Glyma04g39370 - SoyBase

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Report for Sequence Feature Glyma04g39370

Feature Type:	gene_model
Chromosome:	Gm04
Start:	45580348
stop:	45582110
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g39370

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G64040	AT	Annotation by Michelle Graham. TAIR10: photosystem I reaction center subunit PSI-N, chloroplast, putative / PSI-N, putative (PSAN) \| chr5:25628690-25629409 REVERSE LENGTH=181	SoyBase	E_val: 4.00E-68	ISS
GO:0006098	GO-bp	Annotation by Michelle Graham. GO Biological Process: pentose-phosphate shunt	SoyBase	N/A	ISS
GO:0009773	GO-bp	Annotation by Michelle Graham. GO Biological Process: photosynthetic electron transport in photosystem I	SoyBase	N/A	ISS
GO:0015979	GO-bp	Annotation by Michelle Graham. GO Biological Process: photosynthesis	SoyBase	N/A	ISS
GO:0019344	GO-bp	Annotation by Michelle Graham. GO Biological Process: cysteine biosynthetic process	SoyBase	N/A	ISS
GO:0019684	GO-bp	Annotation by Michelle Graham. GO Biological Process: photosynthesis, light reaction	SoyBase	N/A	ISS
GO:0035304	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of protein dephosphorylation	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0009522	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: photosystem I	SoyBase	N/A	ISS
GO:0009534	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid	SoyBase	N/A	ISS
GO:0009535	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid membrane	SoyBase	N/A	ISS
GO:0009543	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid lumen	SoyBase	N/A	ISS
GO:0009579	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: thylakoid	SoyBase	N/A	ISS
GO:0030093	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast photosystem I	SoyBase	N/A	ISS
GO:0042651	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: thylakoid membrane	SoyBase	N/A	ISS
GO:0005516	GO-mf	Annotation by Michelle Graham. GO Molecular Function: calmodulin binding	SoyBase	N/A	ISS
PF05479	PFAM	Photosystem I reaction centre subunit N (PSAN or PSI-N)	JGI		ISS
UniRef100_F4KC80	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Photosystem I reaction center subunit N n=1 Tax=Arabidopsis thaliana RepID=F4KC80_ARATH	SoyBase	E_val: 2.00E-65	ISS
UniRef100_I1JY50	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JY50_SOYBN	SoyBase	E_val: 9.00E-132	ISS

Expression Patterns of Glyma04g39370

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma04g39370 not represented in the dataset	Glyma04g39370 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g39370

Paralog	Evidence	Comments
Glyma06g15540	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g39370 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g215800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g39370

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma04g39370

Limit To All Plant Sequences

>Glyma04g39370.4   sequence type=transcript   gene model=Glyma04g39370   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GCATGAAGAGCAAGATTTGCCAATAGGAGCGAGGCAATCTCACCTTATCCACACGCCCACCACAACCTTAAATTACATCCATCATCCATAGCAACAAGCCAAAGAAGAGAAAATAATAATATGAATAACAACCCACAAAACTTGGGTCTTGCAAATTAAGTTCATTTTCCTCCCTTTCACTCTCGTAGACATCACAAACCTTCCCTCCATTCATCCCACGCATGGCTGCCATGAACTCTAGCGTATTGGCCTGTAGCTATGCCATATCAGGTGCAGCGTGTTCGGAGCTCAATGGGAAGGTCACTTCCGTGGCCTATGTTGCATGCTCTGGCTACAAGTTGCCATTGATCAAAGCTGAGGCCAGAGTTCCTAAAGCCAAAGAATCTGAAGGAGGAAGGAGAGGTGCCCTTGTTCTCTTGGCAGCTACCCTTTTCACCTCTGCAGCTTCCAATTCTTCTGCCAATGCTGGGATCATTGAAGATTACCTTGAGAGGAGCAAGGCCAACAAGGAATTGAATGACAAGAAGAGGTTAGCTACTACTGGAGCAAACTTTGCAAGAGCATACACCGTGGAATTCGGTAGTTGCAAGTTCCCTGAGAACTTCACTGGTTGCCAAGATCTTGCCAAACAAAAGGTCTAGCTCCACCTCTGATATTTCACTTGCTTTCCCAAATCCTAACTCTTGCACTTGCCTTTTTCTAATTCAGTAATTCTCATGCTGTTGTTCTTTTTTCTTCTTTTTTTTTTCTCCTTTTCGTTTCTGGGTTTTTATCTACGCAGAAAGTGCCATTCCTTAGTGACGACTTGGAGCTTGAATGTGAAGGAAAGGACAAATACAAGTGCGGTTCTAATGTTTTCTGGAAATGGTGAAAGGAGGCAACATTTTATGCCTAACTGCGAACTTTTCGCCTTGCAATGTACCTAACTGCTTGAATATATATCATATTTTTCTGCATTGATTTATTATTATATTGTTGCTGTTGGATTTTATTTGTTGAAAAAAATGTGTGCATTAGGCGGCTATTTACTCTAGATTCGTTGAAATTACATTTTGCGATATGTTTTGATTTCCCAAATTCATGTTAGCTTTTACATCATTGCAAAATCATAGAATTGGTTGATAATCTCTTTGCGTAGAAAGAAATTAGTCTTCAATTATCGGTCAGGCCAATCAGTTTTTCAAGCATCCATGCATTCAGCCTGTTTATAC

