SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G05230 | AT | Annotation by Michelle Graham. TAIR10: RING/U-box superfamily protein | chr5:1551593-1553543 FORWARD LENGTH=363 | SoyBase | E_val: 3.00E-88 | ISS |
| GO:0016567 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein ubiquitination | SoyBase | N/A | ISS |
| GO:0000151 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: ubiquitin ligase complex | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0004842 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ubiquitin-protein ligase activity | SoyBase | N/A | ISS |
| PF04564 | PFAM | U-box domain | JGI | ISS | |
| UniRef100_I1JYC0 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JYC0_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_Q6DBN5 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: U-box domain-containing protein 62 n=1 Tax=Arabidopsis thaliana RepID=PUB62_ARATH | SoyBase | E_val: 1.00E-85 | ISS |
|
Glyma04g40060 not represented in the dataset |
Glyma04g40060 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma06g14796 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.04g222600 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma04g40060.2 sequence type=transcript gene model=Glyma04g40060 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high CCTGCGAGCATGCGGAAAAAAATGGACAACCAACCATGAGGACTAATATCCCATCCCAGCACACTTCTTAACGACGTCGTTCCTCAACAAGCCAAAAACGACTCGTCGTACAATCCATCTCCCAGCAGCATCTGGGAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGCACTCTTTCTCGCTCGCGGCGAGTGTGAACACCAAACGGCGGCGTTCGCAGCAAACAGAGTCTCGAAACCCTAGTTCCCTATTCCTCCCATGTCCTCCGAAGACATCACTCTCGTACCCGACCAGAGGATCGAGAACGGTCTCAATTCCCCTCTCGTCTTCCAAGACGACCCTCTCCGCTTCAATTGCCCCACCCCGCACCAGCGTCGGGTCGGGGACCCGCCTCCGAAGACCCGCGAACTTGGCGCCTTCATCGACGACAACAAGATGTTCATCGACCGCGACCGCTTCTTCGCCGCCGCCCAGAACCCCGAATTCCGCCGCTACGCCGACTGCTCCGCCCGCCGCGACCCGCCCCACGCCCGCAATTGGAGCGCCACAGACGATGACGAAGAGTCTGACGACGACGACGAAGATGACGACGACGATGAAGCGGATGACACCGAAGTAGGAGGACTCGTTGGTGATGGAACCAAAAGCGAACTTAACAACAACAACAACAACAACGGTGGCGCTAATTTACCTGCTGTTGCAAACGGGAAAGCCCACTCTTACGTTTCTGGAAGAGAGCTATTGGTGAAGGATGGTGGTGATATTGGGCAATTGGTGCATAGCAATGTGAGTGGTGGTGATGAAGATCATCGGCAAGAGGGGTTAGGTAAGTCTCAGAATTCAGTTACCGTTGCTGAAACTGACTGTGAGGAGTACTATTCGCACTATCTTCACGGCGGCGAAGGGGCTTCTGGGCAGAAAGTGATGGTGGATGATAGTGGTTGTGGGTTTAGTGGGAGGAAGGATGCTATGTATTCGAGCGAGTCAGGGGAGTCACTCAGGGCAATTCTTTCAGATCCTGTCACGGGTGCTCTTATGGATGATGCTATGATATTACCATGTGGACATTCATTTGGTGGAGGTGGAATAGAGCATGCTATTAGAATGAAAGCTTGCTGCACTTGTTCTCAACCCACAACTGAGGAATCAATATCTCCAAACCTATCACTCCGGATTGCTGTGCAGGCATATCGTCGTGAAGAGGAGTCACAATTTTACCGGTCACCTAAAAGAAGAAGAGAGAGATTTGATCAGGACAGGGTGGTTTTGGAGATTCAGTTGTTATGGAACCATCAAGGAGTAGAGGTGTTCAGTTTCCATTTGCTGTGATGGACCGGGTTATCATAAAGGGAAATAAAAGGACACCACAACGCTTTGTTGGGCGCGAAGCTATTGTTACAACGCAATGCCTGAATGGATGGTATGTGGTGAAGACATTGGACAATGCAGAGAGTGTAAAGTTGCAGTATCGATCCCTTGCCAAGGTTATGGATGATCCTTCAAAACCTGCAGCCTCCAGCAAGATGCCACCTAATTGGCTTTAGATCTGCACTTCTGCAGCACAGTTCCGTGATCAAATACTTCTACACCAAGCTGATGCCACTAGATTTTTAGCGTTCAATGCTTACATACCTACAAAAATTCTTCTTTGTAATTCCATTGTTGTATTCCTTGCGAGAAAACTCTGCTAGCTGCTGAGTTTGTAAATATAGAAACCTTACCATGCTTTGTGCTAGTCAAGATTTTAGTATCTGCGTAATCATTTTGTTATAGATACACTGACAGAATATATATTCTCTTTTTTATTTTTTCTACATGAACAGATAAATGTTTGAGTGGAAATGGTTGTGACCATTATTAAACCATATTCGGCTTTAGACCTTGATGAGCTATATGAACATATTTCTTGTAACATATGT
>Glyma04g40060.1 sequence type=CDS gene model=Glyma04g40060 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTCCTCCGAAGACATCACTCTCGTACCCGACCAGAGGATCGAGAACGGTCTCAATTCCCCTCTCGTCTTCCAAGACGACCCTCTCCGCTTCAATTGCCCCACCCCGCACCAGCGTCGGGTCGGGGACCCGCCTCCGAAGACCCGCGAACTTGGCGCCTTCATCGACGACAACAAGATGTTCATCGACCGCGACCGCTTCTTCGCCGCCGCCCAGAACCCCGAATTCCGCCGCTACGCCGACTGCTCCGCCCGCCGCGACCCGCCCCACGCCCGCAATTGGAGCGCCACAGACGATGACGAAGAGTCTGACGACGACGACGAAGATGACGACGACGATGAAGCGGATGACACCGAAGTAGGAGGACTCGTTGGTGATGGAACCAAAAGCGAACTTAACAACAACAACAACAACAACGGTGGCGCTAATTTACCTGCTGTTGCAAACGGGAAAGCCCACTCTTACGTTTCTGGAAGAGAGCTATTGGTGAAGGATGGTGGTGATATTGGGCAATTGGTGCATAGCAATGTGAGTGGTGGTGATGAAGATCATCGGCAAGAGGGGTTAGGTAAGTCTCAGAATTCAGTTACCGTTGCTGAAACTGACTGTGAGGAGTACTATTCGCACTATCTTCACGGCGGCGAAGGGGCTTCTGGGCAGAAAGTGATGGTGGATGATAGTGGTTGTGGGTTTAGTGGGAGGAAGGATGCTATGTATTCGAGCGAGTCAGGGGAGTCACTCAGGGCAATTCTTTCAGATCCTGTCACGGGTGCTCTTATGGATGATGCTATGATATTACCATGTGGACATTCATTTGGTGGAGGTGGAATAGAGCATGCTATTAGAATGAAAGCTTGCTGCACTTGTTCTCAACCCACAACTGAGGAATCAATATCTCCAAACCTATCACTCCGGATTGCTGTGCAGGCATATCGTCGTGAAGAGGAGTCACAATTTTACCGGTCACCTAAAAGAAGAAGAGAGAGATTTGATCAGGGTGGTTTTGGAGATTCAGTTGTTATGGAACCATCAAGGAGTAGAGGTGTTCAGTTTCCATTTGCTGTGATGGACCGGGTTATCATAAAGGGAAATAAAAGGACACCACAACGCTTTGTTGGGCGCGAAGCTATTGTTACAACGCAATGCCTGAATGGATGGTATGTGGTGAAGACATTGGACAATGCAGAGAGTGTAAAGTTGCAGTATCGATCCCTTGCCAAGGTTATGGATGATCCTTCAAAACCTGCAGCCTCCAGCAAGATGCCACCTAATTGGCTTTAG >Glyma04g40060.2 sequence type=CDS gene model=Glyma04g40060 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTCCTCCGAAGACATCACTCTCGTACCCGACCAGAGGATCGAGAACGGTCTCAATTCCCCTCTCGTCTTCCAAGACGACCCTCTCCGCTTCAATTGCCCCACCCCGCACCAGCGTCGGGTCGGGGACCCGCCTCCGAAGACCCGCGAACTTGGCGCCTTCATCGACGACAACAAGATGTTCATCGACCGCGACCGCTTCTTCGCCGCCGCCCAGAACCCCGAATTCCGCCGCTACGCCGACTGCTCCGCCCGCCGCGACCCGCCCCACGCCCGCAATTGGAGCGCCACAGACGATGACGAAGAGTCTGACGACGACGACGAAGATGACGACGACGATGAAGCGGATGACACCGAAGTAGGAGGACTCGTTGGTGATGGAACCAAAAGCGAACTTAACAACAACAACAACAACAACGGTGGCGCTAATTTACCTGCTGTTGCAAACGGGAAAGCCCACTCTTACGTTTCTGGAAGAGAGCTATTGGTGAAGGATGGTGGTGATATTGGGCAATTGGTGCATAGCAATGTGAGTGGTGGTGATGAAGATCATCGGCAAGAGGGGTTAGGTAAGTCTCAGAATTCAGTTACCGTTGCTGAAACTGACTGTGAGGAGTACTATTCGCACTATCTTCACGGCGGCGAAGGGGCTTCTGGGCAGAAAGTGATGGTGGATGATAGTGGTTGTGGGTTTAGTGGGAGGAAGGATGCTATGTATTCGAGCGAGTCAGGGGAGTCACTCAGGGCAATTCTTTCAGATCCTGTCACGGGTGCTCTTATGGATGATGCTATGATATTACCATGTGGACATTCATTTGGTGGAGGTGGAATAGAGCATGCTATTAGAATGAAAGCTTGCTGCACTTGTTCTCAACCCACAACTGAGGAATCAATATCTCCAAACCTATCACTCCGGATTGCTGTGCAGGCATATCGTCGTGAAGAGGAGTCACAATTTTACCGGTCACCTAAAAGAAGAAGAGAGAGATTTGATCAGGACAGGGTGGTTTTGGAGATTCAGTTGTTATGGAACCATCAAGGAGTAGAGGTGTTCAGTTTCCATTTGCTGTGA
>Glyma04g40060.1 sequence type=predicted peptide gene model=Glyma04g40060 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSSEDITLVPDQRIENGLNSPLVFQDDPLRFNCPTPHQRRVGDPPPKTRELGAFIDDNKMFIDRDRFFAAAQNPEFRRYADCSARRDPPHARNWSATDDDEESDDDDEDDDDDEADDTEVGGLVGDGTKSELNNNNNNNGGANLPAVANGKAHSYVSGRELLVKDGGDIGQLVHSNVSGGDEDHRQEGLGKSQNSVTVAETDCEEYYSHYLHGGEGASGQKVMVDDSGCGFSGRKDAMYSSESGESLRAILSDPVTGALMDDAMILPCGHSFGGGGIEHAIRMKACCTCSQPTTEESISPNLSLRIAVQAYRREEESQFYRSPKRRRERFDQGGFGDSVVMEPSRSRGVQFPFAVMDRVIIKGNKRTPQRFVGREAIVTTQCLNGWYVVKTLDNAESVKLQYRSLAKVMDDPSKPAASSKMPPNWL* >Glyma04g40060.2 sequence type=predicted peptide gene model=Glyma04g40060 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSSEDITLVPDQRIENGLNSPLVFQDDPLRFNCPTPHQRRVGDPPPKTRELGAFIDDNKMFIDRDRFFAAAQNPEFRRYADCSARRDPPHARNWSATDDDEESDDDDEDDDDDEADDTEVGGLVGDGTKSELNNNNNNNGGANLPAVANGKAHSYVSGRELLVKDGGDIGQLVHSNVSGGDEDHRQEGLGKSQNSVTVAETDCEEYYSHYLHGGEGASGQKVMVDDSGCGFSGRKDAMYSSESGESLRAILSDPVTGALMDDAMILPCGHSFGGGGIEHAIRMKACCTCSQPTTEESISPNLSLRIAVQAYRREEESQFYRSPKRRRERFDQDRVVLEIQLLWNHQGVEVFSFHLL*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
