SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G54130 | AT | Annotation by Michelle Graham. TAIR10: Calcium-binding endonuclease/exonuclease/phosphatase family | chr5:21962900-21965279 FORWARD LENGTH=436 | SoyBase | E_val: 0 | ISS |
| GO:0005509 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: calcium ion binding | SoyBase | N/A | ISS |
| KOG2338 | KOG | Transcriptional effector CCR4-related protein | JGI | ISS | |
| PTHR12121 | Panther | CARBON CATABOLITE REPRESSOR PROTEIN 4 | JGI | ISS | |
| PF03372 | PFAM | Endonuclease/Exonuclease/phosphatase family | JGI | ISS | |
| UniRef100_G7J9M4 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Calcium-binding protein, putative n=1 Tax=Medicago truncatula RepID=G7J9M4_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1JYG2 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1JYG2_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma04g40460 not represented in the dataset |
Glyma04g40460 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.04g226800 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma04g40460.2 sequence type=transcript gene model=Glyma04g40460 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATTGAATAAGACCGAAAGGAAGGAGAGGTGGGTCAAATCGGTTCGGCCGTTGGGGCAGTTAAAGTATGGTGGAAAAATTATAAAAGAGTGGCTAAAACCTATTTCTGAGACAACGTTTGCTATTATCGGCTCTCTGTTTTTTTTTTCTTTTCATTTCTGCATTTGACCCCTCACACCACACCAAGTTCTGAAAGCCCTTTTCCTCCCTTCTTTTCAAACCTCAATCATCATCGTATCCTTTCATAATTCAGATACCAAACCAAACAAAACAACAACCATTTCCAATTGCGGTTACTTTCCCATCAAATAATAAATATTTCATCATCTTTGATTGCATACAATAATTACTATATTAGGGGGCAGCATTGGTGGGCTGGGTTTGGACGTAGAATGATAACGGATAGGTGGGCTAAGAGCATGGGAAGGATTTCAAGGATTGGGAGTTTTGCGATTTCTTCTTCCATTAAGGAAAACCAACAACAACCTTGTATTACCTGCACCACTTTTAACATTCTCGCCCCCATATACAAACGCATCAACCATGAGGATCCGAGTTGCCGCGAGAGCGACTACAGAGCGTATTGGTTGGCAAGGAATCACAGGATATTGGATTGGTTGTTGAATGATAGGTCTTCCATTATCTGTCTTCAGGAATTTTGGGTTGGAAATGAAGAGCTTGTTAATTTGTACGAAAAGAGCCTTGGAGACGCTGGTTATGTCAGTTTCAAGCTTGGAAGGACGAACAACCGTGGGGACGGTCTTCTAATAGCAGTGCAAAGGGAGTACTTTAATATTCTTAATTATAAGGAGTTGCATTTCAATGATTTTGGTGATCGTGTGGCTCAGTTGTTACATGTTGAACTAGCTTCTCCGATTTCGCAATGGCGAAACAGTAATATTAGGCAGGAAATTTTGATTGTTAACACTCACCTGATATTTCCCCATGATTCAACTCTATCCCTTGTACGACTGCAGCAGGTTTACAAGATACTTCAATACGTAGAATCTTATCAGAATGATTTCCAACTCAAGCCAATGCCAATCGTACTTTGCGGTGACTGGAATGGAAGCAAACGTGGACACGTCTACAAGTTCTTGAGGTCTCAGGGCTTTGTATCATCTTATGATACTGCACATCATTACACTGATGCAGATGCTCACAAGTGGGTTAGCCACCGCAATCACCGGGGAAATATATGTGCTGTTGATTTTATTTGGCTTCTCAATCCCGACAAATATCGAAAACTACTAAAAGCTAGTTGGAGTGAAGCAGTTTTTGGTATGTTCAAGTATCTACTACGGAGAGCTATATTGACTGAGAGTGATGCATTTGCCTTTCTAAAGGTTGATAACGAAGATTGTATTACCTATTCTGGTTTCTGTGAAGCACTTAAACAGCTCAGTTTAACTGGTCATTGCCATGGATTGAGCGACGAAGAGATAAAGGACTTGTGGGTCCAAGCAGATGTAGATGGAAACGGTGTTCTTGATTATAAAAAATTTCTGCAAATCTGGAGTTCAACAGCTCCAGATATAGATGACAACAAGAATGGTGATCAGGACGACGGTTCAAATGATGCACAGGAGCAAACAATTGGTTTCAGTGTAAAAAACGCAGTTTTGTTCCCTCCAGAAGTAGAGAAAGGTAGATGGCCTGAAGACTACTCCCTTTCTGATCATGCACGGCTCACTGTAGTGTTTTCGCCCATAAGAATGCCATGCTCCCAGTTGATTTGCTGACAATGTTTTTGGCCTCTCTAGCATAGGTTTTAGAATTACGACTTATGTACATATATATGTCACTATAAGAATGGGTGAAACAGTGGAACGAGCAAGGGAAGATACAAGAGTTCTTTTCTGGGGTGATTTTAAAGAGCCCTGTGTTGTGATTACTGCACCATCACTTGACAAGGTAAGCATAAGCATACTAAAGAGTGTAATTTGAAGGCAGTAGCACTCTAGTATCTCTGGCTGGGCGGCATTGCTGATGATGACATTTGCAGTGAGCAACACTCCTCACCCAGTTTGTTTTTCCCATTTATTGTTCTTGTATGGTGAAACATGAAAGATTAGACCAAAGGAAGCAACAGAAGAAATGATCTGTATAGTTGTGTATAGGTCCTAGGCGTCAAACCATTTTGTAGCTAGGTAAGATGGCACCCCCAGCTAGAGCTTTCTTTAAATAGGGGAGAATTCAGACAACATTGTCTTGTAACATATTTTTCTCTTGATACAGTTGTGATAAATTCATTGTACAAAGTTCGATAAACTAGTTTCTTTTTAAGAACTCAGGTGCTCTCCTCCCTCCCCCTCCTTCCCCTCG
>Glyma04g40460.1 sequence type=CDS gene model=Glyma04g40460 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGATAACGGATAGGTGGGCTAAGAGCATGGGAAGGATTTCAAGGATTGGGAGTTTTGCGATTTCTTCTTCCATTAAGGAAAACCAACAACAACCTTGTATTACCTGCACCACTTTTAACATTCTCGCCCCCATATACAAACGCATCAACCATGAGGATCCGAGTTGCCGCGAGAGCGACTACAGAGCGTATTGGTTGGCAAGGAATCACAGGATATTGGATTGGTTGTTGAATGATAGGTCTTCCATTATCTGTCTTCAGGAATTTTGGGTTGGAAATGAAGAGCTTGTTAATTTGTACGAAAAGAGCCTTGGAGACGCTGGTTATGTCAGTTTCAAGCTTGGAAGGACGAACAACCGTGGGGACGGTCTTCTAATAGCAGTGCAAAGGGAGTACTTTAATATTCTTAATTATAAGGAGTTGCATTTCAATGATTTTGGTGATCGTGTGGCTCAGTTGTTACATGTTGAACTAGCTTCTCCGATTTCGCAATGGCGAAACAGTAATATTAGGCAGGAAATTTTGATTGTTAACACTCACCTGATATTTCCCCATGATTCAACTCTATCCCTTGTACGACTGCAGCAGGTTTACAAGATACTTCAATACGTAGAATCTTATCAGAATGATTTCCAACTCAAGCCAATGCCAATCGTACTTTGCGGTGACTGGAATGGAAGCAAACGTGGACACGTCTACAAGTTCTTGAGGTCTCAGGGCTTTGTATCATCTTATGATACTGCACATCATTACACTGATGCAGATGCTCACAAGTGGGTTAGCCACCGCAATCACCGGGGAAATATATGTGCTGTTGATTTTATTTGGCTTCTCAATCCCGACAAATATCGAAAACTACTAAAAGCTAGTTGGAGTGAAGCAGTTTTTGGTATGTTCAAGTATCTACTACGGAGAGCTATATTGACTGAGAGTGATGCATTTGCCTTTCTAAAGGTTGATAACGAAGATTGTATTACCTATTCTGGTTTCTGTGAAGCACTTAAACAGCTCAGTTTAACTGGTCATTGCCATGGATTGAGCGACGAAGAGATAAAGGACTTGTGGGTCCAAGCAGATGTAGATGGAAACGGTGTTCTTGATTATAAAAAATTTCTGCAGCAAATCTGGAGTTCAACAGCTCCAGATATAGATGACAACAAGAATGGTGATCAGGACGACGGTTCAAATGATGCACAGGAGCAAACAATTGGTTTCAGTGTAAAAAACGCAGTTTTGTTCCCTCCAGAAGTAGAGAAAGGTAGATGGCCTGAAGACTACTCCCTTTCTGATCATGCACGGCTCACTGTAGTGTTTTCGCCCATAAGAATGCCATGCTCCCAGTTGATTTGCTGA >Glyma04g40460.2 sequence type=CDS gene model=Glyma04g40460 