>Glyma04g39370.5   sequence type=transcript   gene model=Glyma04g39370   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GCATGAAGAGCAAGATTTGCCAATAGGAGCGAGGCAATCTCACCTTATCCACACGCCCACCACAACCTTAAATTACATCCATCATCCATAGCAACAAGCCAAAGAAGAGAAAATAATAATATGAATAACAACCCACAAAACTTGGGTCTTGCAAATTAAGTTCATTTTCCTCCCTTTCACTCTCGTAGACATCACAAACCTTCCCTCCATTCATCCCACGCATGGCTGCCATGAACTCTAGCGTATTGGCCTGTAGCTATGCCATATCAGGTGCAGCGTGTTCGGAGCTCAATGGGAAGGTCACTTCCGTGGCCTATGTTGCATGCTCTGGCTACAAGTTGCCATTGATCAAAGCTGAGGCCAGAGTTCCTAAAGCCAAAGAATCTGAAGGAGGAAGGAGAGGTGCCCTTGTTCTCTTGGCAGCTACCCTTTTCACCTCTGCAGCTTCCAATTCTTCTGCCAATGCTGGGATCATTGAAGATTACCTTGAGAGGAGCAAGGCCAACAAGGAATTGAATGACAAGAAGAGGTTAGCTACTACTGGAGCAAACTTTGCAAGAGCATACACCGTGGAATTCGGTAGTTGCAAGTTCCCTGAGAACTTCACTGGTTGCCAAGATCTTGCCAAACAAAAGAAAGTGCCATTCCTTAGTGACGACTTGGAGCTTGAATGTGAAGGAAAGGACAAATACAAGTGCGGTTCTAATGTTTTCTGGAAATGGTGAAAGGAGGCAACATTTTATGCCTAACTGCGAACTTTTCGCCTTGCAATGTACCTAACTGCTTGAATATATATCATATTTTTCTGCATTGATTTATTATTATATTGTTGCTGTTGGATTTTATTTGTTGAAAAAAATGTGTGCATTAGGCGGCTATTTACTCTAGATTCGTTGAAATTACATTTTGCGATATGTTTTGATTTCCCAAATTCATGTTAGCTTTTACATCATTGCAAAATCATAGAATTGGTTGATAATCTCTTTGCGTAGAAAGAAATTAGTCTTCAATTATCGGTCAGGCCAATCAGTTTTTCAAGCATCCATGCATTCAGCCTGTTTATAC

>Glyma04g39370.6   sequence type=transcript   gene model=Glyma04g39370   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GCATGAAGAGCAAGATTTGCCAATAGGAGCGAGGCAATCTCACCTTATCCACACGCCCACCACAACCTTAAATTACATCCATCATCCATAGCAACAAGCCAAAGAAGAGAAAATAATAATATGAATAACAACCCACAAAACTTGGGTCTTGCAAATTAAGTTCATTTTCCTCCCTTTCACTCTCGTAGACATCACAAACCTTCCCTCCATTCATCCCACGCATGGCTGCCATGAACTCTAGCGTATTGGCCTGTAGCTATGCCATATCAGGTGCAGCGTGTTCGGAGCTCAATGGGAAGGTCACTTCCGTGGCCTATGTTGCATGCTCTGGCTACAAGTTGCCATTGATCAAAGCTGAGGCCAGAGTTCCTAAAGCCAAAGAATCTGAAGGAGGAAGGAGAGGTGCCCTTGTTCTCTTGGCAGCTACCCTTTTCACCTCTGCAGCTTCCAATTCTTCTGCCAATGCTGGGATCATTGAAGATTACCTTGAGAGGAGCAAGGCCAACAAGATAAGTTTATGTGCTATAGGAATTGAATGACAAGAAGAGGTTAGCTACTACTGGAGCAAACTTTGCAAGAGCATACACCGTGGAATTCGGTAGTTGCAAGTTCCCTGAGAACTTCACTGGTTGCCAAGATCTTGCCAAACAAAAGAAAGTGCCATTCCTTAGTGACGACTTGGAGCTTGAATGTGAAGGAAAGGACAAATACAAGTGCGGTTCTAATGTTTTCTGGAAATGGTGAAAGGAGGCAACATTTTATGCCTAACTGCGAACTTTTCGCCTTGCAATGTACCTAACTGCTTGAATATATATCATATTTTTCTGCATTGATTTATTATTATATTGTTGCTGTTGGATTTTATTTGTTGAAAAAAATGTGTGCATTAGGCGGCTATTTACTCTAGATTCGTTGAAATTACATTTTGCGATATGTTTTGATTTCCCAAATTCATGTTAGCTTTTACATCATTGCAAAATCATAGAATTGGTTGATAATCTCTTTGCGTAGAAAGAAATTAGTCTTCAATTATCGGTCAGGCCAATCAGTTTTTCAAGCATCCATGCATTCAGCCTGTTTATAC

>Glyma04g39370.7   sequence type=transcript   gene model=Glyma04g39370   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GCATGAAGAGCAAGATTTGCCAATAGGAGCGAGGCAATCTCACCTTATCCACACGCCCACCACAACCTTAAATTACATCCATCATCCATAGCAACAAGCCAAAGAAGAGAAAATAATAATATGAATAACAACCCACAAAACTTGGGTCTTGCAAATTAAGTTCATTTTCCTCCCTTTCACTCTCGTAGACATCACAAACCTTCCCTCCATTCATCCCACGCATGGCTGCCATGAACTCTAGCGTATTGGCCTGTAGCTATGCCATATCAGGTGCAGCGTGTTCGGAGCTCAATGGGAAGGTCACTTCCGTGGCCTATGTTGCATGCTCTGGCTACAAGTTGCCATTGATCAAAGCTGAGGCCAGAGTTCCTAAAGCCAAAGAATCTGAAGGAGGAAGGAGAGGTGCCCTTGTTCTCTTGGCAGCTACCCTTTTCACCTCTGCAGCTTCCAATTCTTCTGCCAATGCTGGGATCATTGAAGATTACCTTGAGAGGAGCAAGGCCAACAAGATAAGTTTATGTGCTATAGGAATTGAATGACAAGAAGAGGTTAGCTACTACTGGAGCAAACTTTGCAAGAGCATACACCGTGGAATTCGGTAGTTGCAAGTTCCCTGAGAACTTCACTGGTTGCCAAGATCTTGCCAAACAAAAGGTCTAGCTCCACCTCTGATATTTCACTTGCTTTCCCAAATCCTAACTCTTGCACTTGCCTTTTTCTAATTCAGTAATTCTCATGCTGTTGTTCTTTTTTCTTCTTTTTTTTTTCTCCTTTTCGTTTCTGGGTTTTTATCTACGCAGAAAGTGCCATTCCTTAGTGACGACTTGGAGCTTGAATGTGAAGGAAAGGACAAATACAAGTGCGGTTCTAATGTTTTCTGGAAATGGTGAAAGGAGGCAACATTTTATGCCTAACTGCGAACTTTTCGCCTTGCAATGTACCTAACTGCTTGAATATATATCATATTTTTCTGCATTGATTTATTATTATATTGTTGCTGTTGGATTTTATTTGTTGAAAAAAATGTGTGCATTAGGCGGCTATTTACTCTAGATTCGTTGAAATTACATTTTGCGATATGTTTTGATTTCCCAAATTCATGTTAGCTTTTACATCATTGCAAAATCATAGAATTGGTTGATAATCTCTTTGCGTAGAAAGAAATTAGTCTTCAATTATCGGTCAGGCCAATCAGTTTTTCAAGCATCCATGCATTCAGCCTGTTTATAC

