Report for Sequence Feature Glyma04g39270
Feature Type: gene_model
Chromosome: Gm04
Start: 45497545
stop: 45498704
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma04g39270
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT3G18690 AT
Annotation by Michelle Graham. TAIR10: MAP kinase substrate 1 | chr3:6429755-6430423 REVERSE LENGTH=222
SoyBase E_val: 4.00E-31 ISS
GO:0009870 GO-bp
Annotation by Michelle Graham. GO Biological Process: defense response signaling pathway, resistance gene-dependent
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0005515 GO-mf
Annotation by Michelle Graham. GO Molecular Function: protein binding
SoyBase N/A ISS
PF05678 PFAM
VQ motif
JGI ISS
UniRef100_G7LD80 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Protein MKS1 n=1 Tax=Medicago truncatula RepID=G7LD80_MEDTR
SoyBase E_val: 2.00E-67 ISS
UniRef100_I1JY37 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JY37_SOYBN
SoyBase E_val: 6.00E-148 ISS
Proteins Associated with Glyma04g39270
Locus Gene Symbol Protein Name
VQ13 VQ motif containing protein gene 13
Expression Patterns of Glyma04g39270
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma04g39270
Paralog Evidence Comments
Glyma06g15650 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma04g39270 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.04g214700 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma04g39270
Coding sequences of Glyma04g39270
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma04g39270.2 sequence type=CDS gene model=Glyma04g39270 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGGGTTGGAGTCAACGACACCTCGCCTCAAAAGTCAACAAATGTGCATATATCTATTTTGTTCCGAAAGTAAATTACTCAAAAAATTCAGTTCCAAACTCCGTTTAGTTTCTCTTCCAATTTTCTGTTTCTTCTCATTTCTCAACCTCACACCGCACTCTCTCTCTACACCTCGCCGCTCCAGATTATTTCTCTTCCTCCGAATGAATCCGCCGGAGATTCCCTTCGGCGGAGCCCCGCCGCCGAAAAAAGAGGTTCAGCTCCAGGGCCCGCGGCCGCCGCCTCTCAAAGTGAGCAAAGATTCGCACAAGATCAAGAAGCCGCCGCCGCACCCGGCGCACCACCACCATAACCACCCCCACGCGCCGCCGGAGCAGAACCTACAACAGCGGGAACCGGTGATAATCTACTCCGTCTCCCCCAAAGTCATCCACGTCACCCCCGGCGACTTCATGGACGTGGTCCAGCGCCTCACCGGAGCTTCCTCCGGCGAGTACCCGCCGGCGGGTCGCGGCGATGTGTCGCCGGCGGCAAGGCTGGCCTCGATCGAGAAAACGAGCCCGTCGGAGAGAGAAAGGGTTTTGCACTACAAAGACGACGACATCGCGTGGATGTTGGAGGAGGGAGTGGAAGTAGGTCAATTTCCGGGGATACTGACGCCAGAGCCGGGAACCTTGCCGCCGATTCCGGCGGAGGTGTTTTCTCCGCCAATTTCCGGGGAGGACTTTTCGCCGTCATATTGGTCGGCGAGCAGCTTCTTGGCGAGTCCGTCGGGGTTTCTTTCCGTCGCCGTGGCGTCGCCGCAGCCGTCGCCGAACCTCTTCAGTCTCTTCGACTTGTAA
Predicted protein sequences of Glyma04g39270
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma04g39270.2 sequence type=predicted peptide gene model=Glyma04g39270 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MGLESTTPRLKSQQMCIYLFCSESKLLKKFSSKLRLVSLPIFCFFSFLNLTPHSLSTPRRSRLFLFLRMNPPEIPFGGAPPPKKEVQLQGPRPPPLKVSKDSHKIKKPPPHPAHHHHNHPHAPPEQNLQQREPVIIYSVSPKVIHVTPGDFMDVVQRLTGASSGEYPPAGRGDVSPAARLASIEKTSPSERERVLHYKDDDIAWMLEEGVEVGQFPGILTPEPGTLPPIPAEVFSPPISGEDFSPSYWSASSFLASPSGFLSVAVASPQPSPNLFSLFDL*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
