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Report for Sequence Feature Glyma04g39610

Feature Type:gene_model
Chromosome:Gm04
Start:45797339
stop:45801559
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma04g39610
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G39400AT Annotation by Michelle Graham. TAIR10: Leucine-rich receptor-like protein kinase family protein | chr4:18324826-18328416 FORWARD LENGTH=1196 SoyBaseE_val: 0ISS
GO:0000271GO-bp Annotation by Michelle Graham. GO Biological Process: polysaccharide biosynthetic process SoyBaseN/AISS
GO:0002237GO-bp Annotation by Michelle Graham. GO Biological Process: response to molecule of bacterial origin SoyBaseN/AISS
GO:0007165GO-bp Annotation by Michelle Graham. GO Biological Process: signal transduction SoyBaseN/AISS
GO:0009729GO-bp Annotation by Michelle Graham. GO Biological Process: detection of brassinosteroid stimulus SoyBaseN/AISS
GO:0009742GO-bp Annotation by Michelle Graham. GO Biological Process: brassinosteroid mediated signaling pathway SoyBaseN/AISS
GO:0009825GO-bp Annotation by Michelle Graham. GO Biological Process: multidimensional cell growth SoyBaseN/AISS
GO:0009826GO-bp Annotation by Michelle Graham. GO Biological Process: unidimensional cell growth SoyBaseN/AISS
GO:0009911GO-bp Annotation by Michelle Graham. GO Biological Process: positive regulation of flower development SoyBaseN/AISS
GO:0009932GO-bp Annotation by Michelle Graham. GO Biological Process: cell tip growth SoyBaseN/AISS
GO:0010103GO-bp Annotation by Michelle Graham. GO Biological Process: stomatal complex morphogenesis SoyBaseN/AISS
GO:0010224GO-bp Annotation by Michelle Graham. GO Biological Process: response to UV-B SoyBaseN/AISS
GO:0010268GO-bp Annotation by Michelle Graham. GO Biological Process: brassinosteroid homeostasis SoyBaseN/AISS
GO:0010584GO-bp Annotation by Michelle Graham. GO Biological Process: pollen exine formation SoyBaseN/AISS
GO:0010817GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of hormone levels SoyBaseN/AISS
GO:0016310GO-bp Annotation by Michelle Graham. GO Biological Process: phosphorylation SoyBaseN/AISS
GO:0042742GO-bp Annotation by Michelle Graham. GO Biological Process: defense response to bacterium SoyBaseN/AISS
GO:0043481GO-bp Annotation by Michelle Graham. GO Biological Process: anthocyanin accumulation in tissues in response to UV light SoyBaseN/AISS
GO:0048366GO-bp Annotation by Michelle Graham. GO Biological Process: leaf development SoyBaseN/AISS
GO:0048443GO-bp Annotation by Michelle Graham. GO Biological Process: stamen development SoyBaseN/AISS
