Glyma04g40170 - SoyBase

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Report for Sequence Feature Glyma04g40170

Feature Type:	gene_model
Chromosome:	Gm04
Start:	46302959
stop:	46306391
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g40170

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G10870	AT	Annotation by Michelle Graham. TAIR10: methyl esterase 17 \| chr3:3401228-3402612 REVERSE LENGTH=276	SoyBase	E_val: 8.00E-121	ISS
GO:0033473	GO-bp	Annotation by Michelle Graham. GO Biological Process: indoleacetic acid conjugate metabolic process	SoyBase	N/A	ISS
GO:0048367	GO-bp	Annotation by Michelle Graham. GO Biological Process: shoot development	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0016787	GO-mf	Annotation by Michelle Graham. GO Molecular Function: hydrolase activity	SoyBase	N/A	ISS
GO:0016788	GO-mf	Annotation by Michelle Graham. GO Molecular Function: hydrolase activity, acting on ester bonds	SoyBase	N/A	ISS
GO:0080030	GO-mf	Annotation by Michelle Graham. GO Molecular Function: methyl indole-3-acetate esterase activity	SoyBase	N/A	ISS
PTHR10992	Panther	ALPHA/BETA HYDROLASE RELATED	JGI		ISS
PTHR10992:SF56	Panther	gb def: abhydrolase, alpha/beta hydrolase fold [bacillus anthracis a2012]	JGI		ISS
PF03283	PFAM	Pectinacetylesterase	JGI		ISS
UniRef100_I1JYD1	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1JYD1_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q9SG92	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Methylesterase 17 n=1 Tax=Arabidopsis thaliana RepID=MES17_ARATH	SoyBase	E_val: 4.00E-118	ISS

Expression Patterns of Glyma04g40170

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma04g40170 not represented in the dataset	Glyma04g40170 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g40170

Paralog	Evidence	Comments
Glyma06g14640	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g40170 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g223700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g40170

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma04g40170

Limit To All Plant Sequences

>Glyma04g40170.2   sequence type=transcript   gene model=Glyma04g40170   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CGATGAATGGAAATGACCCCAAGCCAAGAGAGAATATATATATATATATATAAAAACCTCTGAATATCCGAATAATATTAAGAAGGAAAGTTACAAAGATAAACGTCATTACTTCTGCTGACCCTTCAACGCATACTATTGATTGTTATCCTATATATTCTCACTCACCAGCAACGTTGAAAGCAAAACGATAGTGACCATGCCTAAGAGAGTGGAAGGAGTTGTTGCCATGAAGCAGCACTTTGTGCTTGTACATGGCATAGGTGGAGGAAGTTGGTGCTGGTACAAAATCCGGTGCCTTATGGAGAATTCAGGCTGCAAGGTCTCATGCATAGACCTCAAAAGTGCTGGAATTGATCAATCTGATGCTGATTCCGTGCTATCTTTTGATGATTACAATAAACCACTTATGGATTTCATGTCTGATTTGCCTGAGAACGAACAGGTTATATTGGTGGGGCACAGCGCTGGAGGGTTGAGCATTACTCAGGCCTGTCACAAGTTTGCAAACAAGATTCGTTTAGCTGTTTATGTGGCAGCAACTATGCTCAAGTTCGGATTCCTGACCGATCAAGATCTTAAAGATTGTCTCTGGAATCTTGAAGGTTTTCCAGCAAGGACGGTGCTGATGCTCTCTCTCAAAATAATTGGTTGCCAACTGTCTTCAAAAACAGATTATAGTTCTTAGCCAACTCTGAGGCTCACCAAATTATGCTTCTACCTACTCCCAAAATTTTCTCAAGAATAGCACCATATGCAAACAAATCTGCAGCTGTTATGCAATATCTGAGTTTGTTTGTTTTTCTTTTTTTAATAGGGAATTCCATTCATTTCTCTATTCACGTTATCCACCTCTTTTCTTTCCTTAATTTGTATTGGACACAATTCTTCTTAATTTTTTTTAGCTTATTAATGGAATTATCAATTTAGTCAATGACCTTTTGCTACTCACCTTGCCTCTTTTTCAGGCTTTTACAACAAACTAGTTGTAATTTAATAATGGTCAGTAAAATGGGCAAGACATTCTGACCCGGACCCGGGTTTTTTATGGTTTGTTTTATATTTACTTAATTCTGAAAAATGATGAAAAGAAATCTAATGTTAACCAACCTCCTATATAAAAGCCTAAAACTAAAATGTGTACTAAGCAAGCTAATTGTCTATTTAAAATCATTATAGCAACTTTAATAAAAAATTTCTTCTATCTGTCTATTTCACTGATCAATTATCATCAATAATTATGTGTCATCTAAACTCCTATAATATGTAATCCTTGAATTAATCATTGTAAGCCTTTGGAGACAAGAGAGTCAAATAAATTTCTTGCTTTCTTTTCGTTCCCTCAATCCGACAACCCTGTTTATTCCACAGATCCACTTTGTCCTCAGGAGGTAATAAATAGTAACAAAATTTCACTGTGTTCAATGTACCACTTATCATTGAAAAGTAGTGACAAAAAATTCACGAGCCTAATTAATTAGACTATATGACAGAATA

