: 5.00E-19	ISS
GO:0006487	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein N-linked glycosylation	SoyBase	N/A	ISS
GO:0006635	GO-bp	Annotation by Michelle Graham. GO Biological Process: fatty acid beta-oxidation	SoyBase	N/A	ISS
GO:0010413	GO-bp	Annotation by Michelle Graham. GO Biological Process: glucuronoxylan metabolic process	SoyBase	N/A	ISS
GO:0016558	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein import into peroxisome matrix	SoyBase	N/A	ISS
GO:0045492	GO-bp	Annotation by Michelle Graham. GO Biological Process: xylan biosynthetic process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
UniRef100_I1KB28	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1KB28_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma04g40520

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g40520

Paralog	Evidence	Comments
Glyma06g14280	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g40520 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g227100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g40520

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma04g40520

Limit To All Plant Sequences

>Glyma04g40520.2   sequence type=CDS   gene model=Glyma04g40520   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAGGGTGTGGGAGGATATCACGATTGGCCCTATTACTCTTCGCCGGCTTCAAATTTATCAGCTTTTGCGGCGCCGTTTAGTGTGAATCCCTACACTTCCAGTGAGGCTTCGTCTCAGTTCATGGATTCAGCCGAATCCGCAGAAACTGTGCCCCCAATTCACTTTCAGCCCTACGGGTACGATTTCTTTTCGAGCCCCGTTAGACAATTGGATTCCAGTGCGCAATTCCCTCATCTGGGTTTGCCTTCTTATCCCGCAAGGTCAAGCCTTGTTGAAGCCCAACCCTACTATGCGTCTTCTGCAATTCACGATCACTCTTCTAATTCGGCGGCGCCTTATCATTGGTCTTCTGAGGCTCCCTCTTCGGGTTGGCCTTCGCTTAGGGTAGCTAATAAGTCACCTGAATTAGGGTTTTCTGGTCAAGGTGGTGTTTCCTGGGACCAGTTTCCGGAGTTCAATAGCCGCAGTAAAGAGAAACTGATCGAAGTTGGGAGAAGTCTCTCCTCAAAGGAAACAAATGTGGCTGGTTCGGTTGGTGAACAAAAGAGGAACCAAGGGAATCAAGATGTGAAGGACTCTGCTAATTGTGAGGTTCCACAAATTATTGATTGGGAAAACTACAATATGCCTGCAAGTGCAAATCATATACATGATACATCTAACTGGTGGGGAACTATCAAACCCATGCCAGTTGAATTTTCTGGTACATCTGTTATGCGATCCCCTTCAATGTCTCTAGAAACTCATCAAGAGGCCCCTTTGAAAGTAGTTTCTGATTCAGGGAACAATCACTCGTTGAACATTGGTTCATATGACAAACACTCAAGGCATGGTGATAAACCTTCAAGAGTTGATACTGTTTCTTCAATGCCTAGAACAGGGTTGGTTACAGATTTGAATATTGAGGATATTATAGCAGATGAACATGTTGGGCACAATGATTTCTATAATACAAAGGAGGCTTCTCACATGCCTAGTCCTGGAACTGCTGGGTTCTTTGATTCAGGTCCTATCCATATGCATCTAGGAAGAAATGAGCCTTCCTCATCAAACAAAGCAATGATTTCAGACAAGAATGTTTCGATGAATGTTGTTGATTATATATTTAGAGGAAGTCATGCAAATGTGGATAATTTAAGATTGAGACCTAATGCTACTGAGGGTGCCAATTTTGTTCAGAAATCTTTTGAGGGTGTTGACCAATGCAATCCGGCTGAAGACTCACCTTGCTGGAAGGGAGCTTCTGCTGCTCGCTTTTCTCATTTTGAACCTTCTGCAGCTCTGCCTCAAGAATATGTACACAAAAAGGAAATCAGCTTTGGTTCTATCATTCAGGAGCCTCAGAATATTCTGCTTGATACAGAAAACAATATGAAAAAATCAGGTGAAAATTCAAATGGCTATCAAACGCATACCAAAATTGTCAATCAGGAAAGAAGTTCAGCAGGTTCTCCAAGGAAATTTTCGGTAACAAAGTTTGCACCTGAATATTTCAAGTCAGGTAGTGCTGTGAATGATGGTCCTTTTCAATCTAAGCCTAGCTGTGGTTTTGGACTTCATTATCTGGATATTACCAAAATGAAGGAAAATACTGTGCCACCAGCCAAGCCAACTGACTGTGCATCTGGATCTTCTCAGATGGGGCTTCAACATGTAGACTTAAAGGAATTTATTATTTTTCAGAAACAGCAAGCTTTAGTATGTACAGGTGATGTAGATTCTGGATGCAATGTGAATAATTGCTCGGAATATAGTTCATCTTGCTCTGCTGAACATGTCCCGCCTTCACCTTCTTCAGTAGTAGATACAACTACTACACCTGAAAATTCAGCTAGGAAAGTATCAACTGAAAAATTAAATGTCCAAATGCTGCTTGATACATTGCAAAATTTATCAGAATTGCTTCTTTATCATTGCTTAAATGATGCCTGTGAATTGAAAGAGCGAGATTGTAATATCCTTAAAAACGTGATCAGTAATCTTAATACATGTGCTTTAAAGAATGCTGAACAAATTGCCCCTGCACAAGAATGTTTTTTCAATCAGCCAGAAACTTCTAAGAGTGCTGGAGAATCACGTGAGTTTCACCAGAATGCAAGTTTCAAGAGGCCACAATTAACCAAGACAGAAATGACAAAGGCTTGTAACATGACTAAGGATCTAAAGAGGATTCTTAGTGAGAATTTCCATGATGATGATGAAGGAGCAGAGCCTCAGACTGTATTATATAAGAACCTGTGGCTTGAGGCTGAAGCTGCACTTTGTTCCGTCTATTACAAGGCTCGCTATAATCAAATAAAGATTGAAATGGATAAACATTCATACCAGGAAAAAGAGATGGAGAAGCAATCTAAATCTGAGGTTGTTCCGTCTTTGAGCCAGAGTCAGAGTTTTGCAACTAAAGTGCATCATCCAAACCCTGATTCTTCTGCTGCCCTTAAATTTCGTGTCTTGGATGCAACCAATCTGGAGGAACTATCTTGCTTGAATATTTCCACTGATATGAACAAGCCTAATGCAATGACACCTGAAGGAAAAGGTGGTCAAAACCTGGATAGCTTCATCAATAATTATTTTGTTCCCTGCTCAGACGATGAGGCTGAAAGAAATGATGAGTCTTCTGTTATGGCCAGATACCAAGTTCTCAAAGCCCGGGTTGACCAGTCATCCATTGATAATCTGGAGGAACCATTAGACATAGCAGACAAGTCATCACCTAGAGGGAGGGATAATCAAAACCAAGTTAATTTATCCCAAGATTCTCCTATTCCTGAAAAAAACTGTACTGATTATGAGACATCTGTTCTGGCTAGGTTTCATATTCTTAAATCCCGGATTGAAGGTTCAAGTTCTACTTCAGAAGGGAAGCAATTAGATGGAGATGGATCTGCTGGCAAAGAAATGGATGACACAACAAATTCAACATATGTATCTGAGGGTAAAAGTTTGGACGTCCATGTAAATCCTGCTGTGGTGCATCTCAATTCCTACACTGCCGTGGACAAGTCAATCCCAAAAGAGTTTCATCTGGATTCGGAGGACAATCAAGAAACTCAGCCTAGTGGAACCTGTGAGTTTCAGCCTCCTACTTACTACTCCGATGGCTTTGCATCAGATTGGGAACATGTGGAGAAAAGCTTGTAG

