SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G09300 | AT | Annotation by Michelle Graham. TAIR10: Thiamin diphosphate-binding fold (THDP-binding) superfamily protein | chr5:2884282-2886797 REVERSE LENGTH=472 | SoyBase | E_val: 0 | ISS |
| GO:0008152 | GO-bp | Annotation by Michelle Graham. GO Biological Process: metabolic process | SoyBase | N/A | ISS |
| GO:0005739 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion | SoyBase | N/A | ISS |
| GO:0003863 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: 3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) activity | SoyBase | N/A | ISS |
| GO:0016624 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor | SoyBase | N/A | ISS |
| KOG1182 | KOG | Branched chain alpha-keto acid dehydrogenase complex, alpha subunit | JGI | ISS | |
| PTHR11516 | Panther | PYRUVATE DEHYDROGENASE E1 COMPONENT, ALPHA SUBUNIT (BACTERIAL AND ORGANELLAR) | JGI | ISS | |
| PTHR11516:SF1 | Panther | BRANCHED CHAIN KETO ACID DEHYDROGENASE | JGI | ISS | |
| PF00676 | PFAM | Dehydrogenase E1 component | JGI | ISS | |
| UniRef100_G7JBL9 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: 2-oxoisovalerate dehydrogenase subunit alpha n=1 Tax=Medicago truncatula RepID=G7JBL9_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI0002338328 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI0002338328 related cluster n=1 Tax=unknown RepID=UPI0002338328 | SoyBase | E_val: 0 | ISS |
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Glyma04g39001 not represented in the dataset |
Glyma04g39001 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma06g15980 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.04g212100 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma04g39001.1 sequence type=CDS gene model=Glyma04g39001 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAGGAAATTCACCACCATATTCTCCCACATCAAATCAACAAAGATGAACTTCTCCGTTTCGCTTCTTCATCGGAGCTCTCCATTTTGCCCCAATCAACCACCACACCCTAATTTCAAGAACCTCACATGGCAGAATCGCGATTCACTACTATTATTTCCCCTTCTCTGTTCGCGCCACTTTGCCTCCACTACCGCGCAGAATCCTTCCACATTGAATGCTCTTCAGGATCATTATCAGGCCATTGATTTTCCTGGAGGAGCAGTACAATTCATCCCTGAAATGAGGTTTATATCCGAATCACCTAAAGAGAGAATACCTTGCTACCGTGTCCTTGATGATAATGGGCAACCAATTTTGGGCCATAATTTTGTGCAGGTCAGCAAGGAAGTTGCTGTTAAGATGTATACTGACATGGTCACTCTCCGATCTATGGACACTATCTTCTATGAAGCACAAAGGCAAGGTAGAATATCATTTTATGTGACAGCAATTGGGGAGGAGGCTATCAATGTTGCTTCAGCTGCAGCTCTTGCCATGGACGATGTTGTTTTCCCTCAGTATAGGGAAGCGGGAGTCTTGTTATGGCGTGGTTTCACTTTGCAAGAATTTGCAAACCAGTTATTTTCCAATATATATGATTATGGGAAAGGAAGGCAGATGCCAGCTCATTATGGGTCCAAAAAGCACAATTACTTTACAGTAGCATCAACTATTGCTACACAAATTTCCCATGCTGTTGGAGCCGCTTATTCCTTAAAGATGGATAAAAAGGATGCATGTGCCGTCACTTACTTCGGTGATGGTGGCTCAAGTGAGGGTGATTTCCACGCTGCCTTAAATTTTGCAGCAGTTTTGGAGGCCCCAGTTATTTTTATATGCCGGAACAATGGATGGGCTATCAGCACACCCATTTCAGATCAGTTTCGAAGTGATGGTGTTGTTGTGAAAGGGCAGGCATATGGAGTTCGTAGCATTCGTGTAGATGGCAATGATGCCCTGGCTATCTATAGTGCTATTCAAGCTGCTCGTCAAATGGCAATTACTGAAGAGAGACCAATTCTAATAGAAGCTCTTACATATAGAGTTGGACACCACACCACATCAGATGACTCTACCAAGTATCGTCCAGCGAATGAGATTGAATGGTGGAGAGTGGCACGTGATCCTGTGGTTAGATTTAGAAAGTGGATAGAAAAGCATGGCTGGTGGAATGATATGGCTGAGTCAGAGCTTATAAACAATTTGAGACAGCAGCTTCTACATACAATTCAAGAAGCAGAGGGTGTAGAAAAACCTCCACTTGCAGATAGTTTTAGTGATGTTTATGATGTCGCTCCTTCTAATCTCCGTGAACAGGAGCAATGGCTGAAGGAGATTGTAAGAAAACAACCACAAGAGTATCCAACAAATATTTCTGTGTAG
>Glyma04g39001.1 sequence type=predicted peptide gene model=Glyma04g39001 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MRKFTTIFSHIKSTKMNFSVSLLHRSSPFCPNQPPHPNFKNLTWQNRDSLLLFPLLCSRHFASTTAQNPSTLNALQDHYQAIDFPGGAVQFIPEMRFISESPKERIPCYRVLDDNGQPILGHNFVQVSKEVAVKMYTDMVTLRSMDTIFYEAQRQGRISFYVTAIGEEAINVASAAALAMDDVVFPQYREAGVLLWRGFTLQEFANQLFSNIYDYGKGRQMPAHYGSKKHNYFTVASTIATQISHAVGAAYSLKMDKKDACAVTYFGDGGSSEGDFHAALNFAAVLEAPVIFICRNNGWAISTPISDQFRSDGVVVKGQAYGVRSIRVDGNDALAIYSAIQAARQMAITEERPILIEALTYRVGHHTTSDDSTKYRPANEIEWWRVARDPVVRFRKWIEKHGWWNDMAESELINNLRQQLLHTIQEAEGVEKPPLADSFSDVYDVAPSNLREQEQWLKEIVRKQPQEYPTNISV*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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