GO:0048657GO-bp Annotation by Michelle Graham. GO Biological Process: tapetal cell differentiation SoyBaseN/AISS
GO:0048767GO-bp Annotation by Michelle Graham. GO Biological Process: root hair elongation SoyBaseN/AISS
GO:0060548GO-bp Annotation by Michelle Graham. GO Biological Process: negative regulation of cell death SoyBaseN/AISS
GO:0071555GO-bp Annotation by Michelle Graham. GO Biological Process: cell wall organization SoyBaseN/AISS
GO:1900140GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of seedling development SoyBaseN/AISS
GO:0005768GO-cc Annotation by Michelle Graham. GO Cellular Compartment: endosome SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0004672GO-mf Annotation by Michelle Graham. GO Molecular Function: protein kinase activity SoyBaseN/AISS
GO:0004674GO-mf Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine kinase activity SoyBaseN/AISS
GO:0005496GO-mf Annotation by Michelle Graham. GO Molecular Function: steroid binding SoyBaseN/AISS
GO:0005515GO-mf Annotation by Michelle Graham. GO Molecular Function: protein binding SoyBaseN/AISS
GO:0016301GO-mf Annotation by Michelle Graham. GO Molecular Function: kinase activity SoyBaseN/AISS
GO:0042802GO-mf Annotation by Michelle Graham. GO Molecular Function: identical protein binding SoyBaseN/AISS
GO:0042803GO-mf Annotation by Michelle Graham. GO Molecular Function: protein homodimerization activity SoyBaseN/AISS
GO:0046982GO-mf Annotation by Michelle Graham. GO Molecular Function: protein heterodimerization activity SoyBaseN/AISS
KOG1187 KOG Serine/threonine protein kinase JGI ISS
PTHR24420Panther FAMILY NOT NAMED JGI ISS
PTHR24420:SF122Panther SUBFAMILY NOT NAMED JGI ISS
PF00069PFAM Protein kinase domain JGI ISS
PF00560PFAM Leucine Rich Repeat JGI ISS
PF08263PFAM Leucine rich repeat N-terminal domain JGI ISS
UniRef100_C6FF79UniRef Annotation by Michelle Graham. Best UniRef hit: Brassinosteroid receptor n=2 Tax=Glycine max RepID=C6FF79_SOYBN SoyBaseE_val: 0ISS
UniRef100_C6FF79UniRef Annotation by Michelle Graham. Most informative UniRef hit: Brassinosteroid receptor n=2 Tax=Glycine max RepID=C6FF79_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma04g39610
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g39610
ParalogEvidenceComments
Glyma06g15270 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g39610 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.04g218300 Wm82.a2.v1IGC As supplied by JGI

References for Glyma04g39610
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma04g39610