Coding sequences of Glyma04g39370

Limit To All Plant Sequences

>Glyma04g39370.1   sequence type=CDS   gene model=Glyma04g39370   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTGCCATGAACTCTAGCGTATTGGCCTGTAGCTATGCCATATCAGGTGCAGCGTGTTCGGAGCTCAATGGGAAGGTCACTTCCGTGGCCTATGTTGCATGCTCTGGCTACAAGTTGCCATTGATCAAAGCTGAGGCCAGAGTTCCTAAAGCCAAAGAATCTGAAGGAGGAAGGAGAGGTGCCCTTGTTCTCTTGGCAGCTACCCTTTTCACCTCTGCAGCTTCCAATTCTTCTGCCAATGCTGGGATCATTGAAGATTACCTTGAGAGGAGCAAGGCCAACAAGGAATTGAATGACAAGAAGAGGTTAGCTACTACTGGAGCAAACTTTGCAAGAGCATACACCGTGGAATTCGGTAGTTGCAAGTTCCCTGAGAACTTCACTGGTTGCCAAGATCTTGCCAAACAAAAGTGCCATTCCTTAGTGACGACTTGGAGCTTGAATGTGAAGGAAAGGACAAATACAAGTGCGGTTCTAATGTTTTCTGGAAATGGTGAAAGGAGGCAACATTTTATGCCTAACTGCGAACTTTTCGCCTTGCAATGTACCTAA

>Glyma04g39370.4   sequence type=CDS   gene model=Glyma04g39370   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTGCCATGAACTCTAGCGTATTGGCCTGTAGCTATGCCATATCAGGTGCAGCGTGTTCGGAGCTCAATGGGAAGGTCACTTCCGTGGCCTATGTTGCATGCTCTGGCTACAAGTTGCCATTGATCAAAGCTGAGGCCAGAGTTCCTAAAGCCAAAGAATCTGAAGGAGGAAGGAGAGGTGCCCTTGTTCTCTTGGCAGCTACCCTTTTCACCTCTGCAGCTTCCAATTCTTCTGCCAATGCTGGGATCATTGAAGATTACCTTGAGAGGAGCAAGGCCAACAAGGAATTGAATGACAAGAAGAGGTTAGCTACTACTGGAGCAAACTTTGCAAGAGCATACACCGTGGAATTCGGTAGTTGCAAGTTCCCTGAGAACTTCACTGGTTGCCAAGATCTTGCCAAACAAAAGGTCTAG

>Glyma04g39370.5   sequence type=CDS   gene model=Glyma04g39370   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTGCCATGAACTCTAGCGTATTGGCCTGTAGCTATGCCATATCAGGTGCAGCGTGTTCGGAGCTCAATGGGAAGGTCACTTCCGTGGCCTATGTTGCATGCTCTGGCTACAAGTTGCCATTGATCAAAGCTGAGGCCAGAGTTCCTAAAGCCAAAGAATCTGAAGGAGGAAGGAGAGGTGCCCTTGTTCTCTTGGCAGCTACCCTTTTCACCTCTGCAGCTTCCAATTCTTCTGCCAATGCTGGGATCATTGAAGATTACCTTGAGAGGAGCAAGGCCAACAAGGAATTGAATGACAAGAAGAGGTTAGCTACTACTGGAGCAAACTTTGCAAGAGCATACACCGTGGAATTCGGTAGTTGCAAGTTCCCTGAGAACTTCACTGGTTGCCAAGATCTTGCCAAACAAAAGAAAGTGCCATTCCTTAGTGACGACTTGGAGCTTGAATGTGAAGGAAAGGACAAATACAAGTGCGGTTCTAATGTTTTCTGGAAATGGTGA

