Glyma04g39130 - SoyBase

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Report for Sequence Feature Glyma04g39130

Feature Type:	gene_model
Chromosome:	Gm04
Start:	45374081
stop:	45376886
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g39130

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G13690	AT	Annotation by Michelle Graham. TAIR10: PRLI-interacting factor, putative \| chr2:5706704-5708895 REVERSE LENGTH=544	SoyBase	E_val: 0	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
UniRef100_G7JBJ6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: PRLI-interacting factor G n=1 Tax=Medicago truncatula RepID=G7JBJ6_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI000233A053	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233A053 related cluster n=1 Tax=unknown RepID=UPI000233A053	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma04g39130

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g39130

Paralog	Evidence	Comments
Glyma06g15850	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g39130 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g213200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g39130

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma04g39130

Limit To All Plant Sequences

>Glyma04g39130.1   sequence type=CDS   gene model=Glyma04g39130   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGACCCTCACCGCCGCCACCGCCACCGCCGCCGCACGTGGTGCTGCTCCTTTGCCGTCCCTCCCTCCAGCCCCGACAACCTTACTAACTCCTCCAAACCTCTCCCTCGCAACTCCGAGCCTCACTCCAAACCTGCATTCTCCCTCCCAAACTCCCCCAAATCCCGCATCCCAGTCAAGATCGACCCTCGCCGGATCCTTTCCCCGGGAAGAGTCTCCCCCATCGACTCCGATCCCGTCGCCGGAGAACCTCTTCCCTTTCCCCCTCCCTCGCCGGAGCCGCCGCGGCCGCCATCTCCGGCGGCGGCTACCGGCGAGAGGGACGTGAGGATGAGCCTGAGAGGAAAGAACGGCGGGTGCATGGTTCTGGAAGTGAACTCAGGAGTTCTCTGCGCGAATTCGGAAGTGTTCGCGGGGTTGATAGAGGATTACAAGAAAGGGTCTTCGAGTGGTAGCAACAAAATGTGTAGAATAGAGGTTCCGGAAGTTGACAACTTGGGAGTGTTCAGAGAAACCATTGAGCTCATGTTCGAGAACGATGATGGCGTCACCAAGAGGCTTCTTAACATTGGCGTTTTTCGATCCATTGACGTTTTGGAGGTTTCAGCAGGCATCATGTTCACTAAGGGTGTTTTGTCGTGTTTACAATACCTTGAAGCCATGCCTTGGACTGAAGAAGAAGAAGAAAAACTGAGAAGCCTATTCACAAGATTCGAGTTTGATGAAGCAACAACAAGAGACATCCTAGGAAGGCTTTACTTGCACGATTCAGTAGATTCTTCTTCCCAGCCAAATGTGGCGCGACAGCTAGTTTGGTCAATTACCACTTGTGTGGATGCCAATGCAAGAAATGAAATGAAGTCACTAGTGAAGGGTCTTCTTTGCAAAAGCTCAGTGTATGAGAAGAATCACCTTGACCTCAGCAAGGAGGATCTGTATTCTGTTTGCCACTTGTGTCTGGACTCATTGATAAGCCTCTTTGAGGAGGCATCTGACACTGAAAGGTTGGCAAAGAAAGATAAGAATAGGCCATTGATTGAACGTGTCGCAAGACAGGTTGATAACATCAACTGGTTGTTGGAAATCTTGCTTGATGGGCAAATAGCAGAGGACTTTGTGAACATATGGGCAGATCAACACCAACTTATTAAAATGCATGAAAATGCATCTCCTATGGTTAGATATGAACTAAGTCGTGTGTCAGCGATGCTTTTTGTTGCCATGGCTACCAGAAAATTGCAATGTCGGTCAGAAGCTCGATTGGGACTTCTTCAGGCATGGTTCAGGCCTATGTTGTTAGACTTTGGTTGGCTTCAGAGATGCAGAAGAGGGCTTGATATAAAGTTATTGCAAGAGGCTATGGGTCAAACACTTCTTACTCTACCTCTAAATCAACAATACATGCTCTTCATGGAATGGTTCAGGCACTTCTCAAGCCATGGAACTGAATGTCCAAATCTAAGCAAGGCATTCCAAATTTGGTGGCGCAGATCTTTCTTAAGAGGCTTTGAAACTGATGCCATTGAGTCAAGGTAA

Predicted protein sequences of Glyma04g39130

Limit To All Plant Sequences

>Glyma04g39130.1   sequence type=predicted peptide   gene model=Glyma04g39130   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDPHRRHRHRRRTWCCSFAVPPSSPDNLTNSSKPLPRNSEPHSKPAFSLPNSPKSRIPVKIDPRRILSPGRVSPIDSDPVAGEPLPFPPPSPEPPRPPSPAAATGERDVRMSLRGKNGGCMVLEVNSGVLCANSEVFAGLIEDYKKGSSSGSNKMCRIEVPEVDNLGVFRETIELMFENDDGVTKRLLNIGVFRSIDVLEVSAGIMFTKGVLSCLQYLEAMPWTEEEEEKLRSLFTRFEFDEATTRDILGRLYLHDSVDSSSQPNVARQLVWSITTCVDANARNEMKSLVKGLLCKSSVYEKNHLDLSKEDLYSVCHLCLDSLISLFEEASDTERLAKKDKNRPLIERVARQVDNINWLLEILLDGQIAEDFVNIWADQHQLIKMHENASPMVRYELSRVSAMLFVAMATRKLQCRSEARLGLLQAWFRPMLLDFGWLQRCRRGLDIKLLQEAMGQTLLTLPLNQQYMLFMEWFRHFSSHGTECPNLSKAFQIWWRRSFLRGFETDAIESR*

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