>Glyma04g39610.2   sequence type=CDS   gene model=Glyma04g39610   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAAGCTCTGTACAGAAGCTCTCTCTTGCTCTTGCTCTTGCTCTTCATCTCCGTGTGTTTTGCATCTTCTTCTTCTCCGGTCACTCAGCAACTCCTAAGCTTCAAAAACTCTCTCCCGAACCCATCCCTGCTCCCCAACTGGCTCCCTAACCAAAGCCCGTGCACATTCAGCGGCATCAGCTGCAACGACACAGAGCTCACATCCATAGACCTCAGCTCCGTCCCTCTCAGCACTAACCTAACCGTCATCGCCAGCTTCCTCCTTAGCCTGGACCACCTCCAGTCACTCTCCTTAAAATCCACCAACCTCTCCGGTCCCGCCGCCATGCCTCCTCTCTCCCACTCCCAGTGCTCCTCCTCATTAACCTCCCTAGATCTCTCCCAAAACTCCCTCTCTGCCTCCCTCAACGACATGTCGTTTCTCGCCTCCTGCTCCAACCTCCAATCCCTCAACCTCTCCTCCAACCTCCTCCAATTCGGCCCCCCGCCCCACTGGAAGCTCCACCACCTCCGCTTCGCCGACTTCTCTTACAACAAGATTTCCGGCCCCGGCGTCGTTTCTTGGCTTCTCAACCCCGTCATCGAACTCCTCTCTCTCAAAGGCAACAAAGTCACCGGCGAAACCGACTTCTCCGGCTCAATTTCTCTCCAGTATTTAGACCTTTCTTCCAACAACTTTTCTGTTACGCTTCCTACTTTCGGCGAGTGTTCTTCGCTTGAGTATTTGGACCTCTCCGCTAACAAGTACTTGGGCGACATTGCACGCACTCTCTCCCCTTGCAAGAGCCTCGTTTACCTTAACGTCTCCAGCAACCAGTTCTCCGGTCCGGTTCCTTCCCTTCCCTCCGGTTCGCTACAGTTTGTGTACCTTGCTGCAAACCACTTCCACGGCCAGATTCCTCTCTCCCTCGCCGACCTCTGCTCCACTCTCCTCCAGCTCGATCTCTCCTCCAACAATCTCACCGGCGCTCTTCCCGGCGCGTTCGGCGCGTGCACTTCTCTTCAATCCCTTGACATCTCCAGCAACCTCTTCGCCGGCGCGTTGCCGATGTCGGTTCTCACGCAAATGACCAGCCTGAAAGAGCTCGCGGTTGCGTTCAACGGCTTCCTCGGTGCTCTCCCGGAGTCTCTGTCGAAGCTCTCCGCTCTGGAGTTGCTGGATCTGAGCTCCAACAACTTTAGCGGCTCAATCCCCGCCTCGCTGTGCGGCGGCGGTGACGCTGGGATTAATAATAATCTGAAGGAACTTTATCTGCAGAATAACCGGTTCACGGGTTTTATTCCGCCCACGCTCAGCAACTGTTCAAACCTCGTTGCTTTGGATTTGAGTTTCAACTTCCTCACGGGGACTATTCCTCCGAGCCTAGGGTCTCTTTCGAATCTCAAAGACTTCATCATCTGGCTCAACCAGCTCCACGGGGAGATACCGCAGGAGCTCATGTATCTTAAAAGCCTCGAGAATTTGATCCTGGATTTCAACGACTTGACTGGGAACATTCCCTCTGGCCTCGTTAACTGCACCAAGTTGAACTGGATCTCCCTCTCCAACAACAGGCTCAGCGGCGAGATTCCGCCGTGGATTGGGAAGCTTTCTAATCTCGCCATACTCAAGCTCAGCAATAACTCTTTCTCCGGCCGGATTCCGCCGGAGCTCGGCGACTGTACTAGTTTAATATGGTTGGATCTGAATACAAATATGCTCACCGGGCCCATTCCGCCGGAGCTGTTCAAGCAGTCGGGGAAGATCGCCGTGAATTTCATCAGTGGGAAGACGTATGTGTATATAAAGAACGATGGGAGCAAGGAGTGCCATGGTGCGGGGAACTTGCTTGAGTTTGCGGGGATCAGTCAGCAGCAGCTGAACAGGATTTCGACGAGGAACCCCTGCAATTTCACTAGGGTTTATGGAGGTAAGTTGCAGCCAACGTTTAACCATAATGGTTCTATGATATTTTTGGATATCTCGCACAACATGTTGTCAGGGAGTATTCCCAAGGAGATTGGGGCCATGTACTATTTGTACATTCTCAATTTGGGTCACAATAATGTGTCTGGGAGCATTCCTCAAGAGCTTGGGAAGATGAAGAATCTCAACATTCTTGATCTGTCGAATAATAGACTGGAGGGCCAAATTCCGCAGAGCCTCACGGGGCTTTCTTTGCTCACTGAGATTGACTTGTCCAACAACTTGCTTACCGGGACGATTCCTGAGTCGGGTCAATTTGATACTTTCCCTGCGGCGAAGTTTCAGAACAACTCTGGTCTATGTGGAGTTCCTCTGGGTCCGTGTGGTTCGGAGCCGGCAAACAATGGAAATGCGCAACATATGAAGTCTCACAGGAGGCAGGCTTCTCTGGCGGGGAGTGTGGCCATGGGGTTGTTGTTTTCCCTCTTTTGCGTCTTTGGTTTGATCATTATTGCCATTGAGACCAGGAAGAGGAGGAAGAAGAAGGAGGCTGCTCTTGAAGCCTATGGTGATGGTAATTCCCATTCGGGTCCGGCCAATGTGAGCTGGAAGCACACCAGTACTCGGGAAGCTCTTAGCATAAACCTTGCAACATTTGAGAAGCCGCTCCGGAAGCTTACTTTTGCGGACCTTCTTGACGCTACCAATGGTTTTCACAACGACAGTCTCATTGGCTCTGGCGGGTTTGGGGATGTGTACAAGGCTCAGTTGAAGGATGGAAGTGTTGTGGCTATCAAGAAGCTGATTCATGTTAGCGGACAAGGGGACAGGGAATTCACCGCTGAAATGGAGACTATTGGGAAAATCAAGCACAGGAACCTTGTTCCCCTGTTGGGATACTGCAAGGTAGGGGAAGAGAGGCTCTTGGTTTATGAGTACATGAAATATGGAAGTTTAGAGGATGTTCTACATGATCAGAAGAAAGCTGGGATCAAGCTGAACTGGGCCATTAGGCGGAAAATTGCTATTGGAGCTGCTAGGGGATTGGCTTTTCTTCACCACAATTGTATCCCCCACATCATTCATAGAGATATGAAGTCGAGCAATGTGTTACTTGATGAAAACCTGGAAGCCAGAGTCTCTGATTTTGGAATGGCTAGGCTTATGAGTGCTATGGATACACATTTGAGTGTGAGCACATTGGCTGGCACACCGGGGTATGTTCCTCCCGAGTACTATCAGAGCTTCAGATGCTCCACAAAAGGTGATGTCTACAGTTATGGTGTGGTTTTGTTGGAGCTGCTAACTGGGAAAAGGCCAACGGACTCGGCTGATTTTGGAGATAATAATCTTGTTGGATGGGTTAAACAACATGCCAAGCTGAAAATCAGTGATATTTTTGACCCGGAGCTCATGAAGGAAGACCCCAATCTGGAGATGGAGCTTTTGCAGCACTTGAAGATTGCGGTTTCCTGTTTGGATGATCGACCGTGGAGGCGTCCGACGATGATTCAAGTGATGGCAATGTTCAAGGAGATTCAGGCGGGATCCGGGATTGATTCTCAGTCAACCATAGCCAATGACGAGGAAGGTTTCAATGCAGTTGAAATGGTGGAGATGAGCATTAAAGAAGCCCCTGAATTGAGCAAGCATTAG
Predicted protein sequences of Glyma04g39610
>Glyma04g39610.2   sequence type=predicted peptide   gene model=Glyma04g39610   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKALYRSSLLLLLLLFISVCFASSSSPVTQQLLSFKNSLPNPSLLPNWLPNQSPCTFSGISCNDTELTSIDLSSVPLSTNLTVIASFLLSLDHLQSLSLKSTNLSGPAAMPPLSHSQCSSSLTSLDLSQNSLSASLNDMSFLASCSNLQSLNLSSNLLQFGPPPHWKLHHLRFADFSYNKISGPGVVSWLLNPVIELLSLKGNKVTGETDFSGSISLQYLDLSSNNFSVTLPTFGECSSLEYLDLSANKYLGDIARTLSPCKSLVYLNVSSNQFSGPVPSLPSGSLQFVYLAANHFHGQIPLSLADLCSTLLQLDLSSNNLTGALPGAFGACTSLQSLDISSNLFAGALPMSVLTQMTSLKELAVAFNGFLGALPESLSKLSALELLDLSSNNFSGSIPASLCGGGDAGINNNLKELYLQNNRFTGFIPPTLSNCSNLVALDLSFNFLTGTIPPSLGSLSNLKDFIIWLNQLHGEIPQELMYLKSLENLILDFNDLTGNIPSGLVNCTKLNWISLSNNRLSGEIPPWIGKLSNLAILKLSNNSFSGRIPPELGDCTSLIWLDLNTNMLTGPIPPELFKQSGKIAVNFISGKTYVYIKNDGSKECHGAGNLLEFAGISQQQLNRISTRNPCNFTRVYGGKLQPTFNHNGSMIFLDISHNMLSGSIPKEIGAMYYLYILNLGHNNVSGSIPQELGKMKNLNILDLSNNRLEGQIPQSLTGLSLLTEIDLSNNLLTGTIPESGQFDTFPAAKFQNNSGLCGVPLGPCGSEPANNGNAQHMKSHRRQASLAGSVAMGLLFSLFCVFGLIIIAIETRKRRKKKEAALEAYGDGNSHSGPANVSWKHTSTREALSINLATFEKPLRKLTFADLLDATNGFHNDSLIGSGGFGDVYKAQLKDGSVVAIKKLIHVSGQGDREFTAEMETIGKIKHRNLVPLLGYCKVGEERLLVYEYMKYGSLEDVLHDQKKAGIKLNWAIRRKIAIGAARGLAFLHHNCIPHIIHRDMKSSNVLLDENLEARVSDFGMARLMSAMDTHLSVSTLAGTPGYVPPEYYQSFRCSTKGDVYSYGVVLLELLTGKRPTDSADFGDNNLVGWVKQHAKLKISDIFDPELMKEDPNLEMELLQHLKIAVSCLDDRPWRRPTMIQVMAMFKEIQAGSGIDSQSTIANDEEGFNAVEMVEMSIKEAPELSKH*






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