Glyma04g39240 - SoyBase

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Report for Sequence Feature Glyma04g39240

Feature Type:	gene_model
Chromosome:	Gm04
Start:	45474075
stop:	45481210
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g39240

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G18660	AT	Annotation by Michelle Graham. TAIR10: plant glycogenin-like starch initiation protein 1 \| chr3:6419211-6421959 REVERSE LENGTH=659	SoyBase	E_val: 0	ISS
GO:0005982	GO-bp	Annotation by Michelle Graham. GO Biological Process: starch metabolic process	SoyBase	N/A	ISS
GO:0009058	GO-bp	Annotation by Michelle Graham. GO Biological Process: biosynthetic process	SoyBase	N/A	ISS
GO:0009834	GO-bp	Annotation by Michelle Graham. GO Biological Process: secondary cell wall biogenesis	SoyBase	N/A	ISS
GO:0010413	GO-bp	Annotation by Michelle Graham. GO Biological Process: glucuronoxylan metabolic process	SoyBase	N/A	ISS
GO:0010417	GO-bp	Annotation by Michelle Graham. GO Biological Process: glucuronoxylan biosynthetic process	SoyBase	N/A	ISS
GO:0045492	GO-bp	Annotation by Michelle Graham. GO Biological Process: xylan biosynthetic process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005794	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus	SoyBase	N/A	ISS
GO:0015020	GO-mf	Annotation by Michelle Graham. GO Molecular Function: glucuronosyltransferase activity	SoyBase	N/A	ISS
GO:0016757	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring glycosyl groups	SoyBase	N/A	ISS
GO:0080116	GO-mf	Annotation by Michelle Graham. GO Molecular Function: glucuronoxylan glucuronosyltransferase activity	SoyBase	N/A	ISS
KOG1950	KOG	Glycosyl transferase, family 8 - glycogenin	JGI		ISS
PTHR11183	Panther	GLYCOGENIN	JGI		ISS
PTHR11183:SF7	Panther	GLYCOGENIN	JGI		ISS
PF01501	PFAM	Glycosyl transferase family 8	JGI		ISS
UniRef100_B9RU18	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Glycogenin, putative n=1 Tax=Ricinus communis RepID=B9RU18_RICCO	SoyBase	E_val: 0	ISS
UniRef100_I1JY34	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1JY34_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma04g39240

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma04g39240 not represented in the dataset	Glyma04g39240 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g39240

Paralog	Evidence	Comments
Glyma06g15690	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g39240 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g214400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g39240

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma04g39240

Limit To All Plant Sequences

>Glyma04g39240.3   sequence type=transcript   gene model=Glyma04g39240   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AAAGAAGAAGAGAAATGAGAGTAATAAAAAGAAAGGAAAAGAAGTTGATGGATGCGGCAGAGTTGGTGAGTACCAAAAATTAGAATGAAACTAAAAGATGAAGGAAAAATTCTGAAGGACGTTATTGGGAGGGTTACTCGGTCTATATTGACTCAAACGCCCCAACAATGCCATCATTAAGTGTTTTTTCTGTTTCTTCTTCCATGGTCTTCTCTCTGTTCTCCATAAGGTCGCAGATTTCTCTATCTCTCTTTGTGCTTCACAACAACAACAACAACAACAAGAGCATTGTCTATCTTCTTAATTAGTTCCTGTTTTGGTGGTCAGATGGTAGCATGCCCCTGTAGGTGAATAGTTAATTAAAATGAGAGGAACAATGTCAATGGGAACTTCTCCTCTTGCCGTTGAAGCTAGACACCGTTTGCCTGCATCCATTGAAGATTTATACAAACGAAGACTTCCAAGAAACAAAGCAAAAGATGCAGAGAAGCCTTTCCACTTATCTGTCCAAGATAGGAGCTCAAGATGCAAATTGTCTTTCTTAAAACTTATCCTATTGATAACCATATGCGGCATTTTTGTAACCCTCCTATACTCTCCGGAAGTTTACAATACCAACCATTTATCAAGCTCTGGCACTCGGTGGATATGGGGTGGTTCAGATCCTCGTTACATGTCCAATGTAGCCACTGACTGGGATGACATACTGAAAATTACGGAGAAACTGACAGGGGAAGATGAACTTGAAGGAATTGGGCTAGTAAATTTCAACAAGACTGAACTAGCACAATGGGAGCATCTTATTCCTGATGCAACACATGTTGTTCTGCCTCTGGAGTATGCTGCAAGAAATGTGACGTGGGAGTCCTTGTACCCGGAATGGATCGACGAGGAAGAAGAAACCGAAGTTCCTGTTTGTCCTTCTCTTCCAAGTCTAAGATCCCCTGGCATAAGACTTAACCTCATTTCTGTGAAGCTTCCTTGTAGGAATGGAGGGAACTGGTCTAGAGACGTTGCTCGTTTGCACCTTCAGCTTGCAGCTGCTGCACTTGCAACCTCTTTCAAAGGCAACTACCCCGTTTATGTGCTCTTCATTACCAACTGCTTTCCAATACCAAATTTGTTCTCATGTAAAGAACTAGTTGCACGTGAAGGGAATGTGTGGCTATACAAACCAAACTTGAGTGTCTTGAGAGAAAAGGTCCAGCTTCCTGTAGGGTCTTGTGAACTTGCACTTCCTATGAGAGGCAAAGAACTGGTATACAATGGAAATGCTCCCAGAGAAGCCTATGCAACAATTCTGCATTCGGCTCATGTCTATGTTTGTGGGGCTATAGCTGCTGCGCAAAGCATCCGCATGTCTGGATCAACTCGAGACCTTGTAATACTTGTTGATGAGACAATCAGCAGCTATCACAGAAGTGGTTTGGAAGCAGCAGGTTGGAAGGTTAGAACAATACAAAGGATCAGAAACCCCAAAGCTGAAAAAGATGCTTACAATGAATGGAACTACAGCAAGTTCAGGCTATGGCAGCTGACAGATTATGACAAGATAATATTCATTGATGCAGATTTGCTCATACTAAGAAACATCGATTTCCTATTTGGAATGCCAGAAATCACTGCCACTGGAAACAATGCCACTCTCTTTAACTCGGGTGTCATGGTGGTTGAGCCATCAAATTGCACATTCCAGCTCCTGATGGATCATATCAATGAGATTGAGTCCTACAATGGAGGAGACCAGGGATATTTGAACGAAATATTTACGTGGTGGCACAGGATACCAAGACACATGAACTTCTTGAAGCATTTTTGGATTGGCGATGAGGAAGAGAAGAAACAAATGAAAACTCTGTTGTTTGGTGCAGAACCTCCAATTTTGTATGTCCTTCACTATCTAGGTGTGAAGCCATGGTTATGCTTCCGGGACTATGATTGCAACTGGAATGATGATATCTTTCATGAATTTGCAAGTGATGTTGCACATGCAAAGTGGTGGAAGGTGCATGATGCAATGCCTGAGCTTTTGCAGCAGTTTTGCCTGTTGAAGTCAAAGCAGAAGGCACAGTTGGAGTGGGATCGTAAGCAGGCTGAAATAGCAAACTACACGGATGGGCATTGGCGAATTAAAGTTAAAGATAGGCGCTTGAAGAAATGTATAGATAATTTGTGCAACTGGAAAAGCATGTTGCGGCACTGGGGAGAGACAAATTGGACAGATGATGAGTTTTATACTCCAACACCACCTACAGTTATCACAGCATCTCTTTCTGCTTTATGAGTTGTCAGTTGCACTTTCTATTTTCCTTGCTTATGTTAAAGTTTCCTAGTGTTAGGAACAAGGGATGATGGGAACATTTTTCCTCATACATATTTTTTATGCATAAAAATGGTGTATTCTATTCTATGGTCTGATTCTGATCATAAAGTAACAGATGTCACCACAAATCAATTTTACAGGAATTTACCTATAGGCATACTTCTTTGTTAAATGGTCATAACTCACAA

