SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G24680 | AT | Annotation by Michelle Graham. TAIR10: Peptidase C78, ubiquitin fold modifier-specific peptidase 1/ 2 | chr5:8453666-8455358 FORWARD LENGTH=399 | SoyBase | E_val: 7.00E-83 | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| KOG4696 | KOG | Uncharacterized conserved protein | JGI | ISS | |
| PTHR13226 | Panther | FAMILY NOT NAMED | JGI | ISS | |
| PTHR13226:SF14 | Panther | SUBFAMILY NOT NAMED | JGI | ISS | |
| PF07910 | PFAM | Peptidase family C78 | JGI | ISS | |
| UniRef100_G7J9Q3 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Zinc finger with UFM1-specific peptidase domain protein n=1 Tax=Medicago truncatula RepID=G7J9Q3_MEDTR | SoyBase | E_val: 5.00E-150 | ISS |
| UniRef100_UPI000233A1E1 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233A1E1 related cluster n=1 Tax=unknown RepID=UPI000233A1E1 | SoyBase | E_val: 0 | ISS |
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Glyma04g40340 not represented in the dataset |
Glyma04g40340 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma06g14440 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.04g225400 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma04g40340.3 sequence type=transcript gene model=Glyma04g40340 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GCGCATTTGAATTCTTCTTCACCATTATGGTGGTAATAGCAATGGGAAGATGGATTCAGATTCATTCGTTAGTTGCCCCTTCTGCGATTCACAAGTACCCTTTTCTCAACGTACTGGGCACTTCAAGACGCACTTTTGGGATCTCGACGATGATTTTGACCTGCCCCCAACACCTCAATCTCAATCTCTTCCGAGAGAGCAAGCACCCAATGGCTCACGGTCCGGAGCAAACTATTCGTGTGGTGGTGAGACTAATAGTGATAATGGGGAATGCAAAGTGAATGACAAAATCTCTTGCTTGATTGGTTCGCAGACAAGGAGCAATTTTTACAAAGTTGAAGGTGGTCTGATGGCATTGTTGAGAAACTGTTTAGACTCTGAAGTTGGAAATTCTTATAGTATTTTGTCAGGTTATGTTGATCATTTCCAGTGCCTTGAATCTGAGGATGCCGGATGGGGTTGTGGCTGGTGTAACATTCAGATGCTTTGCTCTCACTTACTAGTGGAAAGACCAGAAGCAAGGAAAGCTTTGTTTGGTGGTTCTGGATTTGTTCCTGATATCCTGTCGCTCCAGAGATGGCTTGAGATTGCTTGGGAAAAGGGTTTTGATGCGCCTGGATCAGCTCAATTCAATTATGTTATTTGTGGTTCAAAAGAATGGATAGGAACTACTGAGTGCACTGCTCTTTTGCGTTCCTTTGCTCTTCGGGCAAGAGTAGTGGATTTTGGTCCTAAGGAATCCCAATCCCTCACAGGTTCAAGTGTTGATAACATGAGGGATAAAGCAAATATTCATAATATAGTAAAAAGAAAAGCTGAAAAGAGTGAGGGTTATCAAGTTCTCATGGATTTTGTGTGGAATTACTTTTCTGATAAAAGCTCAATCCTATTTTGCCAGCAGCATGTTGTGATCAGTGAGAAAACGCCAGTTATGGCATATTTTAGATACAAATTTTTAACCTCAAATAATTTTGTTTCTTAAATTGTTTTTTAATTTTGTAATTCTTTCTTGGACAGGCCTCTATACTTTCAACATAATGGTCACTCAAGAACAATAGTTGGAATTCAAGTCAACTGTCAACAAAAAGGACATCTTCAATATAATCTCCTAGTTTTGGACCCTGCTCATGTAATTTATCTGCATTCCTAGCTTCATATTTTGTTATTAATATCTATTTCCATAACTTTCATATAGATGATTTGGGGTAATTGCATATTATACAAATATTTGTAGCTCTATCATTGTCAAGAAACTAAAGAAAAAAAGAAGTATAGAATGTTGTAAAATTGGCATT
