SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G13650 | AT | Annotation by Michelle Graham. TAIR10: golgi nucleotide sugar transporter 1 | chr2:5687584-5690303 REVERSE LENGTH=333 | SoyBase | E_val: 1.00E-178 | ISS |
| GO:0055085 | GO-bp | Annotation by Michelle Graham. GO Biological Process: transmembrane transport | SoyBase | N/A | ISS |
| GO:0005794 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0005338 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleotide-sugar transmembrane transporter activity | SoyBase | N/A | ISS |
| GO:0005458 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: GDP-mannose transmembrane transporter activity | SoyBase | N/A | ISS |
| KOG1444 | KOG | Nucleotide-sugar transporter VRG4/SQV-7 | JGI | ISS | |
| PTHR11132 | Panther | SOLUTE CARRIER FAMILY 35 | JGI | ISS | |
| UniRef100_G7JBL1 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: GDP-mannose transporter n=1 Tax=Medicago truncatula RepID=G7JBL1_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1JY19 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1JY19_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma04g39070 not represented in the dataset |
Glyma04g39070 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma06g15910 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.04g212800 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma04g39070.2 sequence type=transcript gene model=Glyma04g39070 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high AAGACTTTTGAGCAATTTAATTCAAAGCTATGGCGAACCCAAGCAGCAACAGGGGATCTTTGCCATCCACGGTTCATGCGAATTGCAAAAGGACAAAACCATAAAAGAAAAATTCGCAAAAGTTGGTATCTTCATTCTTCCTTCTTTAAACGCAACGAAGTTTCTTTCCACTTTCAAAATTCCCAACCCCTCCTTTGTTCGCTCTGTACATCTGGGTCATTTAATCCCCGAATTTCTTCGCATCTTGCCTCATATTCCATCCAATTCTCGCTGTTTCAACGATCACGGTGTTGATCCTTGATGGGTTTTTCTCGTCGATCATAAACATACCCGGGTTTGTGAAAAAGGTTTTTCCTTTCCACGCGTCGCTTCACTTGTCATCGATCCTGAGCTCCATAGCTTGAAACGCTGTGGAACTGTGAACTTTGTTGCTCCTTTTCTTTTGTTTCCGTGTGTCAATTCAGCTTACGCCATAACTGGATCACATGAAAATGAAGCCTTCTTCTCCCAATGAAGAACATCATGACTTGGAAAATGCCAAGTCGGACAAAGATAAAGTAAGAACACCAAGAAATGGAAGGGGAGTTAAAGTCTACAATCAGGCCTTGTTGTCTGGACTTGCTTATTGTTTTTCCTCATGTGGCATGATATTGGTCAACAAGCTTGTACTTTCAAGCTATGATTTTAATGCGGGGATATCCTTGATGTTGTACCAGAATTTAATTTCAGTTGCTATTGTTTCCGTGTTGAGCCTTCTGGGTTTAGTTTCAACTGAGCCGCTGACGTGGAGATTGATCAAGGTCTGGTTGCCTGTGAATTTTATATTTGTTGGAATGCTCGTTACAAGCATGTTTAGTTTGAAATACATTAATGTAGCCATGGTGACAGTCCTGAAGAATGTTACTAATGTCATAACCGCCCTTGGTGAAATGTATTTGTTCAAGAAGCACCATGATGGTAAAGTCTGGGCATCTTTGTTTCTAATGATCATTTCAGCAATAACTGGAGGGATTACTGATCTCTCTTTCAATGCAGTTGGCTATGCTTGGCAGACACTAAACTGTTTCTTAACTGCATCATATTCTTTGATGCTCCAAAGGGTCATGGATACAGCAAAGCAAGTTACTAAATCTGGAAATTTAAATGAGTTTTCAATGGTCTTGTTGAACAACACCCTTTCTGTGCCTTTGGGAATTTTCCTGATTATTGTTTTCAATGAGATGGATTATCTCTTAAGCACGCCACTTCTGAGATTGCCTAGCTTTTGGTTGGTGATGACCTTTAGTGGATTTTTGGGTCTAGCAATCAGCTTCACATCCATGTGGTTTCTTCATCAGACTGGAGCTACAACTTATAGTCTTGTAGGTTCACTGAACAAGATACCACTTTCTATTGCTGGCATCCTTCTCTTCAAAGTTCCCACTAGTTTGGAGAACTCTGCTAGCATTTTGTTTGGTCTATTGGCAGGAGTGTTTTTTGCTAGAGCCAAAATCCGAGAGAGATCTCAATCCTGAAGAACAGTAAATGGAATTTGATTTCTGGGTTCAGTTGGACATTCAGTCCAAGTCTCTGAGGTGTTGTCAAGAGATGGCATCAGCTAAACTAAACTGACTCTCCCATTCTTCATATATCCAACTTGGTGATGGTTCATGATTCCTTCTCCAAGGGACAATTTTTGGTCCATGTTCGTTTGGATCTTTTGAGGAAGGGGCTGCTTGGATTGATTGCATTGGCTCAGACTGGGAGGAAAAATTGCCACTAATTTTGCATCATATGAGGCTAATCTTGAGAATCCTAACCAACAGATGTTACCAGCATTTCAAACAATTTATTAGTATGAGGTGCAAGCTAAT
>Glyma04g39070.1 sequence type=CDS gene model=Glyma04g39070 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAAAATGAAGCCTTCTTCTCCCAATGAAGAACATCATGACTTGGAAAATGCCAAGTCGGACAAAGATAAAGTAAGAACACCAAGAAATGGAAGGGGAGTTAAAGTCTACAATCAGGCCTTGTTGTCTGGACTTGCTTATTGTTTTTCCTCATGTGGCATGATATTGGTCAACAAGCTTGTACTTTCAAGCTATGATTTTAATGCGGGGATATCCTTGATGTTGTACCAGAATTTAATTTCAGTTGCTATTGTTTCCGTGTTGAGCCTTCTGGGTTTAGTTTCAACTGAGCCGCTGACGTGGAGATTGATCAAGGTCTGGTTGCCTGTGAATTTTATATTTGTTGGAATGCTCGTTACAAGCATGTTTAGTTTGAAATACATTAATGTAGCCATGGTGACAGTCCTGAAGAATGTTACTAATGTCATAACCGCCCTTGGTGAAATGTATTTGTTCAAGAAGCACCATGATGGTAAAGTCTGGGCATCTTTGTTTCTAATGATCATTTCAGCAATAACTGGAGGGATTACTGATCTCTCTTTCAATGCAGTTGGCTATGCTTGGCAGACACTAAACTGTTTCTTAACTGCATCATATTCTTTGATGCTCCAAAGGGTCATGGATACAGCAAAGCAAGTTACTAAATCTGGAAATTTAAATGAGTTTTCAATGGTCTTGTTGAACAACACCCTTTCTGTGCCTTTGGGAATTTTCCTGATTATTGTTTTCAATGAGATGGATTATCTCTTAAGCACGCCACTTCTGAGATTGCCTAGCTTTTGGTTGGTGATGACCTTTAGTGGATTTTTGGGTCTAGCAATCAGCTTCACATCCATGTGGTTTCTTCATCAGACTGGAGCTACAACTTATAGTCTTGTAGGTTCACTGAACAAGATACCACTTTCTATTGCTGGCATCCTTCTCTTCAAAGTTCCCACTAGTTTGGAGAACTCTGCTAGCATTTTGTTTGGTCTATTGGCAGGAGTGTTTTTTGCTAGAGCCAAAATCCGAGAGAGATCTCAATCCTGA >Glyma04g39070.2 sequence type=CDS gene model=Glyma04g39070 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAAAATGAAGCCTTCTTCTCCCAATGAAGAACATCATGACTTGGAAAATGCCAAGTCGGACAAAGATAAAGTAAGAACACCAAGAAATGGAAGGGGAGTTAAAGTCTACAATCAGGCCTTGTTGTCTGGACTTGCTTATTGTTTTTCCTCATGTGGCATGATATTGGTCAACAAGCTTGTACTTTCAAGCTATGATTTTAATGCGGGGATATCCTTGATGTTGTACCAGAATTTAATTTCAGTTGCTATTGTTTCCGTGTTGAGCCTTCTGGGTTTAGTTTCAACTGAGCCGCTGACGTGGAGATTGATCAAGGTCTGGTTGCCTGTGAATTTTATATTTGTTGGAATGCTCGTTACAAGCATGTTTAGTTTGAAATACATTAATGTAGCCATGGTGACAGTCCTGAAGAATGTTACTAATGTCATAACCGCCCTTGGTGAAATGTATTTGTTCAAGAAGCACCATGATGGTAAAGTCTGGGCATCTTTGTTTCTAATGATCATTTCAGCAATAACTGGAGGGATTACTGATCTCTCTTTCAATGCAGTTGGCTATGCTTGGCAGACACTAAACTGTTTCTTAACTGCATCATATTCTTTGATGCTCCAAAGGGTCATGGATACAGCAAAGCAAGTTACTAAATCTGGAAATTTAAATGAGTTTTCAATGGTCTTGTTGAACAACACCCTTTCTGTGCCTTTGGGAATTTTCCTGATTATTGTTTTCAATGAGATGGATTATCTCTTAAGCACGCCACTTCTGAGATTGCCTAGCTTTTGGTTGGTGATGACCTTTAGTGGATTTTTGGGTCTAGCAATCAGCTTCACATCCATGTGGTTTCTTCATCAGACTGGAGCTACAACTTATAGTCTTGTAGGTTCACTGAACAAGATACCACTTTCTATTGCTGGCATCCTTCTCTTCAAAGTTCCCACTAGTTTGGAGAACTCTGCTAGCATTTTGTTTGGTCTATTGGCAGGAGTGTTTTTTGCTAGAGCCAAAATCCGAGAGAGATCTCAATCCTGA
>Glyma04g39070.1 sequence type=predicted peptide gene model=Glyma04g39070 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MKMKPSSPNEEHHDLENAKSDKDKVRTPRNGRGVKVYNQALLSGLAYCFSSCGMILVNKLVLSSYDFNAGISLMLYQNLISVAIVSVLSLLGLVSTEPLTWRLIKVWLPVNFIFVGMLVTSMFSLKYINVAMVTVLKNVTNVITALGEMYLFKKHHDGKVWASLFLMIISAITGGITDLSFNAVGYAWQTLNCFLTASYSLMLQRVMDTAKQVTKSGNLNEFSMVLLNNTLSVPLGIFLIIVFNEMDYLLSTPLLRLPSFWLVMTFSGFLGLAISFTSMWFLHQTGATTYSLVGSLNKIPLSIAGILLFKVPTSLENSASILFGLLAGVFFARAKIRERSQS* >Glyma04g39070.2 sequence type=predicted peptide gene model=Glyma04g39070 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MKMKPSSPNEEHHDLENAKSDKDKVRTPRNGRGVKVYNQALLSGLAYCFSSCGMILVNKLVLSSYDFNAGISLMLYQNLISVAIVSVLSLLGLVSTEPLTWRLIKVWLPVNFIFVGMLVTSMFSLKYINVAMVTVLKNVTNVITALGEMYLFKKHHDGKVWASLFLMIISAITGGITDLSFNAVGYAWQTLNCFLTASYSLMLQRVMDTAKQVTKSGNLNEFSMVLLNNTLSVPLGIFLIIVFNEMDYLLSTPLLRLPSFWLVMTFSGFLGLAISFTSMWFLHQTGATTYSLVGSLNKIPLSIAGILLFKVPTSLENSASILFGLLAGVFFARAKIRERSQS*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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