>Glyma04g40170.3   sequence type=transcript   gene model=Glyma04g40170   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CGATGAATGGAAATGACCCCAAGCCAAGAGAGAATATATATATATATATATAAAAACCTCTGAATATCCGAATAATATTAAGAAGGAAAGTTACAAAGATAAACGTCATTACTTCTGCTGACCCTTCAACGCATACTATTGATTGTTATCCTATATATTCTCACTCACCAGCAACGTTGAAAGCAAAACGATAGTGACCATGCCTAAGAGAGTGGAAGGAGTTGTTGCCATGAAGCAGCACTTTGTGCTTGTACATGGCATAGGTGGAGGAAGTTGGTGCTGGTACAAAATCCGGTGCCTTATGGAGAATTCAGGCTGCAAGGTCTCATGCATAGACCTCAAAAGTGCTGGAATTGATCAATCTGATGCTGATTCCGTGCTATCTTTTGATGATTACAATAAACCACTTATGGATTTCATGTCTGATTTGCCTGAGAACGAACAGGTTATATTGGTGGGGCACAGCGCTGGAGGGTTGAGCATTACTCAGGCCTGTCACAAGTTTGCAAACAAGATTCGTTTAGCTGTTTATGTGGCAGCAACTATGCTCAAGTTCGGATTCCTGACCGATCAAGATCTTAAAGATGGGGTGCCTGATTTATCCGAGTATGGGGATGTGTATGAGCTGGGATTTGGATTGGGACATGATAAGCCTCCAACCAGTGCTTTGGTGAAGAAAGAATTTCAACACAAAATCATCTATCCTTTGAGCCCTCACGAGTGCAATGATGGGTCAGGATTCGACATTGGCCGCGATGCTGTTGAGGCCAGGGCCATTGCTGGCATTGACGAGTGCTCAATTCAGAGAAGATGGTGATGGTGATGGTGAAGTGGAGAAGGTTTGCCGCGTGTACATAAGGACAAGGCATGACAAGGTGGTGAAGCCAGAGCAACAGGAAGCCATGATAAAGAGGTGGCCACCATCCACTTCATATGAACTCGACAGCGACCATAGCCCCTTCTTCTCCACCCCATTCCTTCTCTTTGGCTTGCTTCTTAAAGCTGCTGCTGCCTTGGACGCAATTAACTAGTTCAGGATTGGGCTTCCATGCATGCCTTTTCTTCGTTGCTCTCCAAAAGTTTCATGTGGGTAATTAATTTCATAAATATATCTAGTTTTATACATTGGTTGTAATTATCACTAATAATATATGAATCACTATTCTATGTAGTTGTACCAGGATTTGTATTGCATTAAAAATGGAAGTTTCTATTACTTGGCTTTATTTCTGGTAATAAAATAATCAAATATATGTGATTCATACAC

