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Report for Sequence Feature Glyma04g39930

Feature Type:gene_model
Chromosome:Gm04
Start:46080678
stop:46084526
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma04g39930
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G10920AT Annotation by Michelle Graham. TAIR10: manganese superoxide dismutase 1 | chr3:3418015-3419581 FORWARD LENGTH=231 SoyBaseE_val: 5.00E-130ISS
GO:0006094GO-bp Annotation by Michelle Graham. GO Biological Process: gluconeogenesis SoyBaseN/AISS
GO:0006096GO-bp Annotation by Michelle Graham. GO Biological Process: glycolysis SoyBaseN/AISS
GO:0006511GO-bp Annotation by Michelle Graham. GO Biological Process: ubiquitin-dependent protein catabolic process SoyBaseN/AISS
GO:0006801GO-bp Annotation by Michelle Graham. GO Biological Process: superoxide metabolic process SoyBaseN/AISS
GO:0006833GO-bp Annotation by Michelle Graham. GO Biological Process: water transport SoyBaseN/AISS
GO:0006972GO-bp Annotation by Michelle Graham. GO Biological Process: hyperosmotic response SoyBaseN/AISS
GO:0007030GO-bp Annotation by Michelle Graham. GO Biological Process: Golgi organization SoyBaseN/AISS
GO:0009060GO-bp Annotation by Michelle Graham. GO Biological Process: aerobic respiration SoyBaseN/AISS
GO:0009266GO-bp Annotation by Michelle Graham. GO Biological Process: response to temperature stimulus SoyBaseN/AISS
GO:0009651GO-bp Annotation by Michelle Graham. GO Biological Process: response to salt stress SoyBaseN/AISS
GO:0009793GO-bp Annotation by Michelle Graham. GO Biological Process: embryo development ending in seed dormancy SoyBaseN/AISS
GO:0009853GO-bp Annotation by Michelle Graham. GO Biological Process: photorespiration SoyBaseN/AISS
GO:0010043GO-bp Annotation by Michelle Graham. GO Biological Process: response to zinc ion SoyBaseN/AISS
GO:0019430GO-bp Annotation by Michelle Graham. GO Biological Process: removal of superoxide radicals SoyBaseN/AISS
GO:0042742GO-bp Annotation by Michelle Graham. GO Biological Process: defense response to bacterium SoyBaseN/AISS
GO:0046686GO-bp Annotation by Michelle Graham. GO Biological Process: response to cadmium ion SoyBaseN/AISS
GO:0051788GO-bp Annotation by Michelle Graham. GO Biological Process: response to misfolded protein SoyBaseN/AISS
GO:0055114GO-bp Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process SoyBaseN/AISS
GO:0080129GO-bp Annotation by Michelle Graham. GO Biological Process: proteasome core complex assembly SoyBaseN/AISS
GO:0005739GO-cc Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion SoyBaseN/AISS
GO:0004784GO-mf Annotation by Michelle Graham. GO Molecular Function: superoxide dismutase activity SoyBaseN/AISS
GO:0005507GO-mf Annotation by Michelle Graham. GO Molecular Function: copper ion binding SoyBaseN/AISS
GO:0046872GO-mf Annotation by Michelle Graham. GO Molecular Function: metal ion binding SoyBaseN/AISS
KOG0876 KOG Manganese superoxide dismutase JGI ISS
PTHR11404Panther SUPEROXIDE DISMUTASE 2 JGI ISS
PTHR11404:SF5Panther SUPEROXIDE DISMUTASE JGI ISS
PF00081PFAM Iron/manganese superoxide dismutases, alpha-hairpin domain JGI ISS
PF02777PFAM Iron/manganese superoxide dismutases, C-terminal domain JGI ISS
UniRef100_I1JYA9UniRef Annotation by Michelle Graham. Most informative UniRef hit: Superoxide dismutase n=1 Tax=Glycine max RepID=I1JYA9_SOYBN SoyBaseE_val: 5.00E-175ISS
UniRef100_I1JYA9UniRef Annotation by Michelle Graham. Best UniRef hit: Superoxide dismutase n=1 Tax=Glycine max RepID=I1JYA9_SOYBN SoyBaseE_val: 5.00E-175ISS

Expression Patterns of Glyma04g39930
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma04g39930 not represented in the dataset
Glyma04g39930 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g39930
ParalogEvidenceComments
Glyma06g14960 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g39930 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.04g221300 Wm82.a2.v1IGC As supplied by JGI

