Glyma04g39621 - SoyBase

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Report for Sequence Feature Glyma04g39621

Feature Type:	gene_model
Chromosome:	Gm04
Start:	45815335
stop:	45818630
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g39621

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G39410	AT	Annotation by Michelle Graham. TAIR10: WRKY DNA-binding protein 13 \| chr4:18332937-18334789 REVERSE LENGTH=304	SoyBase	E_val: 2.00E-61	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
GO:0043565	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding	SoyBase	N/A	ISS
PF03106	PFAM	WRKY DNA -binding domain	JGI		ISS
UniRef100_I1KBD0	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1KBD0_SOYBN	SoyBase	E_val: 7.00E-137	ISS
UniRef100_Q2PJS2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: WRKY40 n=1 Tax=Glycine max RepID=Q2PJS2_SOYBN	SoyBase	E_val: 1.00E-120	ISS

Proteins Associated with Glyma04g39621

Locus	Gene Symbol	Protein Name
	WRKY45	WRKY Transcription Factor

Expression Patterns of Glyma04g39621

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma04g39621 not represented in the dataset	Glyma04g39621 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g39621

Paralog	Evidence	Comments
Glyma06g15260	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g39621 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g218400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g39621

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma04g39621

Limit To All Plant Sequences

>Glyma04g39621.2   sequence type=transcript   gene model=Glyma04g39621   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AGGGAAAGTTGGTTGAACTACGTCGTTATAAGACATACTTCCAGATCATGGTGTAACCTCGTCGCCAAAGTTCGAGAGAAACCCTCTTTCGTTTCGGTAAAGGGAACTAACCACTTTTGTCTTGTTATTGTTACAATGATCTTCTCTTAGTTTAAGTAAGGGAGATAGATAGCTAGAGAGTGTGTTGGATCGATCTCAAAGGGTAGAGAAGATAATCAAGAAATGATGTCAACAACATCCCAAACTAATGTTAACCATAGCTTGTTTGAAGAGCAAGATCAGATCCCTACGCAGATGGGGTTGTTCAATATTCCTTTCCCACCAAACCAAACATACCCTCCTTTGGGTTGCCAAACAGGCACTTTGAAATCCATCAGTGCAATAGCTCCTTCACTTTCATCTGCTACAAGTTTTTCTGAAACCCTACTTTCAACCGCAGTTCAAAGACCACGAGAAGATCTCACTTCAAATTTGCTAGCTGGAGGAGGAGGCCAACTCCTTTCCTTGAACAGATCCAGAGTGAATTCATGGGCATGGGAAGAAGTAAGCGATTGTTTGATGGGTAAAAGAATTGGAGGAGATGATAATCATCATCTAGGGGTTTCTGCCATGAAGATGAAGAAAATGAAAGCAAGGAGAAAGGTGAGGGAGCCAAGGTTTTGCTTCAAGACTATGAGCGATGTAGATGTGTTGGATGATGGCTACAAGTGGAGGAAGTACGGACAGAAAGTGGTAAAGAACACACAACACCCGAGAAATTATAAACTTCTTTTTCGCTGGAAGGACTGACCAGATAGACCCAAAAGGCTTGGTTGGAGACAGGTTAACGAAGCTACTACCGTTGCACACAAGATAACTGTCGAGTAAAGAAACGCGTGGAGCGCTTGGCAGAGGATCCAAGGATGGTGATAACCACATATGAAGGGAGACACGTGCACTCGCCATCAAATGAACTTGAAGACTCGCAAACCCCTTCTGAACTTAGTAATTTCTTGTGGTAGTTTACACCAACATAATGTTTACATATATGTATATTTTAATCGTAGAGAGTAGAGATCGATGAAGACCGAATAAGTAGAGAGGAATGAGTAAAAATTGACAGTGTATCTTGGAAATGATGCATGCATGCTTTGTTTGGTTCATTGTCAATTTTCACTCGTTTCCATCCATTCCTCCCATTTTCACCCTTTCCAAGAGCACAATAAATATACATATACAGTTGTGCTTTTTTTTCTTCTTTTTGTTAGTTTTACAAGCATAATTAATATTTCTAAGTTGCAAA

