Glyma04g39470 - SoyBase

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Report for Sequence Feature Glyma04g39470

Feature Type:	gene_model
Chromosome:	Gm04
Start:	45656880
stop:	45660390
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g39470

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G09850	AT	Annotation by Michelle Graham. TAIR10: Transcription elongation factor (TFIIS) family protein \| chr5:3063488-3065221 REVERSE LENGTH=353	SoyBase	E_val: 7.00E-100	ISS
GO:0006351	GO-bp	Annotation by Michelle Graham. GO Biological Process: transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0016021	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
PTHR15141	Panther	ELONGIN A-RELATED	JGI		ISS
PTHR15141:SF34	Panther	TRANSCRIPTION ELONGATION FACTOR-RELATED	JGI		ISS
PF08711	PFAM	TFIIS helical bundle-like domain	JGI		ISS
UniRef100_F4KFC7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Probable mediator of RNA polymerase II transcription subunit 26c n=1 Tax=Arabidopsis thaliana RepID=MD26C_ARATH	SoyBase	E_val: 3.00E-97	ISS
UniRef100_I1JY62	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JY62_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma04g39470

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g39470

Paralog	Evidence	Comments
Glyma06g15430	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g39470 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g216700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g39470

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma04g39470

Limit To All Plant Sequences

>Glyma04g39470.2   sequence type=transcript   gene model=Glyma04g39470   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AGTTTGGCACCAAAACCAAACGCGTAAGGTCAAGGTGGTGGTGTTAGTCACCCACAGGTCTACACACGCTGCAACCATACCTTTACCCTACCAATACCAATACCATACCACTGTTGTATATTGTAGTTGTACACACACATACACCACCTTCCAACCAAATCCCAATTAACAAAACTAATCTGCAATCAATTAAAATTAATTAAGGGTTTTCTTCTGGAATATACTCCCTCCTCATTCCCCTCTCTACTCTCCATTATCCACATCTTACAACTTGAAACTCTTCCGCCATACCTCACCTCAGATCTACGTCGTCGTCGTCGATCTTCTGTTCAGAATAATAATTTTAGATCCCTGATGCAACAGAACAAGGAATCTTCTTAGATTCTTTTTCTGGAAGAAAGAGAAAACAGAAGAAGAAACTCTTCTTCTTTAGACCCGTCTTATATATTTATATACAGTCTCTGATTGATCGGTTTTTTCGGAACCTCTATTTTCACTCAAATCCACGCGCGCTCTTCGGGCATGGATTTGGACGATTTCCGATCCATATTGGACACAGCGGGCGTCGACGTGTGGATGTTCATCGACGCCGCAATCGCCGTTGCCTCCTCGGATTCCGCCGGAGATCTGAAGCGCCGCCGCGATGGCATCGTCGAGCGCCTCTACGCCGCCACGGCGGCTCCTCCGTGGTGCCGGAATTGCGACGAGGGCGGCCACCGCCTCAACGGCCACAGAATCAAGAAACAGAGTCGCCATAGTCCCAGCCCCGAACGGCAACCGCACCGCTCCACCGCCACAGCTTCCCCGGCAACGCCGCAGTCTCTCGACAACGGCGAAGACGAAGACAACGACGAGGATTTAGATCCTTATGGTGGCTTGTTGGACGACGAACAGAAGAAGATTCTGGAGATTAAAGAACAACTGGAGGAGCCTGATCAGTCTGAAGATTCTTTGGTGGAGCTGCTGCAAAGCCTCGCGGACATGGATATAACATTCCAAGGGTTAAAGGAGACTGACATCGGGAGGCACGTGAATCGGTTACGGAAGCATCCTTCAAACGACCTTCGGCGATTGGTGAAGTTGCTTGTCAGGAAGTGGAAGGAAATTGTGGATGAGTGGGTGAAGTTGAATCCACGGGGAGGAAGCAACACTCTGATGGCTGATGGAGACTCGTCGCCTGTGCAGAAAACCACTCAAAATGGGCATCATCAGCAGATTCCTGATTTTGCATACTCGCCCAATCCACACAATGGGAGCTCAGGGTCTGACCGTAACAACTCAGAAGCAGAACGCAAACCCAAAGTAGTTCCCCGCAGTGAACCTAGGCCAAAACACGCGCCATCACCGTCAGTTTCAACCCCTGCTTCCGCTACTCAAAACAGACAGAGGGAGAGCAGTTTTGACGCGGAGAGGCTTGCTTCGGCGAGAAGGAGGCTTCAAGAGAACTACAAAGAGGCTGAAATTGCCAAAAGGCAAAGAACGATTCAGGTGATGGACATCCATGACTTACCAAAGGCAAAACCCAAGAATAATGCCTTCTTTGGGAAGAACAAAGGTGGTGGTGGTGGTGGTTCTCAGGGAAGGCACTGGTGATGGTGATGATGATGATGCATGTTTTTCCATTGTTGGTGCCATTCTGCGTGTAAAAAAGCCTTGTGGGAGGGGTTCGGATAAGTCAGTCCCAAACCCTGCTTCATCATCCCTGTCGAATTTTCCTCCATAAACCTTCTTTTTTTCCTTGTGGTTTTTATTTAAATTAATAATAACCGAAGAAAAGAACTCAATATAATTTTTCTTTTCTTCTTGAAAGGGTACCTATCGAAACCGCGTTTGTCGGTTTGTTGAGGAGCACGTGATTTCAGGGAACAGGGTAGAGGGGATGGGATGGAAGGGGTAGGGCTAAAAAAGGTTTTTCCTTATATAAAACATCTTTTTTTTTAGGGTGAAGTTTGAATTCTGGTATATTAGGTTTAATGGATGCATTACTCCATTAATTGCATTTTAGCCTTTTGCTTAAAGAAAAGCAACAAACGGAAGTCAAGAAGTGATCACAACTTCATGATTTTGCTCCGGTTGTGTGGGTGGGGATTAATGACTGGGGCCTTTGGTAAGCTTAGGAAGTTGACACGTTCACAAAACTTGTCCTTGCTTAATGAGCTCGAATCCTTTGCCGTAAAAAAAAAAAAAGTGTTTTATTTGGTGCAGCAAGCCATTTACCTCCCCTTTGTCTAATAATTGAAACACAACAAATGGACAAAAGTCTTAAGTTTTACGGGGGTACTTGTGTCAAAAGAAAACTCTTGTAATTGCCAAATTGTTTGTCAGGCACTAGTTAGTAATACAAGTTAGTTACGTAACAGTTCCTTATAACACTAAATCAGCTACATACCTTGTAGTTTTATTTTATACTTTTAATGTGGGAAAGTTGAATTTGGTGTGGAGGTACGGGTTAAGTAATTTTGTATGACCAATAAATCATTTACTGCATTAAATATTGCACTTTTACCCAAAAAAAATGTCTTAAAGTATTTTTTTTTTAATTATGTCCTCCTTTTGGGCTGACTGGTCATTTTGGGCTTCTTGAATGTGTTACACTTTCATTTTCAGTAATGTTTTTAAAAAATGATTAAATGTTATTTTTTATCCTTTATA

Coding sequences of Glyma04g39470

Limit To All Plant Sequences

>Glyma04g39470.1   sequence type=CDS   gene model=Glyma04g39470   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATTTGGACGATTTCCGATCCATATTGGACACAGCGGGCGTCGACGTGTGGATGTTCATCGACGCCGCAATCGCCGTTGCCTCCTCGGATTCCGCCGGAGATCTGAAGCGCCGCCGCGATGGCATCGTCGAGCGCCTCTACGCCGCCACGGCGGCTCCTCCGTGGTGCCGGAATTGCGACGAGGGCGGCCACCGCCTCAACGGCCACAGAATCAAGAAACAGAGTCGCCATAGTCCCAGCCCCGAACGGCAACCGCACCGCTCCACCGCCACAGCTTCCCCGGCAACGCCGCAGTCTCTCGACAACGGCGAAGACGAAGACAACGACGAGGATTTAGATCCTTATGGTGGCTTGTTGGACGACGAACAGAAGAAGATTCTGGAGATTAAAGAACAACTGGAGGAGCCTGATCAGTCTGAAGATTCTTTGGTGGAGCTGCTGCAAAGCCTCGCGGACATGGATATAACATTCCAAGGGTTAAAGGAGACTGACATCGGGAGGCACGTGAATCGGTTACGGAAGCATCCTTCAAACGACCTTCGGCGATTGGTGAAGTTGCTTGTCAGGAAGTGGAAGGAAATTGTGGATGAGTGGGTGAAGTTGAATCCACGGGGAGGAAGCAACACTCTGATGGCTGATGGAGACTCGTCGCCTGTGCAGAAAACCACTCAAAATGGGCATCATCAGCAGATTCCTGATTTTGCATACTCGCCCAATCCACACAATGGGAGCTCAGGGTCTGACCGTAACAACTCAGAAGCAGAACGCAAACCCAAAGTAGTTCCCCGCAGTGAACCTAGGCCAAAACACGCGCCATCACCGTCAGTTTCAACCCCTGCTTCCGCTACTCAAAACAGACAGAGGGAGAGCAGTTTTGACGCGGAGAGGCTTGCTTCGGCGAGAAGGAGGCTTCAAGAGAACTACAAAGAGGCTGAAATTGGTGGAATTTTCATTTCTATAAAATTTTCATTTTTGATGATACATCTCTCTCTCTCTCTATATATATATATAACTGACGGGTTATTTGTGGTGTTTGTGCGGTGTATTTATAGCCAAAAGGCAAAGAACGATTCAGGTGATGGACATCCATGA

