Glyma04g40290 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma04g40290

Feature Type:	gene_model
Chromosome:	Gm04
Start:	46390227
stop:	46394806
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g40290

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G54190	AT	Annotation by Michelle Graham. TAIR10: Transducin/WD40 repeat-like superfamily protein \| chr3:20061759-20063880 REVERSE LENGTH=467	SoyBase	E_val: 0	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0010413	GO-bp	Annotation by Michelle Graham. GO Biological Process: glucuronoxylan metabolic process	SoyBase	N/A	ISS
GO:0045492	GO-bp	Annotation by Michelle Graham. GO Biological Process: xylan biosynthetic process	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
UniRef100_I1JYE3	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JYE3_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q9C5G8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: AT3g54190/F24B22_150 n=1 Tax=Arabidopsis thaliana RepID=Q9C5G8_ARATH	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma04g40290

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g40290

Paralog	Evidence	Comments
Glyma06g14500	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g40290 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g224900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g40290

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma04g40290

Limit To All Plant Sequences

>Glyma04g40290.1   sequence type=CDS   gene model=Glyma04g40290   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAGGTGGCAGGAGAATTACGGTGAGTCCTCGACCTTGCTGCGGCCGCAGAATCGTTGCCGCAAAGAAGAGACCGCGTGCGAACGATGGCTTCGTCAACAGCGTCAAGAAACTCCAGAGACGCGAAATCAGCTCCAAGCGTGATCGCGCTTTCACCATGAGCGATGCTCAGGAGAGATTCCGGAATATTCGCTTGCAGGAAGAATATGATACACATGATCCAAAAGGTCCTTCATCTATGGTGTTGCAATTTCTGAGAAAAAGATCAAAGATTATTGAGATTGTAGCAGCACGCGATATTGTTTTTGCTCTTGCACAATCAGGTGTTTGTGCGGCATTTAGCCGAGAGAACAATCAACGGATATGCTTTTTGAACGTCAGTGCTGATGAAGTTATAAGAAGTCTGTTTTATAACAAAAATAACGACTCACTTATCACAGTTTCTGTATATGCTTCAGACAGTTACAGTTCTTTGAAATGCAGAAGCACAAGGATCGAATATATAAGGAGGGGTACACCAGATGCTGGCTTTGCTCTTTTTGAATCTGAGTCTCTGAAGTGGCCAGGTTTTGTAGAGTTTGATGATGTAAATGGGAAGGTATTAACATACTCTGCTCAAGACAGCATATACAAGGTATTTGACCTAAAAAACTATACAATGCTGTACTCTATTTCTGATAAAAATGTCCAAGAGATTAAGATCAGCCCGGGAATCATGTTGTTGATTTATGCTAAAGCAAGTAGCCATGTTCCGCTTAAAATCCTTTCAATAGAAGATGGTACTGTTTTGAAGTCATTCAGCCATCTCCTTTATCGGAATAAGAAGGTAGATTTTATTGAACAGTTCAATGAAAAGCTACTCGTAAAGCAAGAAAATGAGAATCTCCAGATTCTTGATGTTCGGACTTTTGAACACACAGAAGTTTGCAGAAGTGAATTTATGACACCATCTGCATTTATTTTTCTATATGAGAACCAATTGTTCCTGACATTTCGAAATCGAACTGTGGCTGTGTGGAACTTCCGTGGAGAGCTGGTAACTTCTTTTGAGGATCACCTCTTGTGGCATCCTGACTGCAACACCAACAATATATATATAACCAGTGACCAGGATCTTATCATATCCTACTGTAAAGCTGATTCTGATGATTCATTGTCTGAAGGAAATGCAGGTTCCATCAACGTCAGCAACATCTTAACTGGCAAGTGTCTGGCCAAAATAAGAGCAAGCAACAGCTTTCCAGTGGATAACAATTGCAGTTGCAGTGACAAACCTTCTCGTAGCTATTGTTGTAATTCAAAGAAGAGAAAACATGGCTCCAAGATGAGGAGCACAGTTGCAGAAGCTTTGGAAGACATTACTGCTCTCTTCTATGATGAAGAGCGCAATGAAATCTATACAGGCAACAGGCTTGGGCTAGTTCATGTCTGGTCTAACTGA

Predicted protein sequences of Glyma04g40290

Limit To All Plant Sequences

>Glyma04g40290.1   sequence type=predicted peptide   gene model=Glyma04g40290   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEGGRRITVSPRPCCGRRIVAAKKRPRANDGFVNSVKKLQRREISSKRDRAFTMSDAQERFRNIRLQEEYDTHDPKGPSSMVLQFLRKRSKIIEIVAARDIVFALAQSGVCAAFSRENNQRICFLNVSADEVIRSLFYNKNNDSLITVSVYASDSYSSLKCRSTRIEYIRRGTPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKNVQEIKISPGIMLLIYAKASSHVPLKILSIEDGTVLKSFSHLLYRNKKVDFIEQFNEKLLVKQENENLQILDVRTFEHTEVCRSEFMTPSAFIFLYENQLFLTFRNRTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDSLSEGNAGSINVSNILTGKCLAKIRASNSFPVDNNCSCSDKPSRSYCCNSKKRKHGSKMRSTVAEALEDITALFYDEERNEIYTGNRLGLVHVWSN*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain