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Report for Sequence Feature Glyma04g39520

Feature Type:gene_model
Chromosome:Gm04
Start:45712860
stop:45718875
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma04g39520
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G09900AT Annotation by Michelle Graham. TAIR10: 26S proteasome regulatory subunit, putative (RPN5) | chr5:3089462-3092434 REVERSE LENGTH=442 SoyBaseE_val: 0ISS
GO:0000085GO-bp Annotation by Michelle Graham. GO Biological Process: G2 phase of mitotic cell cycle SoyBaseN/AISS
GO:0006094GO-bp Annotation by Michelle Graham. GO Biological Process: gluconeogenesis SoyBaseN/AISS
GO:0006096GO-bp Annotation by Michelle Graham. GO Biological Process: glycolysis SoyBaseN/AISS
GO:0006511GO-bp Annotation by Michelle Graham. GO Biological Process: ubiquitin-dependent protein catabolic process SoyBaseN/AISS
GO:0006635GO-bp Annotation by Michelle Graham. GO Biological Process: fatty acid beta-oxidation SoyBaseN/AISS
GO:0007275GO-bp Annotation by Michelle Graham. GO Biological Process: multicellular organismal development SoyBaseN/AISS
GO:0009407GO-bp Annotation by Michelle Graham. GO Biological Process: toxin catabolic process SoyBaseN/AISS
GO:0009640GO-bp Annotation by Michelle Graham. GO Biological Process: photomorphogenesis SoyBaseN/AISS
GO:0009651GO-bp Annotation by Michelle Graham. GO Biological Process: response to salt stress SoyBaseN/AISS
GO:0009793GO-bp Annotation by Michelle Graham. GO Biological Process: embryo development ending in seed dormancy SoyBaseN/AISS
GO:0009853GO-bp Annotation by Michelle Graham. GO Biological Process: photorespiration SoyBaseN/AISS
GO:0042023GO-bp Annotation by Michelle Graham. GO Biological Process: DNA endoreduplication SoyBaseN/AISS
GO:0043161GO-bp Annotation by Michelle Graham. GO Biological Process: proteasomal ubiquitin-dependent protein catabolic process SoyBaseN/AISS
GO:0043248GO-bp Annotation by Michelle Graham. GO Biological Process: proteasome assembly SoyBaseN/AISS
GO:0046686GO-bp Annotation by Michelle Graham. GO Biological Process: response to cadmium ion SoyBaseN/AISS
GO:0051510GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of unidimensional cell growth SoyBaseN/AISS
GO:0051788GO-bp Annotation by Michelle Graham. GO Biological Process: response to misfolded protein SoyBaseN/AISS
GO:0080129GO-bp Annotation by Michelle Graham. GO Biological Process: proteasome core complex assembly SoyBaseN/AISS
