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Report for Sequence Feature Glyma04g39500

Feature Type:gene_model
Chromosome:Gm04
Start:45694819
stop:45700103
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G21790AT Annotation by Michelle Graham. TAIR10: ribonucleotide reductase 1 | chr2:9293529-9297580 FORWARD LENGTH=816 SoyBaseE_val: 0ISS
GO:0006094GO-bp Annotation by Michelle Graham. GO Biological Process: gluconeogenesis SoyBaseN/AISS
GO:0006260GO-bp Annotation by Michelle Graham. GO Biological Process: DNA replication SoyBaseN/AISS
GO:0006261GO-bp Annotation by Michelle Graham. GO Biological Process: DNA-dependent DNA replication SoyBaseN/AISS
GO:0007010GO-bp Annotation by Michelle Graham. GO Biological Process: cytoskeleton organization SoyBaseN/AISS
GO:0009165GO-bp Annotation by Michelle Graham. GO Biological Process: nucleotide biosynthetic process SoyBaseN/AISS
GO:0009202GO-bp Annotation by Michelle Graham. GO Biological Process: deoxyribonucleoside triphosphate biosynthetic process SoyBaseN/AISS
GO:0010498GO-bp Annotation by Michelle Graham. GO Biological Process: proteasomal protein catabolic process SoyBaseN/AISS
GO:0046686GO-bp Annotation by Michelle Graham. GO Biological Process: response to cadmium ion SoyBaseN/AISS
GO:0055114GO-bp Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0005971GO-cc Annotation by Michelle Graham. GO Cellular Compartment: ribonucleoside-diphosphate reductase complex SoyBaseN/AISS
GO:0004748GO-mf Annotation by Michelle Graham. GO Molecular Function: ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor SoyBaseN/AISS
GO:0005524GO-mf Annotation by Michelle Graham. GO Molecular Function: ATP binding SoyBaseN/AISS
KOG1112 KOG Ribonucleotide reductase, alpha subunit JGI ISS
PTHR11573Panther RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE LARGE CHAIN JGI ISS
PF00317PFAM Ribonucleotide reductase, all-alpha domain JGI ISS
PF02867PFAM Ribonucleotide reductase, barrel domain JGI ISS
PF03477PFAM ATP cone domain JGI ISS
UniRef100_I1JY66UniRef Annotation by Michelle Graham. Most informative UniRef hit: Ribonucleoside-diphosphate reductase n=1 Tax=Glycine max RepID=I1JY66_SOYBN SoyBaseE_val: 0ISS
UniRef100_I1JY66UniRef Annotation by Michelle Graham. Best UniRef hit: Ribonucleoside-diphosphate reductase n=1 Tax=Glycine max RepID=I1JY66_SOYBN SoyBaseE_val: 0ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

ParalogEvidenceComments
