Report for Sequence Feature Glyma04g40121
Feature Type: gene_model
Chromosome: Gm04
Start: 46249199
stop: 46253557
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma04g40121
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT2G40740 AT
Annotation by Michelle Graham. TAIR10: WRKY DNA-binding protein 55 | chr2:16997177-16999276 FORWARD LENGTH=292
SoyBase E_val: 2.00E-56 ISS
GO:0006355 GO-bp
Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0003700 GO-mf
Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity
SoyBase N/A ISS
GO:0043565 GO-mf
Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding
SoyBase N/A ISS
PF03106 PFAM
WRKY DNA -binding domain
JGI ISS
UniRef100_G7K641 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: WRKY transcription factor-30 n=1 Tax=Medicago truncatula RepID=G7K641_MEDTR
SoyBase E_val: 3.00E-94 ISS
UniRef100_UPI000233A069 UniRef
Annotation by Michelle Graham. Best UniRef hit: UPI000233A069 related cluster n=1 Tax=unknown RepID=UPI000233A069
SoyBase E_val: 0 ISS
Proteins Associated with Glyma04g40121
Locus Gene Symbol Protein Name
WRKY84 WRKY Transcription Factor
Expression Patterns of Glyma04g40121
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma04g40121
Paralog Evidence Comments
Glyma06g14731 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma04g40121 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.04g223200 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma04g40121
Coding sequences of Glyma04g40121
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma04g40121.1 sequence type=CDS gene model=Glyma04g40121 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGAAGAGGTAATAAATTCGATTCGACGCGCTTGTGTACTGGCCCAAAACCTTGAACAAGACCTACCCAACTTGGCGAACCAACCAGCTATGCTGTCCTTGTCCATTGATCAGATAACTGAGGCTTTCAGTGGTGCCAAGGAAAAGATGTTATTATTCTCCCGACAGAACCAAACCTCGGACGAATCTCCTCCGACGTTGGTTCATGAAACGACCACACAGCAGTCTCAGATGGATGCTAGTCTAATGCAGGAATGGCTAAGGTCTAGTCATGCACTGACAATGGATCAGTTGTTTCAAATGCATCAGTTTCATGCTGCAAGGAGCACGCTGCAGCAGATTGGTGAAATGGGAGGGAAAGATGGGGAAGATTCTGAGAGAAACAAGGGATCTGAAGGGGAAGTGCAGGGAATCCACGCGTCACCCTCGCGGCCACGAAAAAGGGAAGCTAATCAAGAGAAGAGAAAAGTGATGGTTCCTGCCCCACAGTTTGGAAACACGGAGGTGCCACCAGAGGATGGCTACACTTGGAGGAAATATGGCCAGAAAGAAATACTTGGCTCCAAGTACCCAAGGAGTTACTACAGGTGCACACACCAAAAGTTATATGAATGCCAAGCCAAGAAGCAAGTGCAAAGACTTGATCACAACCCTAACATATTCGAAGTAACATATAGAGGAAACCACACATGCCACATGTCCTCCACAGCACCATCATCAGTTCCACCACAACAACTACTGGTGGACATATCACAAAATAATAGTAGCACCATTTCCTCTCAGTTGTCTCCTACAATGAACCTCAGCCTCCACCCTGGTGGCGGAGGCGCCGCCAGCAGTGGCAGTGGTGGAGCCTCCACTTCAAGATACGGTGGTGATTATCCTGTGGTGGATATGGCTGATGCTATGTTCAACTCTGGTAGCAGCAGTGGTAACAACAGCATGGAATTTCTCTTCTCTCCCGCTGAGATAAAAGTGATCCAAAAATTGAATAGAACAAGAGATGAAGATTAG
Predicted protein sequences of Glyma04g40121
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma04g40121.1 sequence type=predicted peptide gene model=Glyma04g40121 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MEEVINSIRRACVLAQNLEQDLPNLANQPAMLSLSIDQITEAFSGAKEKMLLFSRQNQTSDESPPTLVHETTTQQSQMDASLMQEWLRSSHALTMDQLFQMHQFHAARSTLQQIGEMGGKDGEDSERNKGSEGEVQGIHASPSRPRKREANQEKRKVMVPAPQFGNTEVPPEDGYTWRKYGQKEILGSKYPRSYYRCTHQKLYECQAKKQVQRLDHNPNIFEVTYRGNHTCHMSSTAPSSVPPQQLLVDISQNNSSTISSQLSPTMNLSLHPGGGGAASSGSGGASTSRYGGDYPVVDMADAMFNSGSSSGNNSMEFLFSPAEIKVIQKLNRTRDED*