>Glyma04g39470.2   sequence type=CDS   gene model=Glyma04g39470   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATTTGGACGATTTCCGATCCATATTGGACACAGCGGGCGTCGACGTGTGGATGTTCATCGACGCCGCAATCGCCGTTGCCTCCTCGGATTCCGCCGGAGATCTGAAGCGCCGCCGCGATGGCATCGTCGAGCGCCTCTACGCCGCCACGGCGGCTCCTCCGTGGTGCCGGAATTGCGACGAGGGCGGCCACCGCCTCAACGGCCACAGAATCAAGAAACAGAGTCGCCATAGTCCCAGCCCCGAACGGCAACCGCACCGCTCCACCGCCACAGCTTCCCCGGCAACGCCGCAGTCTCTCGACAACGGCGAAGACGAAGACAACGACGAGGATTTAGATCCTTATGGTGGCTTGTTGGACGACGAACAGAAGAAGATTCTGGAGATTAAAGAACAACTGGAGGAGCCTGATCAGTCTGAAGATTCTTTGGTGGAGCTGCTGCAAAGCCTCGCGGACATGGATATAACATTCCAAGGGTTAAAGGAGACTGACATCGGGAGGCACGTGAATCGGTTACGGAAGCATCCTTCAAACGACCTTCGGCGATTGGTGAAGTTGCTTGTCAGGAAGTGGAAGGAAATTGTGGATGAGTGGGTGAAGTTGAATCCACGGGGAGGAAGCAACACTCTGATGGCTGATGGAGACTCGTCGCCTGTGCAGAAAACCACTCAAAATGGGCATCATCAGCAGATTCCTGATTTTGCATACTCGCCCAATCCACACAATGGGAGCTCAGGGTCTGACCGTAACAACTCAGAAGCAGAACGCAAACCCAAAGTAGTTCCCCGCAGTGAACCTAGGCCAAAACACGCGCCATCACCGTCAGTTTCAACCCCTGCTTCCGCTACTCAAAACAGACAGAGGGAGAGCAGTTTTGACGCGGAGAGGCTTGCTTCGGCGAGAAGGAGGCTTCAAGAGAACTACAAAGAGGCTGAAATTGCCAAAAGGCAAAGAACGATTCAGGTGATGGACATCCATGACTTACCAAAGGCAAAACCCAAGAATAATGCCTTCTTTGGGAAGAACAAAGGTGGTGGTGGTGGTGGTTCTCAGGGAAGGCACTGGTGA

Predicted protein sequences of Glyma04g39470

Limit To All Plant Sequences

>Glyma04g39470.1   sequence type=predicted peptide   gene model=Glyma04g39470   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDLDDFRSILDTAGVDVWMFIDAAIAVASSDSAGDLKRRRDGIVERLYAATAAPPWCRNCDEGGHRLNGHRIKKQSRHSPSPERQPHRSTATASPATPQSLDNGEDEDNDEDLDPYGGLLDDEQKKILEIKEQLEEPDQSEDSLVELLQSLADMDITFQGLKETDIGRHVNRLRKHPSNDLRRLVKLLVRKWKEIVDEWVKLNPRGGSNTLMADGDSSPVQKTTQNGHHQQIPDFAYSPNPHNGSSGSDRNNSEAERKPKVVPRSEPRPKHAPSPSVSTPASATQNRQRESSFDAERLASARRRLQENYKEAEIGGIFISIKFSFLMIHLSLSLYIYITDGLFVVFVRCIYSQKAKNDSGDGHP*

>Glyma04g39470.2   sequence type=predicted peptide   gene model=Glyma04g39470   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDLDDFRSILDTAGVDVWMFIDAAIAVASSDSAGDLKRRRDGIVERLYAATAAPPWCRNCDEGGHRLNGHRIKKQSRHSPSPERQPHRSTATASPATPQSLDNGEDEDNDEDLDPYGGLLDDEQKKILEIKEQLEEPDQSEDSLVELLQSLADMDITFQGLKETDIGRHVNRLRKHPSNDLRRLVKLLVRKWKEIVDEWVKLNPRGGSNTLMADGDSSPVQKTTQNGHHQQIPDFAYSPNPHNGSSGSDRNNSEAERKPKVVPRSEPRPKHAPSPSVSTPASATQNRQRESSFDAERLASARRRLQENYKEAEIAKRQRTIQVMDIHDLPKAKPKNNAFFGKNKGGGGGGSQGRHW*

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