Coding sequences of Glyma04g39621

Limit To All Plant Sequences

>Glyma04g39621.1   sequence type=CDS   gene model=Glyma04g39621   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATGTCAACAACATCCCAAACTAATGTTAACCATAGCTTGTTTGAAGAGCAAGATCAGATCCCTACGCAGATGGGGTTGTTCAATATTCCTTTCCCACCAAACCAAACATACCCTCCTTTGGGTTGCCAAACAGGCACTTTGAAATCCATCAGTGCAATAGCTCCTTCACTTTCATCTGCTACAAGTTTTTCTGAAACCCTACTTTCAACCGCAGTTCAAAGACCACGAGAAGATCTCACTTCAAATTTGCTAGCTGGAGGAGGAGGCCAACTCCTTTCCTTGAACAGATCCAGAGTGAATTCATGGGCATGGGAAGAAGTAAGCGATTGTTTGATGGGTAAAAGAATTGGAGGAGATGATAATCATCATCTAGGGGTTTCTGCCATGAAGATGAAGAAAATGAAAGCAAGGAGAAAGGTGAGGGAGCCAAGGTTTTGCTTCAAGACTATGAGCGATGTAGATGTGTTGGATGATGGCTACAAGTGGAGGAAGTACGGACAGAAAGTGGTAAAGAACACACAACACCCGAGAAGCTACTACCGTTGCACACAAGATAACTGTCGAGTAAAGAAACGCGTGGAGCGCTTGGCAGAGGATCCAAGGATGGTGATAACCACATATGAAGGGAGACACGTGCACTCGCCATCAAATGAACTTGAAGACTCGCAAACCCCTTCTGAACTTAGTAATTTCTTGTGGTAG

>Glyma04g39621.2   sequence type=CDS   gene model=Glyma04g39621   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATGTCAACAACATCCCAAACTAATGTTAACCATAGCTTGTTTGAAGAGCAAGATCAGATCCCTACGCAGATGGGGTTGTTCAATATTCCTTTCCCACCAAACCAAACATACCCTCCTTTGGGTTGCCAAACAGGCACTTTGAAATCCATCAGTGCAATAGCTCCTTCACTTTCATCTGCTACAAGTTTTTCTGAAACCCTACTTTCAACCGCAGTTCAAAGACCACGAGAAGATCTCACTTCAAATTTGCTAGCTGGAGGAGGAGGCCAACTCCTTTCCTTGAACAGATCCAGAGTGAATTCATGGGCATGGGAAGAAGTAAGCGATTGTTTGATGGGTAAAAGAATTGGAGGAGATGATAATCATCATCTAGGGGTTTCTGCCATGAAGATGAAGAAAATGAAAGCAAGGAGAAAGGTGAGGGAGCCAAGGTTTTGCTTCAAGACTATGAGCGATGTAGATGTGTTGGATGATGGCTACAAGTGGAGGAAGTACGGACAGAAAGTGGTAAAGAACACACAACACCCGAGAAATTATAAACTTCTTTTTCGCTGGAAGGACTGA

Predicted protein sequences of Glyma04g39621

Limit To All Plant Sequences

>Glyma04g39621.1   sequence type=predicted peptide   gene model=Glyma04g39621   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MMSTTSQTNVNHSLFEEQDQIPTQMGLFNIPFPPNQTYPPLGCQTGTLKSISAIAPSLSSATSFSETLLSTAVQRPREDLTSNLLAGGGGQLLSLNRSRVNSWAWEEVSDCLMGKRIGGDDNHHLGVSAMKMKKMKARRKVREPRFCFKTMSDVDVLDDGYKWRKYGQKVVKNTQHPRSYYRCTQDNCRVKKRVERLAEDPRMVITTYEGRHVHSPSNELEDSQTPSELSNFLW*

>Glyma04g39621.2   sequence type=predicted peptide   gene model=Glyma04g39621   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MMSTTSQTNVNHSLFEEQDQIPTQMGLFNIPFPPNQTYPPLGCQTGTLKSISAIAPSLSSATSFSETLLSTAVQRPREDLTSNLLAGGGGQLLSLNRSRVNSWAWEEVSDCLMGKRIGGDDNHHLGVSAMKMKKMKARRKVREPRFCFKTMSDVDVLDDGYKWRKYGQKVVKNTQHPRNYKLLFRWKD*

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