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGATAACGGATAGGTGGGCTAAGAGCATGGGAAGGATTTCAAGGATTGGGAGTTTTGCGATTTCTTCTTCCATTAAGGAAAACCAACAACAACCTTGTATTACCTGCACCACTTTTAACATTCTCGCCCCCATATACAAACGCATCAACCATGAGGATCCGAGTTGCCGCGAGAGCGACTACAGAGCGTATTGGTTGGCAAGGAATCACAGGATATTGGATTGGTTGTTGAATGATAGGTCTTCCATTATCTGTCTTCAGGAATTTTGGGTTGGAAATGAAGAGCTTGTTAATTTGTACGAAAAGAGCCTTGGAGACGCTGGTTATGTCAGTTTCAAGCTTGGAAGGACGAACAACCGTGGGGACGGTCTTCTAATAGCAGTGCAAAGGGAGTACTTTAATATTCTTAATTATAAGGAGTTGCATTTCAATGATTTTGGTGATCGTGTGGCTCAGTTGTTACATGTTGAACTAGCTTCTCCGATTTCGCAATGGCGAAACAGTAATATTAGGCAGGAAATTTTGATTGTTAACACTCACCTGATATTTCCCCATGATTCAACTCTATCCCTTGTACGACTGCAGCAGGTTTACAAGATACTTCAATACGTAGAATCTTATCAGAATGATTTCCAACTCAAGCCAATGCCAATCGTACTTTGCGGTGACTGGAATGGAAGCAAACGTGGACACGTCTACAAGTTCTTGAGGTCTCAGGGCTTTGTATCATCTTATGATACTGCACATCATTACACTGATGCAGATGCTCACAAGTGGGTTAGCCACCGCAATCACCGGGGAAATATATGTGCTGTTGATTTTATTTGGCTTCTCAATCCCGACAAATATCGAAAACTACTAAAAGCTAGTTGGAGTGAAGCAGTTTTTGGTATGTTCAAGTATCTACTACGGAGAGCTATATTGACTGAGAGTGATGCATTTGCCTTTCTAAAGGTTGATAACGAAGATTGTATTACCTATTCTGGTTTCTGTGAAGCACTTAAACAGCTCAGTTTAACTGGTCATTGCCATGGATTGAGCGACGAAGAGATAAAGGACTTGTGGGTCCAAGCAGATGTAGATGGAAACGGTGTTCTTGATTATAAAAAATTTCTGCAAATCTGGAGTTCAACAGCTCCAGATATAGATGACAACAAGAATGGTGATCAGGACGACGGTTCAAATGATGCACAGGAGCAAACAATTGGTTTCAGTGTAAAAAACGCAGTTTTGTTCCCTCCAGAAGTAGAGAAAGGTAGATGGCCTGAAGACTACTCCCTTTCTGATCATGCACGGCTCACTGTAGTGTTTTCGCCCATAAGAATGCCATGCTCCCAGTTGATTTGCTGA
>Glyma04g40460.1 sequence type=predicted peptide gene model=Glyma04g40460 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MITDRWAKSMGRISRIGSFAISSSIKENQQQPCITCTTFNILAPIYKRINHEDPSCRESDYRAYWLARNHRILDWLLNDRSSIICLQEFWVGNEELVNLYEKSLGDAGYVSFKLGRTNNRGDGLLIAVQREYFNILNYKELHFNDFGDRVAQLLHVELASPISQWRNSNIRQEILIVNTHLIFPHDSTLSLVRLQQVYKILQYVESYQNDFQLKPMPIVLCGDWNGSKRGHVYKFLRSQGFVSSYDTAHHYTDADAHKWVSHRNHRGNICAVDFIWLLNPDKYRKLLKASWSEAVFGMFKYLLRRAILTESDAFAFLKVDNEDCITYSGFCEALKQLSLTGHCHGLSDEEIKDLWVQADVDGNGVLDYKKFLQQIWSSTAPDIDDNKNGDQDDGSNDAQEQTIGFSVKNAVLFPPEVEKGRWPEDYSLSDHARLTVVFSPIRMPCSQLIC* >Glyma04g40460.2 sequence type=predicted peptide gene model=Glyma04g40460 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MITDRWAKSMGRISRIGSFAISSSIKENQQQPCITCTTFNILAPIYKRINHEDPSCRESDYRAYWLARNHRILDWLLNDRSSIICLQEFWVGNEELVNLYEKSLGDAGYVSFKLGRTNNRGDGLLIAVQREYFNILNYKELHFNDFGDRVAQLLHVELASPISQWRNSNIRQEILIVNTHLIFPHDSTLSLVRLQQVYKILQYVESYQNDFQLKPMPIVLCGDWNGSKRGHVYKFLRSQGFVSSYDTAHHYTDADAHKWVSHRNHRGNICAVDFIWLLNPDKYRKLLKASWSEAVFGMFKYLLRRAILTESDAFAFLKVDNEDCITYSGFCEALKQLSLTGHCHGLSDEEIKDLWVQADVDGNGVLDYKKFLQIWSSTAPDIDDNKNGDQDDGSNDAQEQTIGFSVKNAVLFPPEVEKGRWPEDYSLSDHARLTVVFSPIRMPCSQLIC*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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