SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G40470 | AT | Annotation by Michelle Graham. TAIR10: LOB domain-containing protein 15 | chr2:16902430-16903546 REVERSE LENGTH=224 | SoyBase | E_val: 5.00E-82 | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005515 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein binding | SoyBase | N/A | ISS |
| PF03195 | PFAM | Protein of unknown function DUF260 | JGI | ISS | |
| UniRef100_B9S4B8 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: LOB domain-containing protein, putative n=1 Tax=Ricinus communis RepID=B9S4B8_RICCO | SoyBase | E_val: 1.00E-110 | ISS |
| UniRef100_UPI000233A05E | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233A05E related cluster n=1 Tax=unknown RepID=UPI000233A05E | SoyBase | E_val: 2.00E-156 | ISS |
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Glyma04g39830 not represented in the dataset |
Glyma04g39830 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma06g15050 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.04g220500 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma04g39830.2 sequence type=transcript gene model=Glyma04g39830 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high TTGTGAATGAGGCCTGCTAAGTTTCTTCATGCTTACTATAGGGAGAGATTTGATGAGATAGGGAAGAAGATCAAGAGGGAAGGAGATGTTTCATCTCAAATGGGAAGAAGACACATGTTAGGCCCTCCAGGAACCCTAAATACTATCACCCCTTGTGCGGCATGTAAGTTGTTGAGAAGAAGATGTGCCCAAGAATGTCCCTTTTCTCCATATTTCTCTCCCCATGAGCCCCAAAAATTTGCTTCTGTCCACAAAGTTTTTGGTGCCAGCAACGTCTCAAAGATGCTCATGGAAGTACCAGAGTGTCAAAGAGCTGATGCAGCAAATAGTCTAGTATATGAGGCTAATGTGAGGCTAAGAGATCCTGTGTATGGATGCATGGGTGCAATTTCTGCTTTGCAACAGCAAGTTCAATCTTTACAAGCTGAACTTAATGCAGTGAGAGGTGAAATACTTAAATACAAACTCAGGGAAGCTAACATGATACCCTCCTCTCATGTTGCAATGCTCCCTTCATCTGGGGCTGTTTCAATTGCTGCTCCACCGCCGCCACCACCACCACCACCACCTCTTCCTCCTCCTTCTCTTCCTCTTCCTCTTCCTCTAACTTCTTCCCCTCCTTCCATGTACATCCAACAAAGGGATCCCACCACTTATACCACAATTTCAAGTGATAATATCTCCTATTTTGTCTAAATTTGCAGCCTAAAAACAATTATTCCATTTATTTCTCTCTTAAGATGCATCAAGGTGGAAT
>Glyma04g39830.1 sequence type=CDS gene model=Glyma04g39830 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTCCAGAGAAAGGGAGAGATTTGATGAGATAGGGAAGAAGATCAAGAGGGAAGGAGATGTTTCATCTCAAATGGGAAGAAGACACATGTTAGGCCCTCCAGGAACCCTAAATACTATCACCCCTTGTGCGGCATGTAAGTTGTTGAGAAGAAGATGTGCCCAAGAATGTCCCTTTTCTCCATATTTCTCTCCCCATGAGCCCCAAAAATTTGCTTCTGTCCACAAAGTTTTTGGTGCCAGCAACGTCTCAAAGATGCTCATGGAAGTACCAGAGTGTCAAAGAGCTGATGCAGCAAATAGTCTAGTATATGAGGCTAATGTGAGGCTAAGAGATCCTGTGTATGGATGCATGGGTGCAATTTCTGCTTTGCAACAGCAAGTTCAATCTTTACAAGCTGAACTTAATGCAGTGAGAGGTGAAATACTTAAATACAAACTCAGGGAAGCTAACATGATACCCTCCTCTCATGTTGCAATGCTCCCTTCATCTGGGGCTGTTTCAATTGCTGCTCCACCGCCGCCACCACCACCACCACCACCTCTTCCTCCTCCTTCTCTTCCTCTTCCTCTTCCTCTAACTTCTTCCCCTCCTTCCATGTACATCCAACAAAGGGATCCCACCACTTATACCACAATTTCAAGTGATAATATCTCCTATTTTGTCTAA >Glyma04g39830.2 sequence type=CDS gene model=Glyma04g39830 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAGGCCTGCTAAGTTTCTTCATGCTTACTATAGGGAGAGATTTGATGAGATAGGGAAGAAGATCAAGAGGGAAGGAGATGTTTCATCTCAAATGGGAAGAAGACACATGTTAGGCCCTCCAGGAACCCTAAATACTATCACCCCTTGTGCGGCATGTAAGTTGTTGAGAAGAAGATGTGCCCAAGAATGTCCCTTTTCTCCATATTTCTCTCCCCATGAGCCCCAAAAATTTGCTTCTGTCCACAAAGTTTTTGGTGCCAGCAACGTCTCAAAGATGCTCATGGAAGTACCAGAGTGTCAAAGAGCTGATGCAGCAAATAGTCTAGTATATGAGGCTAATGTGAGGCTAAGAGATCCTGTGTATGGATGCATGGGTGCAATTTCTGCTTTGCAACAGCAAGTTCAATCTTTACAAGCTGAACTTAATGCAGTGAGAGGTGAAATACTTAAATACAAACTCAGGGAAGCTAACATGATACCCTCCTCTCATGTTGCAATGCTCCCTTCATCTGGGGCTGTTTCAATTGCTGCTCCACCGCCGCCACCACCACCACCACCACCTCTTCCTCCTCCTTCTCTTCCTCTTCCTCTTCCTCTAACTTCTTCCCCTCCTTCCATGTACATCCAACAAAGGGATCCCACCACTTATACCACAATTTCAAGTGATAATATCTCCTATTTTGTCTAA
>Glyma04g39830.1 sequence type=predicted peptide gene model=Glyma04g39830 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSRERERFDEIGKKIKREGDVSSQMGRRHMLGPPGTLNTITPCAACKLLRRRCAQECPFSPYFSPHEPQKFASVHKVFGASNVSKMLMEVPECQRADAANSLVYEANVRLRDPVYGCMGAISALQQQVQSLQAELNAVRGEILKYKLREANMIPSSHVAMLPSSGAVSIAAPPPPPPPPPPLPPPSLPLPLPLTSSPPSMYIQQRDPTTYTTISSDNISYFV* >Glyma04g39830.2 sequence type=predicted peptide gene model=Glyma04g39830 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MRPAKFLHAYYRERFDEIGKKIKREGDVSSQMGRRHMLGPPGTLNTITPCAACKLLRRRCAQECPFSPYFSPHEPQKFASVHKVFGASNVSKMLMEVPECQRADAANSLVYEANVRLRDPVYGCMGAISALQQQVQSLQAELNAVRGEILKYKLREANMIPSSHVAMLPSSGAVSIAAPPPPPPPPPPLPPPSLPLPLPLTSSPPSMYIQQRDPTTYTTISSDNISYFV*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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