GO:0000502GO-cc Annotation by Michelle Graham. GO Cellular Compartment: proteasome complex SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0005829GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytosol SoyBaseN/AISS
GO:0008541GO-cc Annotation by Michelle Graham. GO Cellular Compartment: proteasome regulatory particle, lid subcomplex SoyBaseN/AISS
GO:0009506GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
KOG1498 KOG 26S proteasome regulatory complex, subunit RPN5/PSMD12 JGI ISS
PTHR10855Panther PROTEASOME REGULATORY SUBUNITS JGI ISS
PTHR10855:SF1Panther PROTEASOME REGULATORY SUBUNIT-RELATED JGI ISS
PF01399PFAM PCI domain JGI ISS
UniRef100_G7LC77UniRef Annotation by Michelle Graham. Most informative UniRef hit: 26S proteasome non-ATPase regulatory subunit n=1 Tax=Medicago truncatula RepID=G7LC77_MEDTR SoyBaseE_val: 0ISS
UniRef100_I1JY67UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JY67_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma04g39520
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g39520
ParalogEvidenceComments
Glyma06g15330 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g39520 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.04g217500 Wm82.a2.v1IGC As supplied by JGI

References for Glyma04g39520
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Transcripts of Glyma04g39520
>Glyma04g39520.2   sequence type=transcript   gene model=Glyma04g39520   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TGGACGGAGTTGACGATTCTTCTGGATTTTCAGGAGAACGCCGGGAATTTAGAAGCGGCCATAGAACAATTGCTGAATGCGGAGAAGCAAGCGAGGCTCGCCGGCGACGTCGCCGCCACCAGAAACGCCGTCACTGAAATTTTACGGATGTGCTTCGAAGCGCGTGCCTGGAAAACCCTCAATGACCAGATTGTTCTCTTGTCCAAACGCCGTGGCCAGCTTAAGCAGGCTGTGACAGCAATGGTCCAGCAGGCTATGCAATATATTGATGAGACACCAGATCTTGAAACTCGTATAGAACTCATCAAAATCTTGAACAGTGTATCTGCAGGAAAGATATACGTTGAGATTGAGAGAGCTCGGTTGATCAAGAAACTTGCAAAAATCAAGGAAGAACAAGGACTTATAGCTGAAGCTGCTGATTTGATGCAAGAAATTGCGGTGGAAACTTTTGGTGCCATGGCTAAAACTGAGAAAATCGCATTCATTCTTGAACAAGTTCGTTTGTGTCTAGACCGCCAGGATTATGTTCGTGCACAAATACTCTCAAGAAAGATTAGTACGAGAGTGTTTGATGCTGATGTTTCAAAGGAAAAGAAAAAGCCTAAAGAAGGTGATAATGTTGTTGAAGAAGCTCCTGTTGATATACCATCTCTACCGGAGTTGAAGCGAATCTACTATGAACTAATGATTCGGTATTATTCCCATAAAAATGATTATCTTGAAATTTGCCGATGCTACAAGGCAATATATGAGATTCCATCTGTCAAAGAAAATCCTGCCGAGTGGATTCCAATCCTGAGGAAAATATGTTGGTATTTGGTTCTATCACCGCATGATCCAATGCAGTCAAGCCTTCTCAATTCTACCTTGGAGGATAAGAATCTGTCTGAGATTCCAAACTTTAAGTTACTGTTGAAACAGTTGGTCACTATGGAGGTTATCCAGTGGACAACTCTTTGGGATTCATACAAGGATGAATTTGAGAATGAGAGTAACTTAGGAAAGAATTTGGGTGAAAAAGCAGCTGAAGATCTGAGGGAAAGAGTAATTGAACATAATATTATTGTTATATCAAAATACTATGGAAAGATTACTTTGAAGAGACTTGCGGAGCTTTTGTGTCTCAGTGTTCAGAAAGCTGAGAAGCATCTTTCAGATATGGTTGTGTCTAAGGCATTGGTGGCGAAGATTGATAGACCCATGGGAATAGTTTGTTTCCAAAGAGCTAAGGATAGCAATGACGTTCTTAACTCATGGGCAGCAAACTTGGAGAGGCTGCTTGATCTTGTGGAGAAGAGCTGCCATCAAATACACAAGGAAACCATGGTGCATAAAGCTGCCTTGAAGGTTTAAGAAGCTCCATATCACTGTTAAAAGTTACAGGTGAACCCCAATATAGATGTGATTTTGGACTGAAGGTGCCGTAAAAGGATGTTAATTTGAATTATTGCTGATTAGATTGGTGAGGTATTGGATTAAAAGACGATGCTTTCTTTTTCCATTTTAGATACTGTCAATGATGCAATTAGGGTAGAGATGGTATATGCTTTTTAGCGTTGTATACTAATGGTGAATACCTTACCTGTTACCACCGACTTATGACAGGATCCTAAACGGTCTTGTTTGTAGCTCAGTGGGAAGAAATCGAGTGCTCTGATATTCTTTGTCTGATTAATTTTTCCGTATTTATTGGGCTCATTATTCCAGTGTCTTGTGCATTTCGGATGCGGGTGTCTTTTCATTCTCCCCCATTACGTTTTGCAAGCTGCATTTTCTGCTTTTGATTACAAAAATTCGGAGTTTCTTTGGACTATGTTTGGATTGGTGGTGGTAAAGGATGGAGCAGAGAGAGATAAGTGAAAGTGGGGAAGTTGTTCTATTATTTGGTTCCTAAAACATAGGAATGAAACATAATGGAAAAGGATGAATACGATCTATTTTAGGGTGCATTTGATGGAATAAAGTTATTATATT
Coding sequences of Glyma04g39520
>Glyma04g39520.1   sequence type=CDS   gene model=Glyma04g39520   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTATGGAGAACGCCGGGAATTTAGAAGCGGCCATAGAACAATTGCTGAATGCGGAGAAGCAAGCGAGGCTCGCCGGCGACGTCGCCGCCACCAGAAACGCCGTCACTGAAATTTTACGGATGTGCTTCGAAGCGCGTGCCTGGAAAACCCTCAATGACCAGATTGTTCTCTTGTCCAAACGCCGTGGCCAGCTTAAGCAGGCTGTGACAGCAATGGTCCAGCAGGCTATGCAATATATTGATGAGACACCAGATCTTGAAACTCGTATAGAACTCATCAAAATCTTGAACAGTGTATCTGCAGGAAAGATATACGTTGAGATTGAGAGAGCTCGGTTGATCAAGAAACTTGCAAAAATCAAGGAAGAACAAGGACTTATAGCTGAAGCTGCTGATTTGATGCAAGAAATTGCGGTGGAAACTTTTGGTGCCATGGCTAAAACTGAGAAAATCGCATTCATTCTTGAACAAGTTCGTTTGTGTCTAGACCGCCAGGATTATGTTCGTGCACAAATACTCTCAAGAAAGATTAGTACGAGAGTGTTTGATGCTGATGTTTCAAAGGAAAAGAAAAAGCCTAAAGAAGGTGATAATGTTGTTGAAGAAGCTCCTGTTGATATACCATCTCTACCGGAGTTGAAGCGAATCTACTATGAACTAATGATTCGGTATTATTCCCATAAAAATGATTATCTTGAAATTTGCCGATGCTACAAGGCAATATATGAGATTCCATCTGTCAAAGAAAATCCTGCCGAGTGGATTCCAATCCTGAGGAAAATATGTTGGTATTTGGTTCTATCACCGCATGATCCAATGCAGTCAAGCCTTCTCAATTCTACCTTGGAGGATAAGAATCTGTCTGAGATTCCAAACTTTAAGTTACTGTTGAAACAGTTGGTCACTATGGAGGTTATCCAGTGGACAACTCTTTGGGATTCATACAAGGATGAATTTGAGAATGAGAGTAACTTAGGAAAGAATTTGGGTGAAAAAGCAGCTGAAGATCTGAGGGAAAGAGTAATTGAACATAATATTATTGTTATATCAAAATACTATGGAAAGATTACTTTGAAGAGACTTGCGGAGCTTTTGTGTCTCAGTGTTCAGAAAGCTGAGAAGCATCTTTCAGATATGGTTGTGTCTAAGGCATTGGTGGCGAAGATTGATAGACCCATGGGAATAGTTTGTTTCCAAAGAGCTAAGGATAGCAATGACGTTCTTAACTCATGGGCAGCAAACTTGGAGAGGCTGCTTGATCTTGTGGAGAAGAGCTGCCATCAAATACACAAGGAAACCATGGTGCATAAAGCTGCCTTGAAGGTTTAA