Coding sequences of Glyma04g39240

Limit To All Plant Sequences

>Glyma04g39240.2   sequence type=CDS   gene model=Glyma04g39240   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGAGGAACAATGTCAATGGGAACTTCTCCTCTTGCCGTTGAAGCTAGACACCGTTTGCCTGCATCCATTGAAGATTTATACAAACGAAGACTTCCAAGAAACAAAGCAAAAGATGCAGAGAAGCCTTTCCACTTATCTGTCCAAGATAGGAGCTCAAGATGCAAATTGTCTTTCTTAAAACTTATCCTATTGATAACCATATGCGGCATTTTTGTAACCCTCCTATACTCTCCGGAAGTTTACAATACCAACCATTTATCAAGCTCTGGCACTCGGTGGATATGGGGTGGTTCAGATCCTCGTTACATGTCCAATGTAGCCACTGACTGGGATGACATACTGAAAATTACGGAGAAACTGACAGGGGAAGATGAACTTGAAGGAATTGGGCTAGTAAATTTCAACAAGACTGAACTAGCACAATGGGAGCATCTTATTCCTGATGCAACACATGTTGTTCTGCCTCTGGAGTATGCTGCAAGAAATGTGACGTGGGAGTCCTTGTACCCGGAATGGATCGACGAGGAAGAAGAAACCGAAGTTCCTGTTTGTCCTTCTCTTCCAAGTCTAAGATCCCCTGGCATAAGACTTAACCTCATTTCTGTGAAGCTTCCTTGTAGGAATGGAGGGAACTGGTCTAGAGACGTTGCTCGTTTGCACCTTCAGCTTGCAGCTGCTGCACTTGCAACCTCTTTCAAAGGCAACTACCCCGTTTATGTGCTCTTCATTACCAACTGCTTTCCAATACCAAATTTGTTCTCATGTAAAGAACTAGTTGCACGTGAAGGGAATGTGTGGCTATACAAACCAAACTTGAGTGTCTTGAGAGAAAAGGTCCAGCTTCCTGTAGGGTCTTGTGAACTTGCACTTCCTATGAGAGGCAAAGAACTGGTATACAATGGAAATGCTCCCAGAGAAGCCTATGCAACAATTCTGCATTCGGCTCATGTCTATGTTTGTGGGGCTATAGCTGCTGCGCAAAGCATCCGCATGTCTGGATCAACTCGAGACCTTGTAATACTTGTTGATGAGACAATCAGCAGCTATCACAGAAGTGGTTTGGAAGCAGCAGGTTGGAAGGTTAGAACAATACAAAGGATCAGAAACCCCAAAGCTGAAAAAGATGCTTACAATGAATGGAACTACAGCAAGTTCAGGCTATGGCAGCTGACAGATTATGACAAGATAATATTCATTGATGCAGATTTGCTCATACTAAGAAACATCGATTTCCTATTTGGAATGCCAGAAATCACTGCCACTGGAAACAATGCCACTCTCTTTAACTCGGGTGTCATGGTGGTTGAGCCATCAAATTGCACATTCCAGCTCCTGATGGATCATATCAATGAGATTGAGTCCTACAATGGAGGAGACCAGGGATATTTGAACGAAATATTTACGTGGTGGCACAGGATACCAAGACACATGAACTTCTTGAAGCATTTTTGGATTGGCGATGAGGAAGAGAAGAAACAAATGAAAACTCTGTTGTTTGGTGCAGAACCTCCAATTTTGTATGTCCTTCACTATCTAGGTGTGAAGCCATGGTTATGCTTCCGGGACTATGATTGCAACTGGAATGATGATATCTTTCATGAATTTGCAAGTGATGTTGCACATGCAAAGTGGTGGAAGGTGCATGATGCAATGCCTGAGCTTTTGCAGCAGTTTTGCCTGTTGAAGTCAAAGCAGAAGGCACAGTTGGAGTGGGATCGTAAGCAGGCTGAAATAGCAAACTACACGGATGGGCATTGGCGAATTAAAGTTAAAGATAGGCGCTTGAAGAAATGTATAGATAATTTGTGCAACTGGAAAAGCATGTTGCGGCACTGGGGAGAGACAAATTGGACAGATGATGAGTTTTATACTCCAACACCACCTACAGTTATCACAGCATCTCTTTCTGCTTTATGA