>Glyma04g40340.2 sequence type=CDS gene model=Glyma04g40340 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGATTCAGATTCATTCGTTAGTTGCCCCTTCTGCGATTCACAAGTACCCTTTTCTCAACGTACTGGGCACTTCAAGACGCACTTTTGGGATCTCGACGATGATTTTGACCTGCCCCCAACACCTCAATCTCAATCTCTTCCGAGAGAGCAAGCACCCAATGGCTCACGGTCCGGAGCAAACTATTCGTGTGGTGGTGAGACTAATAGTGATAATGGGGAATGCAAAGTGAATGACAAAATCTCTTGCTTGATTGGTTCGCAGACAAGGAGCAATTTTTACAAAGTTGAAGGTGGTCTGATGGCATTGTTGAGAAACTGTTTAGACTCTGAAGTTGGAAATTCTTATAGTATTTTGTCAGGTTATGTTGATCATTTCCAGTGCCTTGAATCTGAGGATGCCGGATGGGGTTGTGGCTGGTGTAACATTCAGATGCTTTGCTCTCACTTACTAGTGGAAAGACCAGAAGCAAGGAAAGCTTTGTTTGGTGGTTCTGGATTTGTTCCTGATATCCTGTCGCTCCAGAGATGGCTTGAGATTGCTTGGGAAAAGGGTTTTGATGCGCCTGGATCAGCTCAATTCAATTATGTTATTTGTGGTTCAAAAGAATGGATAGGAACTACTGAGTGCACTGCTCTTTTGCGTTCCTTTGCTCTTCGGGCAAGAGTAGTGGATTTTGGTCCTAAGGAATCCCAATCCCTCACAGGTTCAAGTGTTGATAACATGAGGGATAAAGCAAATATTCATAATATAGTAAAAAGAAAAGCTGAAAAGAGTGAGGGTTATCAAGTTCTCATGGATTTTGTGTGGAATTACTTTTCTGATAAAAGCTCAATCCTATTTTGCCAGCAGCATGTTGTGATCAGTGAGAAAACGCCTCTATACTTTCAACATAATGGTCACTCAAGAACAATAGTTGGAATTCAAGTCAACTGTCAACAAAAAGGACATCTTCAATATAATCTCCTAGTTTTGGACCCTGCTCATGTAATTTATCTGCATTCCTAG >Glyma04g40340.3 sequence type=CDS gene model=Glyma04g40340 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGATTCAGATTCATTCGTTAGTTGCCCCTTCTGCGATTCACAAGTACCCTTTTCTCAACGTACTGGGCACTTCAAGACGCACTTTTGGGATCTCGACGATGATTTTGACCTGCCCCCAACACCTCAATCTCAATCTCTTCCGAGAGAGCAAGCACCCAATGGCTCACGGTCCGGAGCAAACTATTCGTGTGGTGGTGAGACTAATAGTGATAATGGGGAATGCAAAGTGAATGACAAAATCTCTTGCTTGATTGGTTCGCAGACAAGGAGCAATTTTTACAAAGTTGAAGGTGGTCTGATGGCATTGTTGAGAAACTGTTTAGACTCTGAAGTTGGAAATTCTTATAGTATTTTGTCAGGTTATGTTGATCATTTCCAGTGCCTTGAATCTGAGGATGCCGGATGGGGTTGTGGCTGGTGTAACATTCAGATGCTTTGCTCTCACTTACTAGTGGAAAGACCAGAAGCAAGGAAAGCTTTGTTTGGTGGTTCTGGATTTGTTCCTGATATCCTGTCGCTCCAGAGATGGCTTGAGATTGCTTGGGAAAAGGGTTTTGATGCGCCTGGATCAGCTCAATTCAATTATGTTATTTGTGGTTCAAAAGAATGGATAGGAACTACTGAGTGCACTGCTCTTTTGCGTTCCTTTGCTCTTCGGGCAAGAGTAGTGGATTTTGGTCCTAAGGAATCCCAATCCCTCACAGGTTCAAGTGTTGATAACATGAGGGATAAAGCAAATATTCATAATATAGTAAAAAGAAAAGCTGAAAAGAGTGAGGGTTATCAAGTTCTCATGGATTTTGTGTGGAATTACTTTTCTGATAAAAGCTCAATCCTATTTTGCCAGCAGCATGTTGTGATCAGTGAGAAAACGCCAGTTATGGCATATTTTAGATACAAATTTTTAACCTCAAATAATTTTGTTTCTTAA
>Glyma04g40340.2 sequence type=predicted peptide gene model=Glyma04g40340 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MDSDSFVSCPFCDSQVPFSQRTGHFKTHFWDLDDDFDLPPTPQSQSLPREQAPNGSRSGANYSCGGETNSDNGECKVNDKISCLIGSQTRSNFYKVEGGLMALLRNCLDSEVGNSYSILSGYVDHFQCLESEDAGWGCGWCNIQMLCSHLLVERPEARKALFGGSGFVPDILSLQRWLEIAWEKGFDAPGSAQFNYVICGSKEWIGTTECTALLRSFALRARVVDFGPKESQSLTGSSVDNMRDKANIHNIVKRKAEKSEGYQVLMDFVWNYFSDKSSILFCQQHVVISEKTPLYFQHNGHSRTIVGIQVNCQQKGHLQYNLLVLDPAHVIYLHS* >Glyma04g40340.3 sequence type=predicted peptide gene model=Glyma04g40340 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MDSDSFVSCPFCDSQVPFSQRTGHFKTHFWDLDDDFDLPPTPQSQSLPREQAPNGSRSGANYSCGGETNSDNGECKVNDKISCLIGSQTRSNFYKVEGGLMALLRNCLDSEVGNSYSILSGYVDHFQCLESEDAGWGCGWCNIQMLCSHLLVERPEARKALFGGSGFVPDILSLQRWLEIAWEKGFDAPGSAQFNYVICGSKEWIGTTECTALLRSFALRARVVDFGPKESQSLTGSSVDNMRDKANIHNIVKRKAEKSEGYQVLMDFVWNYFSDKSSILFCQQHVVISEKTPVMAYFRYKFLTSNNFVS*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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