Glyma04g39110 - SoyBase

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Report for Sequence Feature Glyma04g39110

Feature Type:	gene_model
Chromosome:	Gm04
Start:	45332300
stop:	45338203
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g39110

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G53570	AT	Annotation by Michelle Graham. TAIR10: mitogen-activated protein kinase kinase kinase 3 \| chr1:19987391-19990733 FORWARD LENGTH=608	SoyBase	E_val: 0	ISS
GO:0006468	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein phosphorylation	SoyBase	N/A	ISS
GO:0006487	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein N-linked glycosylation	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0004672	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein kinase activity	SoyBase	N/A	ISS
GO:0004713	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein tyrosine kinase activity	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
GO:0016301	GO-mf	Annotation by Michelle Graham. GO Molecular Function: kinase activity	SoyBase	N/A	ISS
GO:0016772	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring phosphorus-containing groups	SoyBase	N/A	ISS
KOG0198	KOG	MEKK and related serine/threonine protein kinases	JGI		ISS
PTHR24361	Panther	MITOGEN-ACTIVATED KINASE KINASE KINASE	JGI		ISS
PTHR24361:SF64	Panther		JGI		ISS
PF00069	PFAM	Protein kinase domain	JGI		ISS
UniRef100_G7JBK2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Mitogen-activated protein kinase kinase kinase n=1 Tax=Medicago truncatula RepID=G7JBK2_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1JY21	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JY21_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma04g39110

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g39110

Paralog	Evidence	Comments
Glyma06g15870	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g39110 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g213000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g39110

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma04g39110

Limit To All Plant Sequences

>Glyma04g39110.1   sequence type=CDS   gene model=Glyma04g39110   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCCCACTTGGTGGGGTAAAAAGTCCAGCAAGACCAAGGACCAACAGCACCAACAACAACAAGACCACCCTCATGGCGCCGCCGCCACCACCACCCTCCTTCACTTCAATTTTATCAAGCCCAAGCCCAGTAAGAGCTTCGACGACGTCGTGAGAAACTCCCCTCGTGCCAGCCGCGATTTCGGTTCCTCCGCCGCCGTCGACCAAGGTCTTCCCTTGCCTCGCCCCTCCGTCTTCTCCACCCAAAGCTTCGCCATCGACCAAGGCCTTGTTTTTGGATCTGCCTCTGTTTCCGGCTCCAGCGTCAGCTCCAGTGGCTCCTACGATGATCACCCTCAGATTAATGCCTCCAGAGGGCAAGGTGACATGAAGTTCCTTGTGAGGTCTAAAAGCCCGGGTCCTGGGTCAAGAGGGCCCACCAGCCCAACATCACCTCTGCATCCAAAGTTGCTTGGTTTGAGTCTTGACTCCCCTACAGGCAGGCAAGAAGGTGAATGTCATCCATTGCCTCTTCCGCCAGGTTCTCCTACCAGTCCTTCTTCTTCTCTTCCCAGCATGAGAGCAAATGGAATGACGGAACACACTACCAGTAACCTTTCCAAGTGGAAGAAAGGAAAGCTTCTTGGTCGGGGAACATTTGGGCATGTTTACCTGGGATTCAATAGTGATAGTGGACAATTGAGTGCAATTAAAGAAGTCAGGGTTGTCTGTGATGACCAATCATCAAAGGAGTGCCTCAAACAACTTAATCAGGAGATCCATTTGCTCAGTCAGCTTTCACATCCAAACATCGTTCAATACTATGGGAGTGATTTGGGGGAAGAAACACTTTCCGTTTATTTGGAATATGTCTCTGGTGGTTCTATTCATAAATTACTTCAGGAATATGGGGCCTTCAAGGAGCCTGTTATTCAAAATTATACCAGGCAGATTGTCTCTGGACTTTCCTATCTTCATGGGAGAAATACAGTACATAGGGATATCAAAGGGGCTAACATACTAGTTGATCCTAATGGTGAAATCAAGCTGGCAGACTTTGGAATGGCTAAACATATAAATTCTTCTTCCTCCATGCTATCTTTCAAAGGGAGTCCATACTGGATGGCACCCGAGGTTGTAATGAATACAAATGGCTATAGTCTTCCTGTTGATATATGGAGCTTGGGATGCACAATTCTTGAAATGGCAACATCAAAGCCTCCTTGGAATCAGTATGAAGGGGTAGCTGCAATATTTAAAATTGGTAACAGCAGAGATATGCCTGAAATTCCTGATCATCTCTCAAGCGAGGCAAAGAAATTCATTCAGCTATGCTTACAAAGAGATCCATCAGCCCGCCCAACAGCCCAGATGTTACTAGAGCATCCCTTTATTCGAGATCAGTCATTAACAAAAGCTACAAATGTCAGAATAACCAGGGATGCTTTCCCCTGCATGTTTGATGGAAGTCGGACGCCTCCGCCAGTTTTAGATCATTCCAATAGAACAAGTTTAACTTCATTGGATGGAGATTATGCAACAAAGCCAGTTCCTGTAACTTCACGAGCAGAAAGGAGCCCAAGAGATAACACAAGAATGATCACATCTTTACCAGTATCTCCCTGTTCAAGTCCATTGCGACAGTACGAGCCAGCGCACAAGAGCTGTTTCCTTTCTCCTCCTCACCCAACTTACACTTTGATGGGGCAGAATACACTCCCCTCATATCCAGTGAGATCAAATGCCACGTTCACTCTTGACCCTTTTCAGGAAACTTCTTTTTACAAAGCCCACACGCCCGGTGGATCCCCAAGAAGACTCATTTGA

Predicted protein sequences of Glyma04g39110

Limit To All Plant Sequences

>Glyma04g39110.1   sequence type=predicted peptide   gene model=Glyma04g39110   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MPTWWGKKSSKTKDQQHQQQQDHPHGAAATTTLLHFNFIKPKPSKSFDDVVRNSPRASRDFGSSAAVDQGLPLPRPSVFSTQSFAIDQGLVFGSASVSGSSVSSSGSYDDHPQINASRGQGDMKFLVRSKSPGPGSRGPTSPTSPLHPKLLGLSLDSPTGRQEGECHPLPLPPGSPTSPSSSLPSMRANGMTEHTTSNLSKWKKGKLLGRGTFGHVYLGFNSDSGQLSAIKEVRVVCDDQSSKECLKQLNQEIHLLSQLSHPNIVQYYGSDLGEETLSVYLEYVSGGSIHKLLQEYGAFKEPVIQNYTRQIVSGLSYLHGRNTVHRDIKGANILVDPNGEIKLADFGMAKHINSSSSMLSFKGSPYWMAPEVVMNTNGYSLPVDIWSLGCTILEMATSKPPWNQYEGVAAIFKIGNSRDMPEIPDHLSSEAKKFIQLCLQRDPSARPTAQMLLEHPFIRDQSLTKATNVRITRDAFPCMFDGSRTPPPVLDHSNRTSLTSLDGDYATKPVPVTSRAERSPRDNTRMITSLPVSPCSSPLRQYEPAHKSCFLSPPHPTYTLMGQNTLPSYPVRSNATFTLDPFQETSFYKAHTPGGSPRRLI*

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