Glyma06g15350 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Corresponding NameAnnotation VersionEvidenceComments
Glyma.04g217300 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma04g39500.2   sequence type=transcript   gene model=Glyma04g39500   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CTTTCCATCCGCTATATATTGACGCCATTGTCCCTTATCTTACACGCGCCAAACCTGTCTGTTTCACTTCCCATTTCAAAACCCACCAATCCATCACCAGATAACACACAAAAAAAAAAAAAATGTACGTGGTAAAGAGGGACGGGCGGCAAGAGGCGGTTCACTTCGACAAAATAACCGCGCGCCTCAAGAAGCTTAGTTATGGCCTCAGCGCAGATCACTGCGACGCCGTTTTGGTCTCCCAGAAAGTCTGCGCCGGCGTCTACAAAGGCGTCACCACCAGCCAACTCGACGAGTTGGCCGCCGAAACCGCCGCCGCCATGACCACCAACCATCCCGACTACGCTTGCTTGGCTGCTAGGATTGCCGTTTCGAATCTGCACAAGAACACCAAGAAATCCTTCTCCGAGACGATCAAGATCATGTACTATCATTTTAGTGAGAGATCTGGGCTGAAGGCTCCTCTGATCGCCGATGATGTTTATGAAATAATTATGAAGAATGCTGCTCGTCTAGACAGTGAGATAATCTATGACAGAGACTTTGACTATGATTATTTTGGATTCAAAACCCTTGAGAGGTCTTACCTCTTGAAGGTTCAAGGGAAGGTTGTGGAAAGGCCTCAACACATGTTGATGAGGGTTGCTGTTGGGATTCACAAGGATGACATAGATTCTGCCATCAAAACATACCACATGATGTCTCAACGATGGTTTACTCATGCATCTCCGACACTTTTCAATGCTGGAACACCTAGGCCTCAACTGAGTAGTTGCTTCCTTGTGTGTATGAAAGATGATAGTATAGAGGGGATATACGAAACTTTGAAGGAGTGTGCTATCATCAGCAAATCAGCTGGAGGAATTGGTGTCTCCATTCATGACATTCGTGCTACAGGCAGTTATATTCGTGGGACAAATGGGACGTCCAATGGCATTGTTCCAATGTTGCGTGTGTTCAATGATACTGCCCGCTATGTTGATCAGGGGGGAGGCAAGAGGAAAGGTGCATTTGCTGTGTACTTGGAGCCATGGCATGCTGATATGTTTGAATTCTTGGATTTAAGGAAAAATCATGGGAAGGAAGAGCATCGTGCTCGAGATCTGTTTTATGCTCTTTGGGTGCCTGATCTCTTTATGGAAAGAGTTCAGAGCAATGGCCAATGGTCTTTGTTTTGTCCCAGTGAAGCACCAGGTTTGGCTGATTGTTGGGGTGAGAAATTTGAGGAGCTTTATCATCGATATGAAAGAGAAGGAAAAGCAAAGAAGGTTGTCCAGGCACAGAACCTCTGGTTTGAAATTCTGAAGTCACAGATAGAAACTGGAACCCCTTACATGCTTTTTAAGGATACTTGCAATAGGAAAAGCAACCAACAGAATTTGGGTACAATTAAATCATCAAACTTGTGTACTGAGATAATTGAGTATTCAAGTCCAACTGAAACTGCTGTGTGCAATCTGGCATCAATTGCACTACCACGATATGTAAGAGAAAAGGGTGTCCCGATGGAGTCTCATCCATCCAAGCTTGTTGGAAGCACAGGCTCTGGAAATCGGTATTTTGACTTTGATAAACTAGCAGAGATTACTGCACTGGTCACAACAAACCTGAACAAAGTAATTGATGTTAATTACTACCCAGTTGAAAATGCAAAACGGTCAAACTTACGGCACAGACCAATTGGTATAGGAGTACAGGGTCTTGCTGATACTTTCATACTACTTGGCATGGCATTTGATTCACCAGAGGCTCAGCAGTTAAACCAGGAGATATTTGAGACTATATACTATCATGCTCTAAAAACTTCATGTGATTTGGCTGCAAAAGAAGGTCCCTATGAGACATATAGTGGTAGTCCTTTAAGCAAGGGAATTCTTCAGCCAGACATGTGGGGTGTGACTCCCTCTAATCGTTGGGATTGGGATGCACTTCGGGAGATGATATCAAGTAATGGTGCAAGAAATTCACTTCTCGTGGCCCCTATGCCAACTGCATCCACTAGCCAGATTCTTGGAAATAATGAGTGTTTTGAACCATATACTTCAAATATCTACAGTCGTAGAGTTTTAAGTGGTGAATTTGTTGTTGTGAACAAGCATCTTCTTCATGACTTGACTGAAATGGGACTGTGGTCTCCTACATTAAAGAATAAGATTATCTATGAAGATGGCTCTGTTCAGAAAATTCCAGAAATGCCTGCTGTACTGAAGAGTATATACAAAACTGTTTGGGAGATTAAACAAAGGACATTGGTAGATATGGCTGCTGATCGAGGATGCTACATAGATCAGAGCCAAAGTTTAAATATTCACATGGATCAACCCAACTTTGGAAAGCTGACTTCCTTGCATTTCTATGCATGGTCCAAGGGTCTAAAGACTGGAATGTATTATCTTCGATCGCGAGCTGCAGCCGATGCTATTAAGTTCACCGTTGACACCTCTGCTCTCAAAGAAAAATCCAATGTAGAGTATGATGATAATACAAAAATGGCACAGATGGTGTGCTCTTTAACAAACCGTGAAGAGTGCTTAGCTTGTGGGAGTTGAAATGTTTCAAAAGTATTGGGTTGTGTAGGGCTG

