SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G64940 | AT | Annotation by Michelle Graham. TAIR10: ABC2 homolog 13 | chr5:25949116-25953326 FORWARD LENGTH=761 | SoyBase | E_val: 0 | ISS |
| GO:0006810 | GO-bp | Annotation by Michelle Graham. GO Biological Process: transport | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0009941 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope | SoyBase | N/A | ISS |
| GO:0005215 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: transporter activity | SoyBase | N/A | ISS |
| GO:0016772 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring phosphorus-containing groups | SoyBase | N/A | ISS |
| KOG1235 | KOG | Predicted unusual protein kinase | JGI | ISS | |
| PTHR10566 | Panther | CHAPERONE-ACTIVITY OF BC1 COMPLEX (CABC1)-RELATED | JGI | ISS | |
| PTHR10566:SF10 | Panther | ABC1 - RELATED | JGI | ISS | |
| PF03109 | PFAM | ABC1 family | JGI | ISS | |
| UniRef100_G7LB96 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: ABC transporter-like protein n=1 Tax=Medicago truncatula RepID=G7LB96_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI0002339ADB | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI0002339ADB related cluster n=1 Tax=unknown RepID=UPI0002339ADB | SoyBase | E_val: 0 | ISS |
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Glyma04g39801 not represented in the dataset |
Glyma04g39801 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma06g15070 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.04g220200 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma04g39801.2 sequence type=transcript gene model=Glyma04g39801 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATTTTTATGGCTCATTTTCGCTAAAGCCACGTGTTCTGTTCATCTCCACTCCTTTCCCTCCTTGTCTTCTTCTTCTACTCTCAACGCCATGAAAATCACACTCACACTGTGATCCTTAACCTCTCTCACTCTCTTCTAACTTCCGATTCATGGCAGCGTCTTCTCCTCTCCCTTTACCCGAACTCCATTTCCTTTCTCCGCAAATCACCCCCAAACGCCGTATTTCCCTCTCCAAACTCCCCTCCATTTCCCGCCACGTCACCTCCAACGTTTCTCTCCGCACCGCGCGAATCCGCGCAAGCAGAGAAGAATCCGCGTTGGCCGACCGAGTCAACGACGTCGAATGGACCGGAAATGGCGCCGCCGCCGCTGCTTCCAACGCCAATGGTGCCTCCGTTAGTGGATACGTCAACGGCGCCACTAACGGAAGCTTGGTCAAGTACGGTTACGAAGACGGAAACGACGTTGCTGCTGCGGAGGTGGTGGAAGTTGAAGCCTCTAACAAGCTGAGCGAGGATGGGAGGAAGAAGAGGTTGGAGGAGATTGGGAAAGAAGACGCGTGGTTCAAACAAACCGGGAACGAACAAGTTGAGGGTCGTCGTTTTGATTGAGTTTAAGTAGGTTCTACTACTTGGAACTTGGAATGAAGTATGAACGTGTGGTTTTTCGCAGGTGGCAGTTGCACCTGGGGGTCGTTGGAACAGGTTCAAGACTTACTCCACAATACAAAGAACCTTTGAGATTTGGGGATTTGTTGCCACGTTCATCTTTAAGGCTTGGCTGAACAACCAGAAGTTCTCTTACAAAGGAGGAATGACCGAGGAAAAAAAAACCTTAAGGCGAAAGGCCCTTGCCAAGTGGCTGAAGGAAAACATTCTGAGATTAGGTCCTACATTCATCAAAATTGGCCAGCAGTTCTCCACTAGAGTGGACATTCTTCCTCAAGAATATGTTGACCAGTTGTCCGAACTTCAGGATCAAGTTCCTCCATTTCCCTCAGAGACCTCTGTAGCTATTGTTGAAGAAGAGCTGGGAGCTCCTTTAGGTGATATCTTTGATCAGTTTGACTATGAACCAATAGCTGCTGCAAGTCTTGGTCAGGTTCATCGTGCGACATTAAAGGGACAGGAGGTTGTTGTTAAAGTACAAAGGCCTGGTCTCAAGGATCTTTTTGATATTGATCTTAAAAACCTGAGGGTTATTGCTGAATATCTTCAAAAAATTGATCCAAAATCAGATGGTGCAAAGAGGGATTGGGTTGCTATTTATGATGAATGTGCCTCTGTCTTATATCAGGAGATTGATTACACCAAGGAGGCTGCTAATGCTGAATTGTTTGCAAGTAACTTTAAGAACATGGATTATGTGAAAGTTCCTACAATCTACTGGGATTATACCACTCCACAGATTCTGACAATGGAGTATGTTCCTGGGATTAAAATAAACAAAATACAAGCTTTAGACCAACTGGGTGTTGACCGCAAAAGGTTAGGGAGATATGCGGTTGAGTCATACTTGGAACAAATTTTATCACATGGTTTCTTCCATGCTGACCCTCATCCTGGAAATATTGCAGTTGATGATGTCAATGGTGGAAGATTGATCTTCTATGATTTTGGAATGATGGGGAGTATCAGTCCAAACATTCGAGAAGGTTTGCTCGAAACATTTTATGGGGTTTATGAGAAAGATCCAGACAAGGTTCTACAAGCAATGATTCAAATGGGAGTTCTTGTCCCCACTGGAGATATGACTGCTGTTAGAAGAACAGCACAATTCTTCCTCAACAGTTTTGAAGAGCGCCTGGCTGCACAAAGGAGAGAGAGAGAGGAAGCAACAACTGAACTTGGATTCAAAAAACCATTAAGCAAGGAGGAAAAAATAAAGAAGAAAAAACAACGTCTGGCTGCTATTGGTGAAGATTTATTATCTATTGCAGCAGACCAGCCCTTCCGATTTCCTGCTACATTCACATTTGTTGTTAGAGCCTTCTCAGTGTTGGATGGCATTGGAAAGGGGCTTGACCCACGTTTTGACATCACTGAGATTGCCAAACCTTATGCCCTGGAGTTGCTCAGGTTTCGTGAAGCTGGGGTTGAAGTTGTCCTAAAGGACTTCAGGAAGAGATGGGATAGACAATCTCAAGCATTTTACAACTTAATCAGACAGGCTGATAGGGTTGACAAGCTTGCTAACATTATCCAAAGACTGGAGCAAGGTGATCTAAAGCTGCGAGTTCGAACTTTGGAATCTGAGAGGGCATTCCAACGTGTTGCTGCAGTCCAGAAGACTATAGGGAATGCAGTAGCTGCTGGGAGCCTAATCAATCTTGCAACAGTTTTGTATCTCAACTCAATTCGTGTGCCTGCCATTGCAGCATATATCTTCTGTGCAATCTTTGGTTTTCAAGTGCTCTTGGGCATTGTAAAGGTCAAGAAGCTAGATGAACGGGAACGATTGATAACAGGGATTGCATGAGCAGCTACATGATTTAGGACCGAGAAATAGCACATGTTACGGTCATGGTTGCAAGTCAACCTTCAGAAAAGGATTAAATGACCTGGGGAGCTGATAGAAAGCATTACCCAACATTTCGAAAGACTTCAGCAAGTACAAAAATTTCAAGCAGCAAATGATGGGGGCTTTCTCCATTCACCTGTTTCTGTTAATAAAAAAAATGTGCTCTACGATAGCCAAATTGGCTTAGAGCCACATTTTTGTCATACACCCCACCTCTCCCAAAAAATTATAAATATAAGTTATTGCCGCATAGTAACTTGTATAGGTATGATATAGAGTTTTCATATATTCACAATTCACAATTACATTCCACGCCCGAATTGGACCAAAATCTGTCAAAATTCAGCTACTAGTATTTTTCTATGTAGCATGACCCTTATTGTAATTACCATACGGTATAATGCAGCTTCCGACAAAAATTTGGAGGGAAGCTCTGCCCCAAATTGACTAACATAAATGAAAAAATGTCTGCTTGTGTCATCGATGTGCGTGTTGGATTTACATTGCAGATCAAACGACAGGTTTTTCTAGATGGTTATGCAAGTAATCTGCGAGTTTCATATCCTGAACACCTTACTGCATTGGCATCATTGTTCGCAGGGTCTATTGAATTCACGATGTCTGTTTCACCGCCTCTAATGTCTTT
>Glyma04g39801.1 sequence type=CDS gene model=Glyma04g39801 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCAGCGTCTTCTCCTCTCCCTTTACCCGAACTCCATTTCCTTTCTCCGCAAATCACCCCCAAACGCCGTATTTCCCTCTCCAAACTCCCCTCCATTTCCCGCCACGTCACCTCCAACGTTTCTCTCCGCACCGCGCGAATCCGCGCAAGCAGAGAAGAATCCGCGTTGGCCGACCGAGTCAACGACGTCGAATGGACCGGAAATGGCGCCGCCGCCGCTGCTTCCAACGCCAATGGTGCCTCCGTTAGTGGATACGTCAACGGCGCCACTAACGGAAGCTTGGTCAAGTACGGTTACGAAGACGGAAACGACGTTGCTGCTGCGGAGGTGGTGGAAGTTGAAGCCTCTAACAAGCTGAGCGAGGATGGGAGGAAGAAGAGGTTGGAGGAGATTGGGAAAGAAGACGCGTGGTTCAAACAAACCGGGAACGAACAAGTGGCAGTTGCACCTGGGGGTCGTTGGAACAGGTTCAAGACTTACTCCACAATACAAAGAACCTTTGAGATTTGGGGATTTGTTGCCACGTTCATCTTTAAGGCTTGGCTGAACAACCAGAAGTTCTCTTACAAAGGAGGAATGACCGAGGAAAAAAAAACCTTAAGGCGAAAGGCCCTTGCCAAGTGGCTGAAGGAAAACATTCTGAGATTAGGTCCTACATTCATCAAAATTGGCCAGCAGTTCTCCACTAGAGTGGACATTCTTCCTCAAGAATATGTTGACCAGTTGTCCGAACTTCAGGATCAAGTTCCTCCATTTCCCTCAGAGACCTCTGTAGCTATTGTTGAAGAAGAGCTGGGAGCTCCTTTAGGTGATATCTTTGATCAGTTTGACTATGAACCAATAGCTGCTGCAAGTCTTGGTCAGGTTCATCGTGCGACATTAAAGGGACAGGAGGTTGTTGTTAAAGTACAAAGGCCTGGTCTCAAGGATCTTTTTGATATTGATCTTAAAAACCTGAGGGTTATTGCTGAATATCTTCAAAAAATTGATCCAAAATCAGATGGTGCAAAGAGGGATTGGGTTGCTATTTATGATGAATGTGCCTCTGTCTTATATCAGGAGATTGATTACACCAAGGAGGCTGCTAATGCTGAATTGTTTGCAAGTAACTTTAAGAACATGGATTATGTGAAAGTTCCTACAATCTACTGGGATTATACCACTCCACAGATTCTGACAATGGAGTATGTTCCTGGGATTAAAATAAACAAAATACAAGCTTTAGACCAACTGGGTGTTGACCGCAAAAGGTTAGGGAGATATGCGGTTGAGTCATACTTGGAACAAATTTTATCACATGGTTTCTTCCATGCTGACCCTCATCCTGGAAATATTGCAGTTGATGATGTCAATGGTGGAAGATTGATCTTCTATGATTTTGGAATGATGGGGAGTATCAGTCCAAACATTCGAGAAGGTTTGCTCGAAACATTTTATGGGGTTTATGAGAAAGATCCAGACAAGGTTCTACAAGCAATGATTCAAATGGGAGTTCTTGTCCCCACTGGAGATATGACTGCTGTTAGAAGAACAGCACAATTCTTCCTCAACAGTTTTGAAGAGCGCCTGGCTGCACAAAGGAGAGAGAGAGAGGAAGCAACAACTGAACTTGGATTCAAAAAACCATTAAGCAAGGAGGAAAAAATAAAGAAGAAAAAACAACGTCTGGCTGCTATTGGTGAAGATTTATTATCTATTGCAGCAGACCAGCCCTTCCGATTTCCTGCTACATTCACATTTGTTGTTAGAGCCTTCTCAGTGTTGGATGGCATTGGAAAGGGGCTTGACCCACGTTTTGACATCACTGAGATTGCCAAACCTTATGCCCTGGAGTTGCTCAGGTTTCGTGAAGCTGGGGTTGAAGTTGTCCTAAAGGACTTCAGGAAGAGATGGGATAGACAATCTCAAGCATTTTACAACTTAATCAGACAGGCTGATAGGGTTGACAAGCTTGCTAACATTATCCAAAGACTGGAGCAAGGTGATCTAAAGCTGCGAGTTCGAACTTTGGAATCTGAGAGGGCATTCCAACGTGTTGCTGCAGTCCAGAAGACTATAGGGAATGCAGTAGCTGCTGGGAGCCTAATCAATCTTGCAACAGTTTTGTATCTCAACTCAATTCGTGTGCCTGCCATTGCAGCATATATCTTCTGTGCAATCTTTGGTTTTCAAGTGCTCTTGGGCATTGTAAAGGTCAAGAAGCTAGATGAACGGGAACGATTGATAACAGGGATTGCATGA >Glyma04g39801.2 sequence type=CDS gene model=Glyma04g39801 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGACCGAGGAAAAAAAAACCTTAAGGCGAAAGGCCCTTGCCAAGTGGCTGAAGGAAAACATTCTGAGATTAGGTCCTACATTCATCAAAATTGGCCAGCAGTTCTCCACTAGAGTGGACATTCTTCCTCAAGAATATGTTGACCAGTTGTCCGAACTTCAGGATCAAGTTCCTCCATTTCCCTCAGAGACCTCTGTAGCTATTGTTGAAGAAGAGCTGGGAGCTCCTTTAGGTGATATCTTTGATCAGTTTGACTATGAACCAATAGCTGCTGCAAGTCTTGGTCAGGTTCATCGTGCGACATTAAAGGGACAGGAGGTTGTTGTTAAAGTACAAAGGCCTGGTCTCAAGGATCTTTTTGATATTGATCTTAAAAACCTGAGGGTTATTGCTGAATATCTTCAAAAAATTGATCCAAAATCAGATGGTGCAAAGAGGGATTGGGTTGCTATTTATGATGAATGTGCCTCTGTCTTATATCAGGAGATTGATTACACCAAGGAGGCTGCTAATGCTGAATTGTTTGCAAGTAACTTTAAGAACATGGATTATGTGAAAGTTCCTACAATCTACTGGGATTATACCACTCCACAGATTCTGACAATGGAGTATGTTCCTGGGATTAAAATAAACAAAATACAAGCTTTAGACCAACTGGGTGTTGACCGCAAAAGGTTAGGGAGATATGCGGTTGAGTCATACTTGGAACAAATTTTATCACATGGTTTCTTCCATGCTGACCCTCATCCTGGAAATATTGCAGTTGATGATGTCAATGGTGGAAGATTGATCTTCTATGATTTTGGAATGATGGGGAGTATCAGTCCAAACATTCGAGAAGGTTTGCTCGAAACATTTTATGGGGTTTATGAGAAAGATCCAGACAAGGTTCTACAAGCAATGATTCAAATGGGAGTTCTTGTCCCCACTGGAGATATGACTGCTGTTAGAAGAACAGCACAATTCTTCCTCAACAGTTTTGAAGAGCGCCTGGCTGCACAAAGGAGAGAGAGAGAGGAAGCAACAACTGAACTTGGATTCAAAAAACCATTAAGCAAGGAGGAAAAAATAAAGAAGAAAAAACAACGTCTGGCTGCTATTGGTGAAGATTTATTATCTATTGCAGCAGACCAGCCCTTCCGATTTCCTGCTACATTCACATTTGTTGTTAGAGCCTTCTCAGTGTTGGATGGCATTGGAAAGGGGCTTGACCCACGTTTTGACATCACTGAGATTGCCAAACCTTATGCCCTGGAGTTGCTCAGGTTTCGTGAAGCTGGGGTTGAAGTTGTCCTAAAGGACTTCAGGAAGAGATGGGATAGACAATCTCAAGCATTTTACAACTTAATCAGACAGGCTGATAGGGTTGACAAGCTTGCTAACATTATCCAAAGACTGGAGCAAGGTGATCTAAAGCTGCGAGTTCGAACTTTGGAATCTGAGAGGGCATTCCAACGTGTTGCTGCAGTCCAGAAGACTATAGGGAATGCAGTAGCTGCTGGGAGCCTAATCAATCTTGCAACAGTTTTGTATCTCAACTCAATTCGTGTGCCTGCCATTGCAGCATATATCTTCTGTGCAATCTTTGGTTTTCAAGTGCTCTTGGGCATTGTAAAGGTCAAGAAGCTAGATGAACGGGAACGATTGATAACAGGGATTGCATGA
>Glyma04g39801.1 sequence type=predicted peptide gene model=Glyma04g39801 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAASSPLPLPELHFLSPQITPKRRISLSKLPSISRHVTSNVSLRTARIRASREESALADRVNDVEWTGNGAAAAASNANGASVSGYVNGATNGSLVKYGYEDGNDVAAAEVVEVEASNKLSEDGRKKRLEEIGKEDAWFKQTGNEQVAVAPGGRWNRFKTYSTIQRTFEIWGFVATFIFKAWLNNQKFSYKGGMTEEKKTLRRKALAKWLKENILRLGPTFIKIGQQFSTRVDILPQEYVDQLSELQDQVPPFPSETSVAIVEEELGAPLGDIFDQFDYEPIAAASLGQVHRATLKGQEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDYTKEAANAELFASNFKNMDYVKVPTIYWDYTTPQILTMEYVPGIKINKIQALDQLGVDRKRLGRYAVESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLETFYGVYEKDPDKVLQAMIQMGVLVPTGDMTAVRRTAQFFLNSFEERLAAQRREREEATTELGFKKPLSKEEKIKKKKQRLAAIGEDLLSIAADQPFRFPATFTFVVRAFSVLDGIGKGLDPRFDITEIAKPYALELLRFREAGVEVVLKDFRKRWDRQSQAFYNLIRQADRVDKLANIIQRLEQGDLKLRVRTLESERAFQRVAAVQKTIGNAVAAGSLINLATVLYLNSIRVPAIAAYIFCAIFGFQVLLGIVKVKKLDERERLITGIA* >Glyma04g39801.2 sequence type=predicted peptide gene model=Glyma04g39801 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MTEEKKTLRRKALAKWLKENILRLGPTFIKIGQQFSTRVDILPQEYVDQLSELQDQVPPFPSETSVAIVEEELGAPLGDIFDQFDYEPIAAASLGQVHRATLKGQEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDYTKEAANAELFASNFKNMDYVKVPTIYWDYTTPQILTMEYVPGIKINKIQALDQLGVDRKRLGRYAVESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLETFYGVYEKDPDKVLQAMIQMGVLVPTGDMTAVRRTAQFFLNSFEERLAAQRREREEATTELGFKKPLSKEEKIKKKKQRLAAIGEDLLSIAADQPFRFPATFTFVVRAFSVLDGIGKGLDPRFDITEIAKPYALELLRFREAGVEVVLKDFRKRWDRQSQAFYNLIRQADRVDKLANIIQRLEQGDLKLRVRTLESERAFQRVAAVQKTIGNAVAAGSLINLATVLYLNSIRVPAIAAYIFCAIFGFQVLLGIVKVKKLDERERLITGIA*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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