Report for Sequence Feature Glyma04g39480
Feature Type: gene_model
Chromosome: Gm04
Start: 45683793
stop: 45687525
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma04g39480
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT1G76010 AT
Annotation by Michelle Graham. TAIR10: Alba DNA/RNA-binding protein | chr1:28528505-28530488 REVERSE LENGTH=350
SoyBase E_val: 2.00E-74 ISS
GO:0008150 GO-bp
Annotation by Michelle Graham. GO Biological Process: biological process
SoyBase N/A ISS
GO:0005576 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: extracellular region
SoyBase N/A ISS
GO:0005829 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: cytosol
SoyBase N/A ISS
GO:0003676 GO-mf
Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding
SoyBase N/A ISS
KOG2567
KOG
Uncharacterized conserved protein
JGI ISS
PTHR13516 Panther
RIBONUCLEASE P 25KDA SUBUNIT-RELATED
JGI ISS
PF01918 PFAM
Alba
JGI ISS
UniRef100_G7JAE0 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Ribonuclease P protein subunit p25 n=1 Tax=Medicago truncatula RepID=G7JAE0_MEDTR
SoyBase E_val: 8.00E-107 ISS
UniRef100_I1JY64 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JY64_SOYBN
SoyBase E_val: 2.00E-168 ISS
Expression Patterns of Glyma04g39480
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma04g39480
Paralog Evidence Comments
Glyma06g15380 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma04g39480 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.04g217100 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma04g39480
Coding sequences of Glyma04g39480
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma04g39480.2 sequence type=CDS gene model=Glyma04g39480 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGATAGGTATCAGAGGGTAGAGAAGCCCAAGGCAGAGAGCCCTATAAACGAGAACGAGATACGCGTTACTTCTCAAGGAAGGACGAGGAATTACATCACCTACGCCACCACTCTCCTTCAGGAGAAAGGATCTAGTGAAATTGTTCTCAAAGCAATGGGACGTGCAATAAATAAGACTGTAATGATTGCTGAACTGATCAAGAGAAGGATTGTTGGTCTGCATCAAAACACCCAAATTGGATCAACTGATATAACTGACACATGGGAACCACTAGAAGAAGGCCTTCTTCCTTTGGAGACTACTCGCCATGTTTCAATGATCACAATTACCTTGTCAAAGAAAGAATTGGATACGTCATCCACAGGATACCAACCTCCTCTTCCAGTTGATCAAGTAAAACCTTTAAATGAATATGATGAGGAAGGAGAAGGCTCACCAAGGATACGAGGAAGAGGGCGTGGTCGTGGAAGGGGCAGGGGTAGAGGATTTTACAATGGGGGTATGGAATATGGTGATGGTTGGGATGGTGGACGTGGCTATGGTGGAAGAGGGCGTGGTCGTGCAAGGGGGCATGCTTTTCGGGGACGAGGACGAGGACGAGGCTATGGTGTGCAGCCAGTTGGTTACTATGACTATGGTGAATATGATGCTCCACCTCCACCACGTGGCCGTGGCCGTGGAAGGGGAAGAGGCCGAGGCCGTGGCCGGGGAAGGGACCAGGTACCAGCTGCTTGA
Predicted protein sequences of Glyma04g39480
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma04g39480.2 sequence type=predicted peptide gene model=Glyma04g39480 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MDRYQRVEKPKAESPINENEIRVTSQGRTRNYITYATTLLQEKGSSEIVLKAMGRAINKTVMIAELIKRRIVGLHQNTQIGSTDITDTWEPLEEGLLPLETTRHVSMITITLSKKELDTSSTGYQPPLPVDQVKPLNEYDEEGEGSPRIRGRGRGRGRGRGRGFYNGGMEYGDGWDGGRGYGGRGRGRARGHAFRGRGRGRGYGVQPVGYYDYGEYDAPPPPRGRGRGRGRGRGRGRGRDQVPAA*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
