Glyma04g39170 - SoyBase

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Report for Sequence Feature Glyma04g39170

Feature Type:	gene_model
Chromosome:	Gm04
Start:	45407752
stop:	45416905
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g39170

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G64600	AT	Annotation by Michelle Graham. TAIR10: O-fucosyltransferase family protein \| chr5:25825178-25827931 FORWARD LENGTH=522	SoyBase	E_val: 0	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005794	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus	SoyBase	N/A	ISS
GO:0016757	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring glycosyl groups	SoyBase	N/A	ISS
PF10250	PFAM	GDP-fucose protein O-fucosyltransferase	JGI		ISS
UniRef100_G7JBI4	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: DUF246 domain-containing protein n=1 Tax=Medicago truncatula RepID=G7JBI4_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI000233A055	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233A055 related cluster n=1 Tax=unknown RepID=UPI000233A055	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma04g39170

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g39170

Paralog	Evidence	Comments
Glyma06g15770	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g39170 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g213700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g39170

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma04g39170

Limit To All Plant Sequences

>Glyma04g39170.1   sequence type=CDS   gene model=Glyma04g39170   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTAAGCAGAGTCTCGTACAGGTCCAGCAGCCTCTTGACTGGTAGATTTCATGCTAGAAAGCTATCTCCTAGCATTATCACTTTCTACACCATGTTCATATTTTCTTTCTCCGTCTTCGTCTTGTTCTACGTGAGACACATCAGTGTTGATGAAGATCCACCACACCCTCTGCTTTCTCAACAATCTAAATCTCACCAGGTGCCAGAGTTACCTGTGCACTATAAGCAACTTTGGGATACTCTGTTCAATCATGGCTTACACCAATGTGTCAAGCCGACTACTAAATATAAAGCTGCCCAAGGATTTGATCGCTACCTAACTGTGAGAAGTAATGGTGGACTAAATCAAATGCGCACTGGTATATCAGACATGGTGGCTGTGGCACATATAATGAATGCAACTTTAGTCATACCTCAATTGGATAAACGCTCATTCTGGAAAGACTCTAGTGTATTTTCAGATGTATTTGATGAGTTTCATTTCATCGAATCCCTGAAAGGAGATATCAGGATTGTTAGTGAGCTTCCCAAAAACTTGGAAGGTGTCCCCCGGGCCAGGAAACACTTTACTTCCTGGTCTGGAGTCAGTTACTATGAAGAGATGACAAGATTATGGAGTGACTATCAGGTGATACATGTTGCAAAATCAGATTCTCGACTGGCAAACAATGATCTTCCTCTGGACATACAGAGGTTGAGATGCCGTGCGATGTATCATGCACTTCGATTTTCTCCTCCTATAGAGAATTTAGGAAAGAGGTTGGTGGATCGGCTGAGATCACACGGAGGAAGATATATTGCTCTCCATCTGAGATATGAGAAAGATATGCTTTCTTTTACTGGTTGTGCATATGGTCTGACAGATGCAGAATCTGAAGAGCTTAGAATTTTGAGGGAGAATACAAATTATTGGAAAGTAAAAAAGATAAATTCAACAGAACAGAGAGTTGGAGGATTTTGTCCACTGACTCCAAAGGAGGTGGGCATTTTTCTTCATGCTCTTGGGTATCCCCCATCTACACCAATATACATTGCAGCAGGAGAGATCTATGGTGGTAATACTCATCTTTCGGAGCTCTCATCCCGCTACCCTAATCTAATCTTTAAGGAATCCCTTGCAACTCCTGAAGAGCTGAAAGATTTTGCCAATCACGCTTCCCAAACTGCTGCACTTGATTACATAATCTGTGTAGAGAGTGATGTATTTGTTCCATCATATTCAGGAAATATGGCAAGAGCAGTTGAGGGGCACCGCAGATTCTTAGGTCACCGCAAGACAATCAACCCAGACAGGAAAGGACTTGTTGGAATTTTTTATATGCTGGAAACTGGAGAGCTAGAAGAAGGAAGGGAACTATCAAATATGGTGCAGCGGATGCACAAGAACAGGCAAGGAGCTCCAAGGAAAAGGCACGGTTCTCTACCGGGAATTAAAGGCCGAGCACGATTTAGGACTGAAGAGCCCTTTTATGAAAATCCATATCCTGAGTGTATATGTGGTTCTAAAAGCAAACTTGATATAACATGA

Predicted protein sequences of Glyma04g39170

Limit To All Plant Sequences

>Glyma04g39170.1   sequence type=predicted peptide   gene model=Glyma04g39170   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVSRVSYRSSSLLTGRFHARKLSPSIITFYTMFIFSFSVFVLFYVRHISVDEDPPHPLLSQQSKSHQVPELPVHYKQLWDTLFNHGLHQCVKPTTKYKAAQGFDRYLTVRSNGGLNQMRTGISDMVAVAHIMNATLVIPQLDKRSFWKDSSVFSDVFDEFHFIESLKGDIRIVSELPKNLEGVPRARKHFTSWSGVSYYEEMTRLWSDYQVIHVAKSDSRLANNDLPLDIQRLRCRAMYHALRFSPPIENLGKRLVDRLRSHGGRYIALHLRYEKDMLSFTGCAYGLTDAESEELRILRENTNYWKVKKINSTEQRVGGFCPLTPKEVGIFLHALGYPPSTPIYIAAGEIYGGNTHLSELSSRYPNLIFKESLATPEELKDFANHASQTAALDYIICVESDVFVPSYSGNMARAVEGHRRFLGHRKTINPDRKGLVGIFYMLETGELEEGRELSNMVQRMHKNRQGAPRKRHGSLPGIKGRARFRTEEPFYENPYPECICGSKSKLDIT*

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