Report for Sequence Feature Glyma04g40260
Feature Type: gene_model
Chromosome: Gm04
Start: 46369833
stop: 46371049
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma04g40260
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT2G40815 AT
Annotation by Michelle Graham. TAIR10: Calcium-dependent lipid-binding (CaLB domain) family protein | chr2:17034736-17036110 REVERSE LENGTH=367
SoyBase E_val: 5.00E-45 ISS
PTHR26369 Panther
FAMILY NOT NAMED
JGI ISS
PTHR26369:SF18 Panther
JGI ISS
PF00168 PFAM
C2 domain
JGI ISS
UniRef100_F4IIZ8 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Calcium-dependent lipid-binding (CaLB domain) family protein n=1 Tax=Arabidopsis thaliana RepID=F4IIZ8_ARATH
SoyBase E_val: 2.00E-42 ISS
UniRef100_I1JYE0 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1JYE0_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma04g40260
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma04g40260
Paralog Evidence Comments
Glyma06g14521 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma04g40260 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.04g224600 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma04g40260
Coding sequences of Glyma04g40260
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma04g40260.2 sequence type=CDS gene model=Glyma04g40260 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGGGATTATATGGGTGGAGGTCTGCTTGATATCTGCACATGGACTCCAGCTTTCAACCTCACTTTGGAAGCGTCAATGGTTTGCTGTTGGGTGGATTGATCATAATAGCAAATATTGCACCAAAGTTGTTAATTCTGGGAATGCAAATCCTGTATGGAGAACCAAGTTTGTCATTCCTGTTGATGACTCGGTGTCAAACATCCAAGATTTGGCACTGAACGTGGAAGTTTACAGTATAGACCCCGTTTTCTTCACGGAAAAGCTTCTAGGCTCAGCAACAGTTTTTCTGAGAGAGTTTCTTGTCAAGCGGGTAAAGAATTCTGAGGTGTCAAAACCTAGGCAAAAGGAAGTTGGAAGCTACCAATTACGAAAGAAAAAATCCAGCAAACCAAGAGGTTTCATTGATATTTTAATTCGTATTTCTGACAAAAAGAAAGAGCCAAATTCCCACCCAGGTAGCAAGGAAGGAATTTTGCTCTTAGATGATGGTGATGGTACCCAGTTGACCATAGAGGAAGGAATAAGGCAAGTCTATCCACAGAAGCCCCAAGTTTCAATTCATCAGCCAGAAAAAGATCATGTACAAACAAATGTCCCAGACTACCATTCAGTGCCATTCGCCACTACAGACTATTATGATCCATATGTGGGTGAAGCAAGCAACCATGAGATGGGTGAACCAAGCTACCATGAGGTGGCTGGACCAAGCTATCTACTGCCTAGAACAATAACGCCTCCTCCACCACCCCCACCATCAAATGTTGGCTATATTCCAACTTTTCTCCCAAGAAATGATGGCTTGTCTCCAAGCTACACAGAGATGTCAACATCCAGGGCAGCTCCTGGTCAGAGGGTACCTGCAGGAGTTGCAATGGGGTTAGGTGCTGGAGCACTAGCTGCTGGTGCTATAATATTTGGTGATGACTTCATGTCAGGATTTGATGTTCCTCCGGGCATAGGAGATTCTAGCTTCAACAGAGGAATTGATCCTGCTTTCTGA
Predicted protein sequences of Glyma04g40260
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma04g40260.2 sequence type=predicted peptide gene model=Glyma04g40260 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MGIIWVEVCLISAHGLQLSTSLWKRQWFAVGWIDHNSKYCTKVVNSGNANPVWRTKFVIPVDDSVSNIQDLALNVEVYSIDPVFFTEKLLGSATVFLREFLVKRVKNSEVSKPRQKEVGSYQLRKKKSSKPRGFIDILIRISDKKKEPNSHPGSKEGILLLDDGDGTQLTIEEGIRQVYPQKPQVSIHQPEKDHVQTNVPDYHSVPFATTDYYDPYVGEASNHEMGEPSYHEVAGPSYLLPRTITPPPPPPPSNVGYIPTFLPRNDGLSPSYTEMSTSRAAPGQRVPAGVAMGLGAGALAAGAIIFGDDFMSGFDVPPGIGDSSFNRGIDPAF*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