>Glyma04g39240.3   sequence type=CDS   gene model=Glyma04g39240   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGAGGAACAATGTCAATGGGAACTTCTCCTCTTGCCGTTGAAGCTAGACACCGTTTGCCTGCATCCATTGAAGATTTATACAAACGAAGACTTCCAAGAAACAAAGCAAAAGATGCAGAGAAGCCTTTCCACTTATCTGTCCAAGATAGGAGCTCAAGATGCAAATTGTCTTTCTTAAAACTTATCCTATTGATAACCATATGCGGCATTTTTGTAACCCTCCTATACTCTCCGGAAGTTTACAATACCAACCATTTATCAAGCTCTGGCACTCGGTGGATATGGGGTGGTTCAGATCCTCGTTACATGTCCAATGTAGCCACTGACTGGGATGACATACTGAAAATTACGGAGAAACTGACAGGGGAAGATGAACTTGAAGGAATTGGGCTAGTAAATTTCAACAAGACTGAACTAGCACAATGGGAGCATCTTATTCCTGATGCAACACATGTTGTTCTGCCTCTGGAGTATGCTGCAAGAAATGTGACGTGGGAGTCCTTGTACCCGGAATGGATCGACGAGGAAGAAGAAACCGAAGTTCCTGTTTGTCCTTCTCTTCCAAGTCTAAGATCCCCTGGCATAAGACTTAACCTCATTTCTGTGAAGCTTCCTTGTAGGAATGGAGGGAACTGGTCTAGAGACGTTGCTCGTTTGCACCTTCAGCTTGCAGCTGCTGCACTTGCAACCTCTTTCAAAGGCAACTACCCCGTTTATGTGCTCTTCATTACCAACTGCTTTCCAATACCAAATTTGTTCTCATGTAAAGAACTAGTTGCACGTGAAGGGAATGTGTGGCTATACAAACCAAACTTGAGTGTCTTGAGAGAAAAGGTCCAGCTTCCTGTAGGGTCTTGTGAACTTGCACTTCCTATGAGAGGCAAAGAACTGGTATACAATGGAAATGCTCCCAGAGAAGCCTATGCAACAATTCTGCATTCGGCTCATGTCTATGTTTGTGGGGCTATAGCTGCTGCGCAAAGCATCCGCATGTCTGGATCAACTCGAGACCTTGTAATACTTGTTGATGAGACAATCAGCAGCTATCACAGAAGTGGTTTGGAAGCAGCAGGTTGGAAGGTTAGAACAATACAAAGGATCAGAAACCCCAAAGCTGAAAAAGATGCTTACAATGAATGGAACTACAGCAAGTTCAGGCTATGGCAGCTGACAGATTATGACAAGATAATATTCATTGATGCAGATTTGCTCATACTAAGAAACATCGATTTCCTATTTGGAATGCCAGAAATCACTGCCACTGGAAACAATGCCACTCTCTTTAACTCGGGTGTCATGGTGGTTGAGCCATCAAATTGCACATTCCAGCTCCTGATGGATCATATCAATGAGATTGAGTCCTACAATGGAGGAGACCAGGGATATTTGAACGAAATATTTACGTGGTGGCACAGGATACCAAGACACATGAACTTCTTGAAGCATTTTTGGATTGGCGATGAGGAAGAGAAGAAACAAATGAAAACTCTGTTGTTTGGTGCAGAACCTCCAATTTTGTATGTCCTTCACTATCTAGGTGTGAAGCCATGGTTATGCTTCCGGGACTATGATTGCAACTGGAATGATGATATCTTTCATGAATTTGCAAGTGATGTTGCACATGCAAAGTGGTGGAAGGTGCATGATGCAATGCCTGAGCTTTTGCAGCAGTTTTGCCTGTTGAAGTCAAAGCAGAAGGCACAGTTGGAGTGGGATCGTAAGCAGGCTGAAATAGCAAACTACACGGATGGGCATTGGCGAATTAAAGTTAAAGATAGGCGCTTGAAGAAATGTATAGATAATTTGTGCAACTGGAAAAGCATGTTGCGGCACTGGGGAGAGACAAATTGGACAGATGATGAGTTTTATACTCCAACACCACCTACAGTTATCACAGCATCTCTTTCTGCTTTATGA