>Glyma04g39370.6   sequence type=CDS   gene model=Glyma04g39370   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTGCCATGAACTCTAGCGTATTGGCCTGTAGCTATGCCATATCAGGTGCAGCGTGTTCGGAGCTCAATGGGAAGGTCACTTCCGTGGCCTATGTTGCATGCTCTGGCTACAAGTTGCCATTGATCAAAGCTGAGGCCAGAGTTCCTAAAGCCAAAGAATCTGAAGGAGGAAGGAGAGGTGCCCTTGTTCTCTTGGCAGCTACCCTTTTCACCTCTGCAGCTTCCAATTCTTCTGCCAATGCTGGGATCATTGAAGATTACCTTGAGAGGAGCAAGGCCAACAAGATAAGTTTATGTGCTATAGGAATTGAATGA

>Glyma04g39370.7   sequence type=CDS   gene model=Glyma04g39370   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTGCCATGAACTCTAGCGTATTGGCCTGTAGCTATGCCATATCAGGTGCAGCGTGTTCGGAGCTCAATGGGAAGGTCACTTCCGTGGCCTATGTTGCATGCTCTGGCTACAAGTTGCCATTGATCAAAGCTGAGGCCAGAGTTCCTAAAGCCAAAGAATCTGAAGGAGGAAGGAGAGGTGCCCTTGTTCTCTTGGCAGCTACCCTTTTCACCTCTGCAGCTTCCAATTCTTCTGCCAATGCTGGGATCATTGAAGATTACCTTGAGAGGAGCAAGGCCAACAAGATAAGTTTATGTGCTATAGGAATTGAATGA

Predicted protein sequences of Glyma04g39370

Limit To All Plant Sequences

>Glyma04g39370.1   sequence type=predicted peptide   gene model=Glyma04g39370   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAAMNSSVLACSYAISGAACSELNGKVTSVAYVACSGYKLPLIKAEARVPKAKESEGGRRGALVLLAATLFTSAASNSSANAGIIEDYLERSKANKELNDKKRLATTGANFARAYTVEFGSCKFPENFTGCQDLAKQKCHSLVTTWSLNVKERTNTSAVLMFSGNGERRQHFMPNCELFALQCT*

>Glyma04g39370.4   sequence type=predicted peptide   gene model=Glyma04g39370   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAAMNSSVLACSYAISGAACSELNGKVTSVAYVACSGYKLPLIKAEARVPKAKESEGGRRGALVLLAATLFTSAASNSSANAGIIEDYLERSKANKELNDKKRLATTGANFARAYTVEFGSCKFPENFTGCQDLAKQKV*

>Glyma04g39370.5   sequence type=predicted peptide   gene model=Glyma04g39370   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAAMNSSVLACSYAISGAACSELNGKVTSVAYVACSGYKLPLIKAEARVPKAKESEGGRRGALVLLAATLFTSAASNSSANAGIIEDYLERSKANKELNDKKRLATTGANFARAYTVEFGSCKFPENFTGCQDLAKQKKVPFLSDDLELECEGKDKYKCGSNVFWKW*

>Glyma04g39370.6   sequence type=predicted peptide   gene model=Glyma04g39370   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAAMNSSVLACSYAISGAACSELNGKVTSVAYVACSGYKLPLIKAEARVPKAKESEGGRRGALVLLAATLFTSAASNSSANAGIIEDYLERSKANKISLCAIGIE*

>Glyma04g39370.7   sequence type=predicted peptide   gene model=Glyma04g39370   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAAMNSSVLACSYAISGAACSELNGKVTSVAYVACSGYKLPLIKAEARVPKAKESEGGRRGALVLLAATLFTSAASNSSANAGIIEDYLERSKANKISLCAIGIE*

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