Glyma04g39040 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma04g39040

Feature Type:	gene_model
Chromosome:	Gm04
Start:	45306333
stop:	45307231
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g39040

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G61750	AT	Annotation by Michelle Graham. TAIR10: RmlC-like cupins superfamily protein \| chr5:24812804-24813436 REVERSE LENGTH=210	SoyBase	E_val: 7.00E-37	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0048046	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: apoplast	SoyBase	N/A	ISS
GO:0030145	GO-mf	Annotation by Michelle Graham. GO Molecular Function: manganese ion binding	SoyBase	N/A	ISS
GO:0045735	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nutrient reservoir activity	SoyBase	N/A	ISS
PF00190	PFAM	Cupin	JGI		ISS
UniRef100_G7JBL3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Germin-like protein n=1 Tax=Medicago truncatula RepID=G7JBL3_MEDTR	SoyBase	E_val: 1.00E-68	ISS
UniRef100_I1JY16	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JY16_SOYBN	SoyBase	E_val: 2.00E-115	ISS

Expression Patterns of Glyma04g39040

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g39040

Paralog	Evidence	Comments
Glyma06g15930	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g39040 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments

References for Glyma04g39040

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma04g39040

Limit To All Plant Sequences

>Glyma04g39040.2   sequence type=CDS   gene model=Glyma04g39040   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAGATAATAAAATCCCATTCTTCCTTCTTCCTAATGTTTTTTATAGCCATTATTACCTGCAAACATGTTTCTTTAGCAGAATGTGATAATGTGAAGGACTATTGCCCTACAATTCCACCCCAAAAGCAAACCATATTCCTAAATGGCTTCCCCAGCTGCGAGAACCCAAATAACACAATTGCACATGATTTCAAGAGCATGGAACTAAGCCAGTCTGGTTCAAGAGACAAGTTTGTTCACCTCCACAATCACCCTAGAGCCACCGAGATGATCTATGTCAGACAAGGTGAGGTGGTGGCTGCGTTTCTCAACACTCAGAACCAGCTCTTCCAGAAGAATCTCAGGGCTGGTGATGTGTTTGTGATCCCCAAAGGCTTGTTTCACTTCTTGTTGAATCGTGGTGCACAAGTTGCAACTGTGTTCTCTGCGTTTAACAGCCAAAATCCCGGGTTGGGATCACTCACTTCTATTCCTTCTGACACCTTGGAATCGGTTGAGAAGCTTAAGAGGAAGGTTATCTCACTTTCTGAAGTAGAACTTAATGAATTATCATTTGAGTTTGCTGGTAGAAAAATTAGTGAACATGTATATAAGTAG

Predicted protein sequences of Glyma04g39040

Limit To All Plant Sequences

>Glyma04g39040.2   sequence type=predicted peptide   gene model=Glyma04g39040   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKIIKSHSSFFLMFFIAIITCKHVSLAECDNVKDYCPTIPPQKQTIFLNGFPSCENPNNTIAHDFKSMELSQSGSRDKFVHLHNHPRATEMIYVRQGEVVAAFLNTQNQLFQKNLRAGDVFVIPKGLFHFLLNRGAQVATVFSAFNSQNPGLGSLTSIPSDTLESVEKLKRKVISLSEVELNELSFEFAGRKISEHVYK*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain