Glyma04g40121 - SoyBase

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Report for Sequence Feature Glyma04g40121

Feature Type:	gene_model
Chromosome:	Gm04
Start:	46249199
stop:	46253557
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g40121

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G40740	AT	Annotation by Michelle Graham. TAIR10: WRKY DNA-binding protein 55 \| chr2:16997177-16999276 FORWARD LENGTH=292	SoyBase	E_val: 2.00E-56	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
GO:0043565	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding	SoyBase	N/A	ISS
PF03106	PFAM	WRKY DNA -binding domain	JGI		ISS
UniRef100_G7K641	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: WRKY transcription factor-30 n=1 Tax=Medicago truncatula RepID=G7K641_MEDTR	SoyBase	E_val: 3.00E-94	ISS
UniRef100_UPI000233A069	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233A069 related cluster n=1 Tax=unknown RepID=UPI000233A069	SoyBase	E_val: 0	ISS

Proteins Associated with Glyma04g40121

Locus	Gene Symbol	Protein Name
	WRKY84	WRKY Transcription Factor

Expression Patterns of Glyma04g40121

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma04g40121 not represented in the dataset	Glyma04g40121 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g40121

Paralog	Evidence	Comments
Glyma06g14731	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g40121 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g223200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g40121

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma04g40121

Limit To All Plant Sequences

>Glyma04g40121.1   sequence type=CDS   gene model=Glyma04g40121   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAGAGGTAATAAATTCGATTCGACGCGCTTGTGTACTGGCCCAAAACCTTGAACAAGACCTACCCAACTTGGCGAACCAACCAGCTATGCTGTCCTTGTCCATTGATCAGATAACTGAGGCTTTCAGTGGTGCCAAGGAAAAGATGTTATTATTCTCCCGACAGAACCAAACCTCGGACGAATCTCCTCCGACGTTGGTTCATGAAACGACCACACAGCAGTCTCAGATGGATGCTAGTCTAATGCAGGAATGGCTAAGGTCTAGTCATGCACTGACAATGGATCAGTTGTTTCAAATGCATCAGTTTCATGCTGCAAGGAGCACGCTGCAGCAGATTGGTGAAATGGGAGGGAAAGATGGGGAAGATTCTGAGAGAAACAAGGGATCTGAAGGGGAAGTGCAGGGAATCCACGCGTCACCCTCGCGGCCACGAAAAAGGGAAGCTAATCAAGAGAAGAGAAAAGTGATGGTTCCTGCCCCACAGTTTGGAAACACGGAGGTGCCACCAGAGGATGGCTACACTTGGAGGAAATATGGCCAGAAAGAAATACTTGGCTCCAAGTACCCAAGGAGTTACTACAGGTGCACACACCAAAAGTTATATGAATGCCAAGCCAAGAAGCAAGTGCAAAGACTTGATCACAACCCTAACATATTCGAAGTAACATATAGAGGAAACCACACATGCCACATGTCCTCCACAGCACCATCATCAGTTCCACCACAACAACTACTGGTGGACATATCACAAAATAATAGTAGCACCATTTCCTCTCAGTTGTCTCCTACAATGAACCTCAGCCTCCACCCTGGTGGCGGAGGCGCCGCCAGCAGTGGCAGTGGTGGAGCCTCCACTTCAAGATACGGTGGTGATTATCCTGTGGTGGATATGGCTGATGCTATGTTCAACTCTGGTAGCAGCAGTGGTAACAACAGCATGGAATTTCTCTTCTCTCCCGCTGAGATAAAAGTGATCCAAAAATTGAATAGAACAAGAGATGAAGATTAG

Predicted protein sequences of Glyma04g40121

Limit To All Plant Sequences

>Glyma04g40121.1   sequence type=predicted peptide   gene model=Glyma04g40121   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEEVINSIRRACVLAQNLEQDLPNLANQPAMLSLSIDQITEAFSGAKEKMLLFSRQNQTSDESPPTLVHETTTQQSQMDASLMQEWLRSSHALTMDQLFQMHQFHAARSTLQQIGEMGGKDGEDSERNKGSEGEVQGIHASPSRPRKREANQEKRKVMVPAPQFGNTEVPPEDGYTWRKYGQKEILGSKYPRSYYRCTHQKLYECQAKKQVQRLDHNPNIFEVTYRGNHTCHMSSTAPSSVPPQQLLVDISQNNSSTISSQLSPTMNLSLHPGGGGAASSGSGGASTSRYGGDYPVVDMADAMFNSGSSSGNNSMEFLFSPAEIKVIQKLNRTRDED*

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