SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G39520 | AT | Annotation by Michelle Graham. TAIR10: GTP-binding protein-related | chr4:18371329-18374000 REVERSE LENGTH=369 | SoyBase | E_val: 0 | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0005829 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosol | SoyBase | N/A | ISS |
| GO:0003924 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: GTPase activity | SoyBase | N/A | ISS |
| GO:0005525 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: GTP binding | SoyBase | N/A | ISS |
| GO:0019003 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: GDP binding | SoyBase | N/A | ISS |
| KOG1487 | KOG | GTP-binding protein DRG1 (ODN superfamily) | JGI | ISS | |
| PTHR11702 | Panther | DEVELOPMENTALLY REGULATED GTP-BINDING PROTEIN-RELATED | JGI | ISS | |
| PTHR11702:SF8 | Panther | gb def: conserved gtp binding protein [schizosaccharomyces pombe] | JGI | ISS | |
| PF01926 | PFAM | GTPase of unknown function | JGI | ISS | |
| PF02824 | PFAM | TGS domain | JGI | ISS | |
| UniRef100_G7JAA5 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Developmentally regulated GTP binding protein n=1 Tax=Medicago truncatula RepID=G7JAA5_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1JY81 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JY81_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma04g39690 not represented in the dataset |
Glyma04g39690 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma06g15180 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.04g219100 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma04g39690.1 sequence type=CDS gene model=Glyma04g39690 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCGACGGTGATGCAGAAGATCAAAGATATCGAAGATGAGATGGCAAAGACCCAAAAAAACAAGGCTACTGCTCATCATCTGGGCTTGCTGAAGGCTAAATTAGCAAAGTTGCGGAGGGAACTCCTTACACCTTCATCAAAAGGAGCTGGAGGTGCTGGTGAAGGTTTTGATGTTACTAAAAGTGGGGATTCAAGAGTTGGTCTTGTGGGCTTCCCTTCAGTTGGCAAATCTACTCTACTAAATAAGTTGACCGGGACATTTTCTGAGGTTGCTTCCTATGAGTTTACTACCTTAACTTGCATCCCAGGTGTGATCACATATCGTGGAGCTAAAATCCAGTTGTTGGATCTCCCTGGAATTATCGAGGGTGCTAAGGATGGAAAGGGTAGAGGAAGGCAGGTTATTAGTACTGCAAGAACATGCAATTGCATTTTGATTGTCCTTGATGCAATTAAGCCAATAACTCATAAGCGTCTTATCGAAAAAGAGCTAGAGGGATTTGGTATAAGGTTAAACAAAGAGCCACCAAATCTGACTTTTAGGAAGAAAGACAAAGGTGGACTCAATCTCACCTCAACTGTCACCACAACACATCTAGATCTTGAGACTGTGAAGGCTATATGTAGTGAGTACAGAATTCACAATGCAGATATTACTCTCAGGTATGATGCCACTGCTGATGACCTTATAGATGTCATTGAGGGAAGTAGGGTGTATATACCTTGTATCTATGTTGTGAACAAGATTGATCAGATCACACTTGAGGAACTGGAGATCTTGGATAAGCTACCTCATTACTGCCCAATCAGTGCACATCTGGAGTGGAACCTTGATGGTCTTCTGGAGAAAATTTGGGAATATCTCAACTTAACTCGTATTTATACTAAACCTAAAGGGATGAATCCTGATTATGAAGACCCTGTAATATTATCCTCTAAGAAGAGGACAGTTGAGGACTTCTGCGATCGCATTCACAAGGACATGCTTAAACAGTTTAAGTATGCTTTGGTCTGGGGTTCAAGTGCAAAACACAAGCCTCAAAGAGTTGGCAAGGAGCATGAACTTGAAGATGAAGACGTTGTTCAGATTATCAAGAAAGTATAA
>Glyma04g39690.1 sequence type=predicted peptide gene model=Glyma04g39690 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MATVMQKIKDIEDEMAKTQKNKATAHHLGLLKAKLAKLRRELLTPSSKGAGGAGEGFDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGRQVISTARTCNCILIVLDAIKPITHKRLIEKELEGFGIRLNKEPPNLTFRKKDKGGLNLTSTVTTTHLDLETVKAICSEYRIHNADITLRYDATADDLIDVIEGSRVYIPCIYVVNKIDQITLEELEILDKLPHYCPISAHLEWNLDGLLEKIWEYLNLTRIYTKPKGMNPDYEDPVILSSKKRTVEDFCDRIHKDMLKQFKYALVWGSSAKHKPQRVGKEHELEDEDVVQIIKKV*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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