>Glyma04g40170.4   sequence type=transcript   gene model=Glyma04g40170   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTGCCAGTGGTAAATAATGGATATAATATAAAGTTTTCTTTTCTGGTTTGAATGAAGCAGGGGGTGCCTGATTTATCCGAGTATGGGGATGTGTATGAGCTGGGATTTGGATTGGGACATGATAAGCCTCCAACCAGTGCTTTGGTGAAGAAAGAATTTCAACACAAAATCATCTATCCTTTGAGCCCTCACGAGGATTCGACATTGGCCGCGATGCTGTTGAGGCCAGGGCCATTGCTGGCATTGACGAGTGCTCAATTCAGAGAAGATGGTGATGGTGATGGTGAAGTGGAGAAGGTTTGCCGCGTGTACATAAGGACAAGGCATGACAAGGTGGTGAAGCCAGAGCAACAGGAAGCCATGATAAAGAGGTGGCCACCATCCACTTCATATGAACTCGACAGCGACCATAGCCCCTTCTTCTCCACCCCATTCCTTCTCTTTGGCTTGCTTCTTAAAGCTGCTGCTGCCTTGGACGCAATTAACTAGTTCAGGATTGGGCTTCCATGCATGCCTTTTCTTCGTTGCTCTCCAAAAGTTTCATGTGGGTAATTAATTTCATAAATATATCTAGTTTTATACATTGGTTGTAATTATCACTAATAATATATGAATCACTATTCTATGTAGTTGTACCAGGATTTGTATTGCATTAAAAATGGAAGTTTCTATTACTTGGCTTTATTTCTGGTAATAAAATAATCAAATATATGTGATTCATACAC

>Glyma04g40170.5   sequence type=transcript   gene model=Glyma04g40170   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GAAGGAGTTGTTGCCATGAAGCAGCACTTTGTGCTTGTACATGGCATAGGTGGAGGAAGTTGGTGCTGGTACAAAATCCGGTGCCTTATGGAGAATTCAGGCTGCAAGGTCTCATGCATAGACCTCAAAAGTGCTGGAATTGATCAATCTGATGCTGATTCCGTGCTATCTTTTGATGATTACAATAAACCACTTATGGATTTCATGTCTGATTTGCCTGAGAACGAACAGGTTATATTGGTGGGGCACAGCGCTGGAGGGTTGAGCATTACTCAGGCCTGTCACAAGTTTGCAAACAAGATTCGTTTAGCTGTTTATGTGGCAGCAACTATGCTCAAGTTCGGATTCCTGACCGATCAAGATCTTAAAGATGTGAGAGAATCCTTTCCTTTTCATTAACTCTCTTGTTTGTTCTTATTCTTTGTTTGTGTTGGTTTGCTAACAAGATTATTTGAATTCA

Coding sequences of Glyma04g40170

Limit To All Plant Sequences

>Glyma04g40170.1   sequence type=CDS   gene model=Glyma04g40170   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCCTAAGAGAGTGGAAGGAGTTGTTGCCATGAAGCAGCACTTTGTGCTTGTACATGGCATAGGTGGAGGAAGTTGGTGCTGGTACAAAATCCGGTGCCTTATGGAGAATTCAGGCTGCAAGGTCTCATGCATAGACCTCAAAAGTGCTGGAATTGATCAATCTGATGCTGATTCCGTGCTATCTTTTGATGATTACAATAAACCACTTATGGATTTCATGTCTGATTTGCCTGAGAACGAACAGGTTATATTGGTGGGGCACAGCGCTGGAGGGTTGAGCATTACTCAGGCCTGTCACAAGTTTGCAAACAAGATTCGTTTAGCTGTTTATGTGGCAGCAACTATGCTCAAGTTCGGATTCCTGACCGATCAAGATCTTAAAGATGGGGTGCCTGATTTATCCGAGTATGGGGATGTGTATGAGCTGGGATTTGGATTGGGACATGATAAGCCTCCAACCAGTGCTTTGGTGAAGAAAGAATTTCAACACAAAATCATCTATCCTTTGAGCCCTCACGAGGATTCGACATTGGCCGCGATGCTGTTGAGGCCAGGGCCATTGCTGGCATTGACGAGTGCTCAATTCAGAGAAGATGGTGATGGTGATGGTGAAGTGGAGAAGGTTTGCCGCGTGTACATAAGGACAAGGCATGACAAGGTGGTGAAGCCAGAGCAACAGGAAGCCATGATAAAGAGGTGGCCACCATCCACTTCATATGAACTCGACAGCGACCATAGCCCCTTCTTCTCCACCCCATTCCTTCTCTTTGGCTTGCTTCTTAAAGCTGCTGCTGCCTTGGACGCAATTAACTAG

>Glyma04g40170.2   sequence type=CDS   gene model=Glyma04g40170   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCCTAAGAGAGTGGAAGGAGTTGTTGCCATGAAGCAGCACTTTGTGCTTGTACATGGCATAGGTGGAGGAAGTTGGTGCTGGTACAAAATCCGGTGCCTTATGGAGAATTCAGGCTGCAAGGTCTCATGCATAGACCTCAAAAGTGCTGGAATTGATCAATCTGATGCTGATTCCGTGCTATCTTTTGATGATTACAATAAACCACTTATGGATTTCATGTCTGATTTGCCTGAGAACGAACAGGTTATATTGGTGGGGCACAGCGCTGGAGGGTTGAGCATTACTCAGGCCTGTCACAAGTTTGCAAACAAGATTCGTTTAGCTGTTTATGTGGCAGCAACTATGCTCAAGTTCGGATTCCTGACCGATCAAGATCTTAAAGATTGTCTCTGGAATCTTGAAGGTTTTCCAGCAAGGACGGTGCTGATGCTCTCTCTCAAAATAATTGGTTGCCAACTGTCTTCAAAAACAGATTATAGTTCTTAG

>Glyma04g40170.3   sequence type=CDS   gene model=Glyma04g40170   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCCTAAGAGAGTGGAAGGAGTTGTTGCCATGAAGCAGCACTTTGTGCTTGTACATGGCATAGGTGGAGGAAGTTGGTGCTGGTACAAAATCCGGTGCCTTATGGAGAATTCAGGCTGCAAGGTCTCATGCATAGACCTCAAAAGTGCTGGAATTGATCAATCTGATGCTGATTCCGTGCTATCTTTTGATGATTACAATAAACCACTTATGGATTTCATGTCTGATTTGCCTGAGAACGAACAGGTTATATTGGTGGGGCACAGCGCTGGAGGGTTGAGCATTACTCAGGCCTGTCACAAGTTTGCAAACAAGATTCGTTTAGCTGTTTATGTGGCAGCAACTATGCTCAAGTTCGGATTCCTGACCGATCAAGATCTTAAAGATGGGGTGCCTGATTTATCCGAGTATGGGGATGTGTATGAGCTGGGATTTGGATTGGGACATGATAAGCCTCCAACCAGTGCTTTGGTGAAGAAAGAATTTCAACACAAAATCATCTATCCTTTGAGCCCTCACGAGTGCAATGATGGGTCAGGATTCGACATTGGCCGCGATGCTGTTGAGGCCAGGGCCATTGCTGGCATTGACGAGTGCTCAATTCAGAGAAGATGGTGA

>Glyma04g40170.4   sequence type=CDS   gene model=Glyma04g40170   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAGCAGGGGGTGCCTGATTTATCCGAGTATGGGGATGTGTATGAGCTGGGATTTGGATTGGGACATGATAAGCCTCCAACCAGTGCTTTGGTGAAGAAAGAATTTCAACACAAAATCATCTATCCTTTGAGCCCTCACGAGGATTCGACATTGGCCGCGATGCTGTTGAGGCCAGGGCCATTGCTGGCATTGACGAGTGCTCAATTCAGAGAAGATGGTGATGGTGATGGTGAAGTGGAGAAGGTTTGCCGCGTGTACATAAGGACAAGGCATGACAAGGTGGTGAAGCCAGAGCAACAGGAAGCCATGATAAAGAGGTGGCCACCATCCACTTCATATGAACTCGACAGCGACCATAGCCCCTTCTTCTCCACCCCATTCCTTCTCTTTGGCTTGCTTCTTAAAGCTGCTGCTGCCTTGGACGCAATTAACTAG