>Glyma04g39520.2   sequence type=CDS   gene model=Glyma04g39520   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TGGACGGAGTTGACGATTCTTCTGGATTTTCAGGAGAACGCCGGGAATTTAGAAGCGGCCATAGAACAATTGCTGAATGCGGAGAAGCAAGCGAGGCTCGCCGGCGACGTCGCCGCCACCAGAAACGCCGTCACTGAAATTTTACGGATGTGCTTCGAAGCGCGTGCCTGGAAAACCCTCAATGACCAGATTGTTCTCTTGTCCAAACGCCGTGGCCAGCTTAAGCAGGCTGTGACAGCAATGGTCCAGCAGGCTATGCAATATATTGATGAGACACCAGATCTTGAAACTCGTATAGAACTCATCAAAATCTTGAACAGTGTATCTGCAGGAAAGATATACGTTGAGATTGAGAGAGCTCGGTTGATCAAGAAACTTGCAAAAATCAAGGAAGAACAAGGACTTATAGCTGAAGCTGCTGATTTGATGCAAGAAATTGCGGTGGAAACTTTTGGTGCCATGGCTAAAACTGAGAAAATCGCATTCATTCTTGAACAAGTTCGTTTGTGTCTAGACCGCCAGGATTATGTTCGTGCACAAATACTCTCAAGAAAGATTAGTACGAGAGTGTTTGATGCTGATGTTTCAAAGGAAAAGAAAAAGCCTAAAGAAGGTGATAATGTTGTTGAAGAAGCTCCTGTTGATATACCATCTCTACCGGAGTTGAAGCGAATCTACTATGAACTAATGATTCGGTATTATTCCCATAAAAATGATTATCTTGAAATTTGCCGATGCTACAAGGCAATATATGAGATTCCATCTGTCAAAGAAAATCCTGCCGAGTGGATTCCAATCCTGAGGAAAATATGTTGGTATTTGGTTCTATCACCGCATGATCCAATGCAGTCAAGCCTTCTCAATTCTACCTTGGAGGATAAGAATCTGTCTGAGATTCCAAACTTTAAGTTACTGTTGAAACAGTTGGTCACTATGGAGGTTATCCAGTGGACAACTCTTTGGGATTCATACAAGGATGAATTTGAGAATGAGAGTAACTTAGGAAAGAATTTGGGTGAAAAAGCAGCTGAAGATCTGAGGGAAAGAGTAATTGAACATAATATTATTGTTATATCAAAATACTATGGAAAGATTACTTTGAAGAGACTTGCGGAGCTTTTGTGTCTCAGTGTTCAGAAAGCTGAGAAGCATCTTTCAGATATGGTTGTGTCTAAGGCATTGGTGGCGAAGATTGATAGACCCATGGGAATAGTTTGTTTCCAAAGAGCTAAGGATAGCAATGACGTTCTTAACTCATGGGCAGCAAACTTGGAGAGGCTGCTTGATCTTGTGGAGAAGAGCTGCCATCAAATACACAAGGAAACCATGGTGCATAAAGCTGCCTTGAAGGTTTAA
Predicted protein sequences of Glyma04g39520
>Glyma04g39520.1   sequence type=predicted peptide   gene model=Glyma04g39520   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAMENAGNLEAAIEQLLNAEKQARLAGDVAATRNAVTEILRMCFEARAWKTLNDQIVLLSKRRGQLKQAVTAMVQQAMQYIDETPDLETRIELIKILNSVSAGKIYVEIERARLIKKLAKIKEEQGLIAEAADLMQEIAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISTRVFDADVSKEKKKPKEGDNVVEEAPVDIPSLPELKRIYYELMIRYYSHKNDYLEICRCYKAIYEIPSVKENPAEWIPILRKICWYLVLSPHDPMQSSLLNSTLEDKNLSEIPNFKLLLKQLVTMEVIQWTTLWDSYKDEFENESNLGKNLGEKAAEDLRERVIEHNIIVISKYYGKITLKRLAELLCLSVQKAEKHLSDMVVSKALVAKIDRPMGIVCFQRAKDSNDVLNSWAANLERLLDLVEKSCHQIHKETMVHKAALKV*

>Glyma04g39520.2   sequence type=predicted peptide   gene model=Glyma04g39520   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
WTELTILLDFQENAGNLEAAIEQLLNAEKQARLAGDVAATRNAVTEILRMCFEARAWKTLNDQIVLLSKRRGQLKQAVTAMVQQAMQYIDETPDLETRIELIKILNSVSAGKIYVEIERARLIKKLAKIKEEQGLIAEAADLMQEIAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISTRVFDADVSKEKKKPKEGDNVVEEAPVDIPSLPELKRIYYELMIRYYSHKNDYLEICRCYKAIYEIPSVKENPAEWIPILRKICWYLVLSPHDPMQSSLLNSTLEDKNLSEIPNFKLLLKQLVTMEVIQWTTLWDSYKDEFENESNLGKNLGEKAAEDLRERVIEHNIIVISKYYGKITLKRLAELLCLSVQKAEKHLSDMVVSKALVAKIDRPMGIVCFQRAKDSNDVLNSWAANLERLLDLVEKSCHQIHKETMVHKAALKV*






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