>Glyma04g39500.1   sequence type=CDS   gene model=Glyma04g39500   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTACGTGGTAAAGAGGGACGGGCGGCAAGAGGCGGTTCACTTCGACAAAATAACCGCGCGCCTCAAGAAGCTTAGTTATGGCCTCAGCGCAGATCACTGCGACGCCGTTTTGGTCTCCCAGAAAGTCTGCGCCGGCGTCTACAAAGGCGTCACCACCAGCCAACTCGACGAGTTGGCCGCCGAAACCGCCGCCGCCATGACCACCAACCATCCCGACTACGCTTGCTTGGCTGCTAGGATTGCCGTTTCGAATCTGCACAAGAACACCAAGAAATCCTTCTCCGAGACGATCAAGATCATGTACTATCATTTTAGTGAGAGATCTGGGCTGAAGGCTCCTCTGATCGCCGATGATGTTTATGAAATAATTATGAAGAATGCTGCTCGTCTAGACAGTGAGATAATCTATGACAGAGACTTTGACTATGATTATTTTGGATTCAAAACCCTTGAGAGGTCTTACCTCTTGAAGGTTCAAGGGAAGGTTGTGGAAAGGCCTCAACACATGTTGATGAGGGTTGCTGTTGGGATTCACAAGGATGACATAGATTCTGCCATCAAAACATACCACATGATGTCTCAACGATGGTTTACTCATGCATCTCCGACACTTTTCAATGCTGGAACACCTAGGCCTCAACTGAGTAGTTGCTTCCTTGTGTGTATGAAAGATGATAGTATAGAGGGGATATACGAAACTTTGAAGGAGTGTGCTATCATCAGCAAATCAGCTGGAGGAATTGGTGTCTCCATTCATGACATTCGTGCTACAGGCAGTTATATTCGTGGGACAAATGGGACGTCCAATGGCATTGTTCCAATGTTGCGTGTGTTCAATGATACTGCCCGCTATGTTGATCAGGGGGGAGGCAAGAGGAAAGGTGCATTTGCTGTGTACTTGGAGCCATGGCATGCTGATATGTTTGAATTCTTGGATTTAAGGAAAAATCATGGGAAGGAAGAGCATCGTGCTCGAGATCTGTTTTATGCTCTTTGGGTGCCTGATCTCTTTATGGAAAGAGTTCAGAGCAATGGCCAATGGTCTTTGTTTTGTCCCAGTGAAGCACCAGGTTTGGCTGATTGTTGGGGTGAGAAATTTGAGGAGCTTTATCATCGATATGAAAGAGAAGGAAAAGCAAAGAAGGTTGTCCAGGCACAGAACCTCTGGTTTGAAATTCTGAAGTCACAGATAGAAACTGGAACCCCTTACATGCTTTTTAAGGATACTTGCAATAGGAAAAGCAACCAACAGAATTTGGGTACAATTAAATCATCAAACTTGTGTACTGAGATAATTGAGTATTCAAGTCCAACTGAAACTGCTGTGTGCAATCTGGCATCAATTGCACTACCACGATATGTAAGAGAAAAGGGTGTCCCGATGGAGTCTCATCCATCCAAGCTTGTTGGAAGCACAGGCTCTGGAAATCGGTATTTTGACTTTGATAAACTAGCAGAGATTACTGCACTGGTCACAACAAACCTGAACAAAGTAATTGATGTTAATTACTACCCAGTTGAAAATGCAAAACGGTCAAACTTACGGCACAGACCAATTGGTATAGGAGTACAGGGTCTTGCTGATACTTTCATACTACTTGGCATGGCATTTGATTCACCAGAGGCTCAGCAGTTAAACCAGGAGATATTTGAGACTATATACTATCATGCTCTAAAAACTTCATGTGATTTGGCTGCAAAAGAAGGTCCCTATGAGACATATAGTGGTAGTCCTTTAAGCAAGGGAATTCTTCAGCCAGACATGTGGGGTGTGACTCCCTCTAATCGTTGGGATTGGGATGCACTTCGGGAGATGATATCAAGTAATGGTGCAAGAAATTCACTTCTCGTGGCCCCTATGCCAACTGCATCCACTAGCCAGATTCTTGGAAATAATGAGTGTTTTGAACCATATACTTCAAATATCTACAGTCGTAGAGTTTTAAGTGGTGAATTTGTTGTTGTGAACAAGCATCTTCTTCATGACTTGACTGAAATGGGACTGTGGTCTCCTACATTAAAGAATAAGATTATCTATGAAGATGGCTCTGTTCAGAAAATTCCAGAAATGCCTGCTGTACTGAAGAGTATATACAAAACTGTTTGGGAGATTAAACAAAGGACATTGGTAGATATGGCTGCTGATCGAGGATGCTACATAGATCAGAGCCAAAGTTTAAATATTCACATGGATCAACCCAACTTTGGAAAGCTGACTTCCTTGCATTTCTATGCATGGTCCAAGGGTCTAAAGACTGGAATGTATTATCTTCGATCGCGAGCTGCAGCCGATGCTATTAAGTTCACCGTTGACACCTCTGCTCTCAAAGAAAAATCCAATGTAGAGTATGATGATAATACAAAAATGGCACAGATGGTGTGCTCTTTAACAAACCGTGAAGAGTGCTTAGCTTGTGGGAGTTGA

>Glyma04g39500.2   sequence type=CDS   gene model=Glyma04g39500   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTACGTGGTAAAGAGGGACGGGCGGCAAGAGGCGGTTCACTTCGACAAAATAACCGCGCGCCTCAAGAAGCTTAGTTATGGCCTCAGCGCAGATCACTGCGACGCCGTTTTGGTCTCCCAGAAAGTCTGCGCCGGCGTCTACAAAGGCGTCACCACCAGCCAACTCGACGAGTTGGCCGCCGAAACCGCCGCCGCCATGACCACCAACCATCCCGACTACGCTTGCTTGGCTGCTAGGATTGCCGTTTCGAATCTGCACAAGAACACCAAGAAATCCTTCTCCGAGACGATCAAGATCATGTACTATCATTTTAGTGAGAGATCTGGGCTGAAGGCTCCTCTGATCGCCGATGATGTTTATGAAATAATTATGAAGAATGCTGCTCGTCTAGACAGTGAGATAATCTATGACAGAGACTTTGACTATGATTATTTTGGATTCAAAACCCTTGAGAGGTCTTACCTCTTGAAGGTTCAAGGGAAGGTTGTGGAAAGGCCTCAACACATGTTGATGAGGGTTGCTGTTGGGATTCACAAGGATGACATAGATTCTGCCATCAAAACATACCACATGATGTCTCAACGATGGTTTACTCATGCATCTCCGACACTTTTCAATGCTGGAACACCTAGGCCTCAACTGAGTAGTTGCTTCCTTGTGTGTATGAAAGATGATAGTATAGAGGGGATATACGAAACTTTGAAGGAGTGTGCTATCATCAGCAAATCAGCTGGAGGAATTGGTGTCTCCATTCATGACATTCGTGCTACAGGCAGTTATATTCGTGGGACAAATGGGACGTCCAATGGCATTGTTCCAATGTTGCGTGTGTTCAATGATACTGCCCGCTATGTTGATCAGGGGGGAGGCAAGAGGAAAGGTGCATTTGCTGTGTACTTGGAGCCATGGCATGCTGATATGTTTGAATTCTTGGATTTAAGGAAAAATCATGGGAAGGAAGAGCATCGTGCTCGAGATCTGTTTTATGCTCTTTGGGTGCCTGATCTCTTTATGGAAAGAGTTCAGAGCAATGGCCAATGGTCTTTGTTTTGTCCCAGTGAAGCACCAGGTTTGGCTGATTGTTGGGGTGAGAAATTTGAGGAGCTTTATCATCGATATGAAAGAGAAGGAAAAGCAAAGAAGGTTGTCCAGGCACAGAACCTCTGGTTTGAAATTCTGAAGTCACAGATAGAAACTGGAACCCCTTACATGCTTTTTAAGGATACTTGCAATAGGAAAAGCAACCAACAGAATTTGGGTACAATTAAATCATCAAACTTGTGTACTGAGATAATTGAGTATTCAAGTCCAACTGAAACTGCTGTGTGCAATCTGGCATCAATTGCACTACCACGATATGTAAGAGAAAAGGGTGTCCCGATGGAGTCTCATCCATCCAAGCTTGTTGGAAGCACAGGCTCTGGAAATCGGTATTTTGACTTTGATAAACTAGCAGAGATTACTGCACTGGTCACAACAAACCTGAACAAAGTAATTGATGTTAATTACTACCCAGTTGAAAATGCAAAACGGTCAAACTTACGGCACAGACCAATTGGTATAGGAGTACAGGGTCTTGCTGATACTTTCATACTACTTGGCATGGCATTTGATTCACCAGAGGCTCAGCAGTTAAACCAGGAGATATTTGAGACTATATACTATCATGCTCTAAAAACTTCATGTGATTTGGCTGCAAAAGAAGGTCCCTATGAGACATATAGTGGTAGTCCTTTAAGCAAGGGAATTCTTCAGCCAGACATGTGGGGTGTGACTCCCTCTAATCGTTGGGATTGGGATGCACTTCGGGAGATGATATCAAGTAATGGTGCAAGAAATTCACTTCTCGTGGCCCCTATGCCAACTGCATCCACTAGCCAGATTCTTGGAAATAATGAGTGTTTTGAACCATATACTTCAAATATCTACAGTCGTAGAGTTTTAAGTGGTGAATTTGTTGTTGTGAACAAGCATCTTCTTCATGACTTGACTGAAATGGGACTGTGGTCTCCTACATTAAAGAATAAGATTATCTATGAAGATGGCTCTGTTCAGAAAATTCCAGAAATGCCTGCTGTACTGAAGAGTATATACAAAACTGTTTGGGAGATTAAACAAAGGACATTGGTAGATATGGCTGCTGATCGAGGATGCTACATAGATCAGAGCCAAAGTTTAAATATTCACATGGATCAACCCAACTTTGGAAAGCTGACTTCCTTGCATTTCTATGCATGGTCCAAGGGTCTAAAGACTGGAATGTATTATCTTCGATCGCGAGCTGCAGCCGATGCTATTAAGTTCACCGTTGACACCTCTGCTCTCAAAGAAAAATCCAATGTAGAGTATGATGATAATACAAAAATGGCACAGATGGTGTGCTCTTTAACAAACCGTGAAGAGTGCTTAGCTTGTGGGAGTTGA

>Glyma04g39500.1   sequence type=predicted peptide   gene model=Glyma04g39500   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MYVVKRDGRQEAVHFDKITARLKKLSYGLSADHCDAVLVSQKVCAGVYKGVTTSQLDELAAETAAAMTTNHPDYACLAARIAVSNLHKNTKKSFSETIKIMYYHFSERSGLKAPLIADDVYEIIMKNAARLDSEIIYDRDFDYDYFGFKTLERSYLLKVQGKVVERPQHMLMRVAVGIHKDDIDSAIKTYHMMSQRWFTHASPTLFNAGTPRPQLSSCFLVCMKDDSIEGIYETLKECAIISKSAGGIGVSIHDIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAVYLEPWHADMFEFLDLRKNHGKEEHRARDLFYALWVPDLFMERVQSNGQWSLFCPSEAPGLADCWGEKFEELYHRYEREGKAKKVVQAQNLWFEILKSQIETGTPYMLFKDTCNRKSNQQNLGTIKSSNLCTEIIEYSSPTETAVCNLASIALPRYVREKGVPMESHPSKLVGSTGSGNRYFDFDKLAEITALVTTNLNKVIDVNYYPVENAKRSNLRHRPIGIGVQGLADTFILLGMAFDSPEAQQLNQEIFETIYYHALKTSCDLAAKEGPYETYSGSPLSKGILQPDMWGVTPSNRWDWDALREMISSNGARNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNKHLLHDLTEMGLWSPTLKNKIIYEDGSVQKIPEMPAVLKSIYKTVWEIKQRTLVDMAADRGCYIDQSQSLNIHMDQPNFGKLTSLHFYAWSKGLKTGMYYLRSRAAADAIKFTVDTSALKEKSNVEYDDNTKMAQMVCSLTNREECLACGS*

>Glyma04g39500.2   sequence type=predicted peptide   gene model=Glyma04g39500   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MYVVKRDGRQEAVHFDKITARLKKLSYGLSADHCDAVLVSQKVCAGVYKGVTTSQLDELAAETAAAMTTNHPDYACLAARIAVSNLHKNTKKSFSETIKIMYYHFSERSGLKAPLIADDVYEIIMKNAARLDSEIIYDRDFDYDYFGFKTLERSYLLKVQGKVVERPQHMLMRVAVGIHKDDIDSAIKTYHMMSQRWFTHASPTLFNAGTPRPQLSSCFLVCMKDDSIEGIYETLKECAIISKSAGGIGVSIHDIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAVYLEPWHADMFEFLDLRKNHGKEEHRARDLFYALWVPDLFMERVQSNGQWSLFCPSEAPGLADCWGEKFEELYHRYEREGKAKKVVQAQNLWFEILKSQIETGTPYMLFKDTCNRKSNQQNLGTIKSSNLCTEIIEYSSPTETAVCNLASIALPRYVREKGVPMESHPSKLVGSTGSGNRYFDFDKLAEITALVTTNLNKVIDVNYYPVENAKRSNLRHRPIGIGVQGLADTFILLGMAFDSPEAQQLNQEIFETIYYHALKTSCDLAAKEGPYETYSGSPLSKGILQPDMWGVTPSNRWDWDALREMISSNGARNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNKHLLHDLTEMGLWSPTLKNKIIYEDGSVQKIPEMPAVLKSIYKTVWEIKQRTLVDMAADRGCYIDQSQSLNIHMDQPNFGKLTSLHFYAWSKGLKTGMYYLRSRAAADAIKFTVDTSALKEKSNVEYDDNTKMAQMVCSLTNREECLACGS*







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