>Glyma04g40170.5   sequence type=CDS   gene model=Glyma04g40170   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAGCAGCACTTTGTGCTTGTACATGGCATAGGTGGAGGAAGTTGGTGCTGGTACAAAATCCGGTGCCTTATGGAGAATTCAGGCTGCAAGGTCTCATGCATAGACCTCAAAAGTGCTGGAATTGATCAATCTGATGCTGATTCCGTGCTATCTTTTGATGATTACAATAAACCACTTATGGATTTCATGTCTGATTTGCCTGAGAACGAACAGGTTATATTGGTGGGGCACAGCGCTGGAGGGTTGAGCATTACTCAGGCCTGTCACAAGTTTGCAAACAAGATTCGTTTAGCTGTTTATGTGGCAGCAACTATGCTCAAGTTCGGATTCCTGACCGATCAAGATCTTAAAGATGTGAGAGAATCCTTTCCTTTTCATTAA

Predicted protein sequences of Glyma04g40170

Limit To All Plant Sequences

>Glyma04g40170.1   sequence type=predicted peptide   gene model=Glyma04g40170   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MPKRVEGVVAMKQHFVLVHGIGGGSWCWYKIRCLMENSGCKVSCIDLKSAGIDQSDADSVLSFDDYNKPLMDFMSDLPENEQVILVGHSAGGLSITQACHKFANKIRLAVYVAATMLKFGFLTDQDLKDGVPDLSEYGDVYELGFGLGHDKPPTSALVKKEFQHKIIYPLSPHEDSTLAAMLLRPGPLLALTSAQFREDGDGDGEVEKVCRVYIRTRHDKVVKPEQQEAMIKRWPPSTSYELDSDHSPFFSTPFLLFGLLLKAAAALDAIN*

>Glyma04g40170.2   sequence type=predicted peptide   gene model=Glyma04g40170   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MPKRVEGVVAMKQHFVLVHGIGGGSWCWYKIRCLMENSGCKVSCIDLKSAGIDQSDADSVLSFDDYNKPLMDFMSDLPENEQVILVGHSAGGLSITQACHKFANKIRLAVYVAATMLKFGFLTDQDLKDCLWNLEGFPARTVLMLSLKIIGCQLSSKTDYSS*

>Glyma04g40170.3   sequence type=predicted peptide   gene model=Glyma04g40170   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MPKRVEGVVAMKQHFVLVHGIGGGSWCWYKIRCLMENSGCKVSCIDLKSAGIDQSDADSVLSFDDYNKPLMDFMSDLPENEQVILVGHSAGGLSITQACHKFANKIRLAVYVAATMLKFGFLTDQDLKDGVPDLSEYGDVYELGFGLGHDKPPTSALVKKEFQHKIIYPLSPHECNDGSGFDIGRDAVEARAIAGIDECSIQRRW*

>Glyma04g40170.4   sequence type=predicted peptide   gene model=Glyma04g40170   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKQGVPDLSEYGDVYELGFGLGHDKPPTSALVKKEFQHKIIYPLSPHEDSTLAAMLLRPGPLLALTSAQFREDGDGDGEVEKVCRVYIRTRHDKVVKPEQQEAMIKRWPPSTSYELDSDHSPFFSTPFLLFGLLLKAAAALDAIN*

>Glyma04g40170.5   sequence type=predicted peptide   gene model=Glyma04g40170   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKQHFVLVHGIGGGSWCWYKIRCLMENSGCKVSCIDLKSAGIDQSDADSVLSFDDYNKPLMDFMSDLPENEQVILVGHSAGGLSITQACHKFANKIRLAVYVAATMLKFGFLTDQDLKDVRESFPFH*

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