Predicted protein sequences of Glyma04g40520

Limit To All Plant Sequences

>Glyma04g40520.2   sequence type=predicted peptide   gene model=Glyma04g40520   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKGVGGYHDWPYYSSPASNLSAFAAPFSVNPYTSSEASSQFMDSAESAETVPPIHFQPYGYDFFSSPVRQLDSSAQFPHLGLPSYPARSSLVEAQPYYASSAIHDHSSNSAAPYHWSSEAPSSGWPSLRVANKSPELGFSGQGGVSWDQFPEFNSRSKEKLIEVGRSLSSKETNVAGSVGEQKRNQGNQDVKDSANCEVPQIIDWENYNMPASANHIHDTSNWWGTIKPMPVEFSGTSVMRSPSMSLETHQEAPLKVVSDSGNNHSLNIGSYDKHSRHGDKPSRVDTVSSMPRTGLVTDLNIEDIIADEHVGHNDFYNTKEASHMPSPGTAGFFDSGPIHMHLGRNEPSSSNKAMISDKNVSMNVVDYIFRGSHANVDNLRLRPNATEGANFVQKSFEGVDQCNPAEDSPCWKGASAARFSHFEPSAALPQEYVHKKEISFGSIIQEPQNILLDTENNMKKSGENSNGYQTHTKIVNQERSSAGSPRKFSVTKFAPEYFKSGSAVNDGPFQSKPSCGFGLHYLDITKMKENTVPPAKPTDCASGSSQMGLQHVDLKEFIIFQKQQALVCTGDVDSGCNVNNCSEYSSSCSAEHVPPSPSSVVDTTTTPENSARKVSTEKLNVQMLLDTLQNLSELLLYHCLNDACELKERDCNILKNVISNLNTCALKNAEQIAPAQECFFNQPETSKSAGESREFHQNASFKRPQLTKTEMTKACNMTKDLKRILSENFHDDDEGAEPQTVLYKNLWLEAEAALCSVYYKARYNQIKIEMDKHSYQEKEMEKQSKSEVVPSLSQSQSFATKVHHPNPDSSAALKFRVLDATNLEELSCLNISTDMNKPNAMTPEGKGGQNLDSFINNYFVPCSDDEAERNDESSVMARYQVLKARVDQSSIDNLEEPLDIADKSSPRGRDNQNQVNLSQDSPIPEKNCTDYETSVLARFHILKSRIEGSSSTSEGKQLDGDGSAGKEMDDTTNSTYVSEGKSLDVHVNPAVVHLNSYTAVDKSIPKEFHLDSEDNQETQPSGTCEFQPPTYYSDGFASDWEHVEKSL*

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