Glyma04g39400 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma04g39400

Feature Type:	gene_model
Chromosome:	Gm04
Start:	45615324
stop:	45617829
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g39400

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G76880	AT	Annotation by Michelle Graham. TAIR10: Duplicated homeodomain-like superfamily protein \| chr1:28865594-28867931 FORWARD LENGTH=603	SoyBase	E_val: 5.00E-110	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
KOG4282	KOG	Transcription factor GT-2 and related proteins, contains trihelix DNA-binding/SANT domain	JGI		ISS
PF10545	PFAM	Alcohol dehydrogenase transcription factor Myb/SANT-like	JGI		ISS
UniRef100_B0EW03	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Trihelix transcription factor n=1 Tax=Glycine max RepID=B0EW03_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_B0EW03	UniRef	Annotation by Michelle Graham. Best UniRef hit: Trihelix transcription factor n=1 Tax=Glycine max RepID=B0EW03_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma04g39400

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g39400

Paralog	Evidence	Comments
Glyma06g15500	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g39400 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g216100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g39400

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma04g39400

Limit To All Plant Sequences

>Glyma04g39400.2   sequence type=CDS   gene model=Glyma04g39400   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCTGGAAATCTCAACTTCACAGGAAACCCCGCTAGAGAACGCGGACGGCGGCTCCGCGGCGGTCTCGGACGGGTCGAAAGCCGAGCACGGCGAGGACGATGACCGGAATCCCGCCGCGAACCGGTGGCCGAGAGAGGAGACAATGGCTTTGCTCAATATAAGGTCCGAAATGGACGTTGCTTTCAAAGACGCAAACCTCAAAGCCCCTCTCTGGGAACAAGTCTCAAGGAAATTATCGGAGCTAGGTTATAATAGGAGTGCGAAGAAGTGCAAGGAGAAATTCGAGAACATTTACAAGTACCATAGGAGAACTAAAGAAGGTCGTTTTGGAAAATCAAACGGTGCAAAAACTTACCGATTTTTCGAGCAATTGGAAGCTTTAGACGGAAACCACTCACTTCTTCCTCCGACAACAACCGACAACAACAACAACAACAACAACGTTGGTGATGATGTTGTCCTGAACGCGGTTCCGTGTTCGGTTAGTGCGGCGGCGCACGAGCACTCGAGTTCGACGACGTCGTGTTCGGGGAAGAAGAAGAGGAAGCTGACGCAGTTTCTGGAGGGGTTGATGAGGGAAGTGATAGAGAAGCAAGAGACGCTGCAGAGGAAGTTCGTGGAAGTGTTGGACAAGTGTGAAAAAGATCGAATGGCGAGGGAGGAAGCGTGGAAGAAGGAGGAACTCGAAAGGATCAAGAAAGAACGCGAGCTTCTGGCTCAGGAAAGATCAATTGCTGCTGCCAAAGACGAAGCTGTTCTTGCTTTTCTTAGAAAGTTTGCAGAAGCAGAAGACACGGTGCAGTTACTCGAGAAAATTCAGGTTCAAAACGACAAACAGAAAAACATGAAACAAAATGGCGGTAATGATAATGCTAATGGAGGTGGTGGTGTCGCAGTTGTCACTGATATGGATAAACAAGAATGTGGAAATACTAATGTTCGTGTTAGTGTTGGGAATTTTGTGCACATGAGTAGTTCTCGTTGGCCGAAGGATGAAGTGGAGGCATTGATAAGGTTAAGGACTCAAATTGATGTGCAGGCACAATGGAATAGTAATAACAATAACAATAATGGGTCTAAAGGGCCTCTTTGGGAGGAGATATCTTCAGCTATGAAGAGCCTTGGTTATGATCGAAGTGCAAAGAGGTGTAAAGAGAAATGGGAGAACATAAACAAGTACTTCAAGAGGATAAAGGAGAAGAGCAAGAGGAAGCCTCAGGATTCCAAGACGTGTCCTTATTATCATCACCTTGAGGCTTTGTACAGTAAGAAGCCTAAGAAGGTGGATCTTGGGAACGAGTTGAAGCCTGAGGAGCTGTTGATGCATATCATGGTGAGTCAAAGTCAAGAACAGCAACAGCAACAAGAGATGCAGACTCAGACTCAGTCACCATCTGAAGATGCTGAGAGAGATCAGAATCAGGGAGATAATGAAGATCAAAGTGAGTATCAGAATCAGATGGTTGATAATAATAGTCCTTCCATTGCAATTATGAGTTAA

Predicted protein sequences of Glyma04g39400

Limit To All Plant Sequences

>Glyma04g39400.2   sequence type=predicted peptide   gene model=Glyma04g39400   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLEISTSQETPLENADGGSAAVSDGSKAEHGEDDDRNPAANRWPREETMALLNIRSEMDVAFKDANLKAPLWEQVSRKLSELGYNRSAKKCKEKFENIYKYHRRTKEGRFGKSNGAKTYRFFEQLEALDGNHSLLPPTTTDNNNNNNNVGDDVVLNAVPCSVSAAAHEHSSSTTSCSGKKKRKLTQFLEGLMREVIEKQETLQRKFVEVLDKCEKDRMAREEAWKKEELERIKKERELLAQERSIAAAKDEAVLAFLRKFAEAEDTVQLLEKIQVQNDKQKNMKQNGGNDNANGGGGVAVVTDMDKQECGNTNVRVSVGNFVHMSSSRWPKDEVEALIRLRTQIDVQAQWNSNNNNNNGSKGPLWEEISSAMKSLGYDRSAKRCKEKWENINKYFKRIKEKSKRKPQDSKTCPYYHHLEALYSKKPKKVDLGNELKPEELLMHIMVSQSQEQQQQQEMQTQTQSPSEDAERDQNQGDNEDQSEYQNQMVDNNSPSIAIMS*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain