SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G24230 | AT | Annotation by Michelle Graham. TAIR10: Leucine-rich repeat protein kinase family protein | chr2:10301979-10304540 REVERSE LENGTH=853 | SoyBase | E_val: 3.00E-56 | ISS |
| GO:0006468 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein phosphorylation | SoyBase | N/A | ISS |
| GO:0007169 | GO-bp | Annotation by Michelle Graham. GO Biological Process: transmembrane receptor protein tyrosine kinase signaling pathway | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0004672 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein kinase activity | SoyBase | N/A | ISS |
| GO:0004674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine kinase activity | SoyBase | N/A | ISS |
| GO:0005524 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATP binding | SoyBase | N/A | ISS |
| GO:0016772 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring phosphorus-containing groups | SoyBase | N/A | ISS |
| PTHR24420 | Panther | FAMILY NOT NAMED | JGI | ISS | |
| PTHR24420:SF73 | Panther | SUBFAMILY NOT NAMED | JGI | ISS | |
| PF00560 | PFAM | Leucine Rich Repeat | JGI | ISS | |
| UniRef100_G7JGQ5 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Receptor-like protein kinase n=1 Tax=Medicago truncatula RepID=G7JGQ5_MEDTR | SoyBase | E_val: 3.00E-55 | ISS |
| UniRef100_I1MT27 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MT27_SOYBN | SoyBase | E_val: 2.00E-81 | ISS |
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Glyma04g38905 not represented in the dataset |
Glyma04g38905 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.04g211400 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma04g38905.1 sequence type=CDS gene model=Glyma04g38905 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGATGGGTTTAGCATCTTCCCAAGGCTACAACTTCTCTGCTTCTGTCTGTTCATGGAGAGGGGTTTCTTGTGATGCCGATAGAGAACATGTTGTTGACTTAGTCTTTTCTGGTATGGACCTCTCTGCCACTATACCTGATAACACCATAGGCAAGCTGGGAAAACTGCAATTTTTGGATCTTAGCCACAACAAAATCACTGACTTGCCTTTAGATTTTTGGAGTTTGAGCACTGTCAAGAGCCTTAACCTCTCCTCCAATCAGATTTCTGGCTCATTGACTAACAACATTGGCAACTTTGGTTTGCTAGAAAGCATTGACTTGTCCAGCAACAATTTCTCAGAGGAAATTCCTGAAGCTGTTAGCTCATTGCTGAGTCTAAGAGTCCTCAAACTTGACCAAAACAGGTTTCGGATTTCTTTACAAGGTTAA
>Glyma04g38905.1 sequence type=predicted peptide gene model=Glyma04g38905 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MMGLASSQGYNFSASVCSWRGVSCDADREHVVDLVFSGMDLSATIPDNTIGKLGKLQFLDLSHNKITDLPLDFWSLSTVKSLNLSSNQISGSLTNNIGNFGLLESIDLSSNNFSEEIPEAVSSLLSLRVLKLDQNRFRISLQG*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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