Predicted protein sequences of Glyma04g39240

Limit To All Plant Sequences

>Glyma04g39240.2   sequence type=predicted peptide   gene model=Glyma04g39240   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MRGTMSMGTSPLAVEARHRLPASIEDLYKRRLPRNKAKDAEKPFHLSVQDRSSRCKLSFLKLILLITICGIFVTLLYSPEVYNTNHLSSSGTRWIWGGSDPRYMSNVATDWDDILKITEKLTGEDELEGIGLVNFNKTELAQWEHLIPDATHVVLPLEYAARNVTWESLYPEWIDEEEETEVPVCPSLPSLRSPGIRLNLISVKLPCRNGGNWSRDVARLHLQLAAAALATSFKGNYPVYVLFITNCFPIPNLFSCKELVAREGNVWLYKPNLSVLREKVQLPVGSCELALPMRGKELVYNGNAPREAYATILHSAHVYVCGAIAAAQSIRMSGSTRDLVILVDETISSYHRSGLEAAGWKVRTIQRIRNPKAEKDAYNEWNYSKFRLWQLTDYDKIIFIDADLLILRNIDFLFGMPEITATGNNATLFNSGVMVVEPSNCTFQLLMDHINEIESYNGGDQGYLNEIFTWWHRIPRHMNFLKHFWIGDEEEKKQMKTLLFGAEPPILYVLHYLGVKPWLCFRDYDCNWNDDIFHEFASDVAHAKWWKVHDAMPELLQQFCLLKSKQKAQLEWDRKQAEIANYTDGHWRIKVKDRRLKKCIDNLCNWKSMLRHWGETNWTDDEFYTPTPPTVITASLSAL*

>Glyma04g39240.3   sequence type=predicted peptide   gene model=Glyma04g39240   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MRGTMSMGTSPLAVEARHRLPASIEDLYKRRLPRNKAKDAEKPFHLSVQDRSSRCKLSFLKLILLITICGIFVTLLYSPEVYNTNHLSSSGTRWIWGGSDPRYMSNVATDWDDILKITEKLTGEDELEGIGLVNFNKTELAQWEHLIPDATHVVLPLEYAARNVTWESLYPEWIDEEEETEVPVCPSLPSLRSPGIRLNLISVKLPCRNGGNWSRDVARLHLQLAAAALATSFKGNYPVYVLFITNCFPIPNLFSCKELVAREGNVWLYKPNLSVLREKVQLPVGSCELALPMRGKELVYNGNAPREAYATILHSAHVYVCGAIAAAQSIRMSGSTRDLVILVDETISSYHRSGLEAAGWKVRTIQRIRNPKAEKDAYNEWNYSKFRLWQLTDYDKIIFIDADLLILRNIDFLFGMPEITATGNNATLFNSGVMVVEPSNCTFQLLMDHINEIESYNGGDQGYLNEIFTWWHRIPRHMNFLKHFWIGDEEEKKQMKTLLFGAEPPILYVLHYLGVKPWLCFRDYDCNWNDDIFHEFASDVAHAKWWKVHDAMPELLQQFCLLKSKQKAQLEWDRKQAEIANYTDGHWRIKVKDRRLKKCIDNLCNWKSMLRHWGETNWTDDEFYTPTPPTVITASLSAL*

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