References for Glyma04g39930
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Transcripts of Glyma04g39930
>Glyma04g39930.2   sequence type=transcript   gene model=Glyma04g39930   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTATAAATCCACTCAACTCGTCTCTACTTGTACTATCATCGAGTCCCTCCACTCTAGCGTTGTTGCATTGCAGAAGCGTCTCCATTTTCTTTCGCGATGGCCGCGCGAGCCCTGTTGACCAGAAAAACCCTAGCCACCGTTCTCCGCAACGACGCGAAGCCCATAATCGGAGCTGGCATAGCTGCAGCTACTCATTCTCGTGGGTTGCACGTGTACACGCTCCCCGATCTGGATTACGACTATGGCGCTCTGGAGCCAGCCATCAGCGGCGAAATCATGCAGCTGCACCACCAGAAGCACCACCAGACTTACATCACCAACTTCAACAAGGCCCTCGAGCAGCTCCAAGACGCCGTCGCCAAGAAAGATTCCTCCGCCGTCGTTAAGCTCCAGGGCGCCATCAAGTTCAACGGCGGAGGTCACGTCAACCATTCTATTTTCTGGAAAAATCTAGCTCCTGTTCGTGAAGGAGGTGGTGAACCACCCAAGGGTTCACTGGGATGGGCCATTGACACACATTTTGGCTCTTTTGAAGCATTAGTACAAAAAGTTAATGCAGAAGGTGCTGCACTACAGGGGTCTGGATGGGTGGTGAGTTGTGCAGATTCTGAGATTCCCAGCATATCTTCTATCCTTACATATCCTTAGAGCT
Coding sequences of Glyma04g39930
>Glyma04g39930.1   sequence type=CDS   gene model=Glyma04g39930   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCGCGCGAGCCCTGTTGACCAGAAAAACCCTAGCCACCGTTCTCCGCAACGACGCGAAGCCCATAATCGGAGCTGGCATAGCTGCAGCTACTCATTCTCGTGGGTTGCACGTGTACACGCTCCCCGATCTGGATTACGACTATGGCGCTCTGGAGCCAGCCATCAGCGGCGAAATCATGCAGCTGCACCACCAGAAGCACCACCAGACTTACATCACCAACTTCAACAAGGCCCTCGAGCAGCTCCAAGACGCCGTCGCCAAGAAAGATTCCTCCGCCGTCGTTAAGCTCCAGGGCGCCATCAAGTTCAACGGCGGAGGTCACGTCAACCATTCTATTTTCTGGAAAAATCTAGCTCCTGTTCGTGAAGGAGGTGGTGAACCACCCAAGGGTTCACTGGGATGGGCCATTGACACACATTTTGGCTCTTTTGAAGCATTAGTACAAAAAGTTAATGCAGAAGGTGCTGCACTACAGGGGTCTGGATGGGTGTGGCTTGGTCTGGACAAAGAGTTGAAGAGGCTTGTAGTTGAAACCACTGCCAACCAGGACCCACTGGTTACTAAGGGACCAAATTTGGTTCCATTGCTTGGTATTGATGTTTGGGAGCATGCGTACTACTTACAGTACAAGAATGTTAGACCAGACTATCTGAAGAACATTTGGAAAGTTATTAATTGGAAATATGCCAGTGAAGTGTATGAGAAAGAGAGCTCTTAG

>Glyma04g39930.2   sequence type=CDS   gene model=Glyma04g39930   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCGCGCGAGCCCTGTTGACCAGAAAAACCCTAGCCACCGTTCTCCGCAACGACGCGAAGCCCATAATCGGAGCTGGCATAGCTGCAGCTACTCATTCTCGTGGGTTGCACGTGTACACGCTCCCCGATCTGGATTACGACTATGGCGCTCTGGAGCCAGCCATCAGCGGCGAAATCATGCAGCTGCACCACCAGAAGCACCACCAGACTTACATCACCAACTTCAACAAGGCCCTCGAGCAGCTCCAAGACGCCGTCGCCAAGAAAGATTCCTCCGCCGTCGTTAAGCTCCAGGGCGCCATCAAGTTCAACGGCGGAGGTCACGTCAACCATTCTATTTTCTGGAAAAATCTAGCTCCTGTTCGTGAAGGAGGTGGTGAACCACCCAAGGGTTCACTGGGATGGGCCATTGACACACATTTTGGCTCTTTTGAAGCATTAGTACAAAAAGTTAATGCAGAAGGTGCTGCACTACAGGGGTCTGGATGGGTGGTGAGTTGTGCAGATTCTGAGATTCCCAGCATATCTTCTATCCTTACATATCCTTAG
Predicted protein sequences of Glyma04g39930
>Glyma04g39930.1   sequence type=predicted peptide   gene model=Glyma04g39930   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAARALLTRKTLATVLRNDAKPIIGAGIAAATHSRGLHVYTLPDLDYDYGALEPAISGEIMQLHHQKHHQTYITNFNKALEQLQDAVAKKDSSAVVKLQGAIKFNGGGHVNHSIFWKNLAPVREGGGEPPKGSLGWAIDTHFGSFEALVQKVNAEGAALQGSGWVWLGLDKELKRLVVETTANQDPLVTKGPNLVPLLGIDVWEHAYYLQYKNVRPDYLKNIWKVINWKYASEVYEKESS*

>Glyma04g39930.2   sequence type=predicted peptide   gene model=Glyma04g39930   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAARALLTRKTLATVLRNDAKPIIGAGIAAATHSRGLHVYTLPDLDYDYGALEPAISGEIMQLHHQKHHQTYITNFNKALEQLQDAVAKKDSSAVVKLQGAIKFNGGGHVNHSIFWKNLAPVREGGGEPPKGSLGWAIDTHFGSFEALVQKVNAEGAALQGSGWVVSCADSEIPSISSILTYP*






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