Glyma04g39260 - SoyBase

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Report for Sequence Feature Glyma04g39260

Feature Type:	gene_model
Chromosome:	Gm04
Start:	45490628
stop:	45494690
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g39260

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G09790	AT	Annotation by Michelle Graham. TAIR10: ARABIDOPSIS TRITHORAX-RELATED PROTEIN 5 \| chr5:3039204-3040970 REVERSE LENGTH=379	SoyBase	E_val: 1.00E-166	ISS
GO:0006275	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of DNA replication	SoyBase	N/A	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0009294	GO-bp	Annotation by Michelle Graham. GO Biological Process: DNA mediated transformation	SoyBase	N/A	ISS
GO:0009555	GO-bp	Annotation by Michelle Graham. GO Biological Process: pollen development	SoyBase	N/A	ISS
GO:0051726	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of cell cycle	SoyBase	N/A	ISS
GO:0070734	GO-bp	Annotation by Michelle Graham. GO Biological Process: histone H3-K27 methylation	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
GO:0046976	GO-mf	Annotation by Michelle Graham. GO Molecular Function: histone methyltransferase activity (H3-K27 specific)	SoyBase	N/A	ISS
PTHR10615	Panther	MYST-RELATED PROTEINS	JGI		ISS
PTHR10615:SF20	Panther	MYST-RELATED	JGI		ISS
PF00628	PFAM	PHD-finger	JGI		ISS
PF00856	PFAM	SET domain	JGI		ISS
UniRef100_B9RU15	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Histone-lysine N-methyltransferase ATXR6, putative n=1 Tax=Ricinus communis RepID=B9RU15_RICCO	SoyBase	E_val: 0	ISS
UniRef100_I1JY36	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JY36_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma04g39260

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g39260

Paralog	Evidence	Comments
Glyma06g15660	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g39260 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g214600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g39260

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma04g39260

Limit To All Plant Sequences

>Glyma04g39260.1   sequence type=CDS   gene model=Glyma04g39260   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTACTGCCACCACCAATTCTTCGCCCTCGGCTCAGCGCCACGTCGGCTTCAGCCGCCGCACGCAGGCGCCGCGCCAGCTGGACGACGACTCGCCGCCGGTGAACAAGTACCGGCTGCTGTCGGAGATAATGGCGCGCGCGCCGTACGCGGTGCTGGAGAGAGAAACATACAGCGACCTCTTGTGCGACCAATGCGGCTCCGGCGAGCTGCCGGAGGAGCTGCTTCTCTGCGACAAATGCGATAAAGGCTTCCACATGAAATGCGTCAGGCCTATCGTCGTGAGGGTTCCGATTGGGTCGTGGCTTTGCCCTAACTGTCAGGGAGGGAAGAGAGTGCGGACTTTCTCTCAGAAGAAGATAATTGATTTCTTCGGGATTCGGAGGAGTTCTGATGATGCTAATGACAAGCGTTCTTCTCAGGATGCTAAGAAGCGTCGGAAACGTTCACGGCCTCTGGTATTACATAAGAAAAAGAGGAGATTGTTACCATTTGTTCCTACAAAAGATCCTGCCCAGAGATTGAAACAGATGGGTTCTCTTGCTTCTGCTTTAACAGCCTTAAATTTGGAATTCAGTGATCACCTCACATACTTGCCTGGAATGGCTCCTAGATCTGCAAATCAAGCCTCACTTGAAAATGGCGGCATGCAGACTCTTTCCAAGGAAGACATGGAGACCTTAGAAAAATGCATTGCTATGTCTAAAAGAGGCGAATTCCCTCCCTTTATGGTTGTTTATGATTCACGTGAAGGCTATACTGTTGAGGCTGATGACCTAATCAAGGACATGACAATTATTGCTGAATACACTGGCGATGTGGATTACCTTGACAAACGGGAACAGGATGACTGTGACAGTATCATGACCCTTCTTCTTGGAGCAGAAAGTTCTCAAAGTCTTGTTATTTGTGCTGATAAACGAGGAAACATTGCTCGCTTTATCAGTGGCATAAATAATCACACACAGGAAGGTAGGAAGAAGCAGAATTGTAAGTGTGTGAGATACAATGTTAATGGTGAATGCAGGGTCTTTTTGGTTGCTACTCGTGATATTTCTAAGGGAGAGAGGCTATACTATGATTATAATGGTCATGAGTATGAATACCCGACTCATCATTTTGTCTAA

Predicted protein sequences of Glyma04g39260

Limit To All Plant Sequences

>Glyma04g39260.1   sequence type=predicted peptide   gene model=Glyma04g39260   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MATATTNSSPSAQRHVGFSRRTQAPRQLDDDSPPVNKYRLLSEIMARAPYAVLERETYSDLLCDQCGSGELPEELLLCDKCDKGFHMKCVRPIVVRVPIGSWLCPNCQGGKRVRTFSQKKIIDFFGIRRSSDDANDKRSSQDAKKRRKRSRPLVLHKKKRRLLPFVPTKDPAQRLKQMGSLASALTALNLEFSDHLTYLPGMAPRSANQASLENGGMQTLSKEDMETLEKCIAMSKRGEFPPFMVVYDSREGYTVEADDLIKDMTIIAEYTGDVDYLDKREQDDCDSIMTLLLGAESSQSLVICADKRGNIARFISGINNHTQEGRKKQNCKCVRYNVNGECRVFLVATRDISKGERLYYDYNGHEYEYPTHHFV*

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