Glyma04g39021 - SoyBase

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Report for Sequence Feature Glyma04g39021

Feature Type:	gene_model
Chromosome:	Gm04
Start:	45283528
stop:	45285561
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g39021

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G19380	AT	Annotation by Michelle Graham. TAIR10: plant U-box 25 \| chr3:6714602-6715867 REVERSE LENGTH=421	SoyBase	E_val: 6.00E-41	ISS
GO:0010200	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to chitin	SoyBase	N/A	ISS
GO:0016567	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein ubiquitination	SoyBase	N/A	ISS
GO:0000151	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: ubiquitin ligase complex	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0004842	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ubiquitin-protein ligase activity	SoyBase	N/A	ISS
PTHR22849	Panther	WDSAM1 PROTEIN	JGI		ISS
PF04564	PFAM	U-box domain	JGI		ISS
UniRef100_G7JBL7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: U-box domain-containing protein n=1 Tax=Medicago truncatula RepID=G7JBL7_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI0002339EF9	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0002339EF9 related cluster n=1 Tax=unknown RepID=UPI0002339EF9	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma04g39021

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma04g39021 not represented in the dataset	Glyma04g39021 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g39021

Paralog	Evidence	Comments
Glyma06g15960	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g39021 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g212300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g39021

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma04g39021

Limit To All Plant Sequences

>Glyma04g39021.1   sequence type=CDS   gene model=Glyma04g39021   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAACGAAGCCCAAATTGAAATTACCATTCCTCACTTGTTCAGATGCCCCATCAGCTTGGACTTGTTCGAAGATCCAGTGACTTTGTGCACAGGCCAAACCTATGACAGATCAAGCATAGAGAAATGGTTTTCCACAGGAAATCTCACATGCCCCGTGACAATGCAGAAGCTTCATGATCCATCCATTGTTCCCAACCACACTCTTCGCCACTTGATCGACCAGTGGCTCCAATTGGGTCCCCAATTTGGTAACTCTGCCACTATTGATTATTTAGCTGCACTTAAGCACACCCTTGAATCACCCCAATTGGAAAACAAGCTCCAAGCACTCGAGAAAATTAGAGTCCTCTCTGATGAGTATTGCTCCTTCAGAAAATCTTACTTCCACCAACTGAGTTTCTTGCCACTGCTTTTGGAACTAGTTTTTGGTTCTCGGCTCTCAAAAAGTCACAACAGGGAGTTCACTGAGCTAGCACTTTCTTGCATTCTAAAGCTGTTGCCTCTTGTGAGTTTGGAGCCTCTAAATATGATCAAAGATGAGTCTAAGCTAGCAACTTTTTTGCTACTATTTGAAAAGGGAACTAGCTCGGTTAAGACTAGTCTTTGCCATATCATAGATTCAATAGCATCACCACAAACAGAAGAGGTATGTCACATGCTTGGACACTCTCACAAACTAGTGCATGAGATCGTTGTACTTGTTCGCCAAAATTGTGAGGTTTCCAAGGTTGCAATTAAGGCCATGTTAGCATTATGTTCCTTGCAATCTAACAGAGAGAATTTGGTGAGGGAAGGAGCAATTGATGGGGTCATAACATACATTTCAGGTTGTGAAACAAGGCAGAAGAACGCTGCTCCATTGGCGATGGCAATAATAAAGAAGCTTTTGGTGCTAGAGAGTGCTAAAGAGGCGTTGGTGAATCACCCTAATGGAGTTGAAACTCTGGTGAAGATGGTTTTCAGGGTGTGCAATCAAGAGTGTAGTGAGAGTGCTGTTGGGATACTTGCAATTATTTGTTGTGATTTTGGGCGTGCAAGAGAGGAAGCAATTGAAGCTGGAGTTTTGACTCAGTTGCTGTTTCTTCTGCAGAGTCAGTGTGGCACCAAAACTAAAACAAAGGCAAGAATGCTGCTCAAGTTGCTAAGATCCAAGTGGATTGAGGAACCAAAACAGGTGTAG

Predicted protein sequences of Glyma04g39021

Limit To All Plant Sequences

>Glyma04g39021.1   sequence type=predicted peptide   gene model=Glyma04g39021   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNEAQIEITIPHLFRCPISLDLFEDPVTLCTGQTYDRSSIEKWFSTGNLTCPVTMQKLHDPSIVPNHTLRHLIDQWLQLGPQFGNSATIDYLAALKHTLESPQLENKLQALEKIRVLSDEYCSFRKSYFHQLSFLPLLLELVFGSRLSKSHNREFTELALSCILKLLPLVSLEPLNMIKDESKLATFLLLFEKGTSSVKTSLCHIIDSIASPQTEEVCHMLGHSHKLVHEIVVLVRQNCEVSKVAIKAMLALCSLQSNRENLVREGAIDGVITYISGCETRQKNAAPLAMAIIKKLLVLESAKEALVNHPNGVETLVKMVFRVCNQECSESAVGILAIICCDFGRAREEAIEAGVLTQLLFLLQSQCGTKTKTKARMLLKLLRSKWIEEPKQV*

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