Report for Sequence Feature Glyma04g38870
Feature Type: gene_model
Chromosome: Gm04
Start: 45191399
stop: 45197250
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma04g38870
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT5G64030 AT
Annotation by Michelle Graham. TAIR10: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr5:25624965-25628257 FORWARD LENGTH=829
SoyBase E_val: 0 ISS
GO:0005768 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: endosome
SoyBase N/A ISS
GO:0005794 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus
SoyBase N/A ISS
GO:0005802 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: trans-Golgi network
SoyBase N/A ISS
GO:0008168 GO-mf
Annotation by Michelle Graham. GO Molecular Function: methyltransferase activity
SoyBase N/A ISS
PTHR10108 Panther
METHYLTRANSFERASE
JGI ISS
PTHR10108:SF55 Panther
PUTATIVE EARLY-RESPONSIVE TO DEHYDRATION STRESS PR
JGI ISS
PF03141 PFAM
Putative methyltransferase
JGI ISS
UniRef100_G7JC39 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Ankyrin-like protein n=1 Tax=Medicago truncatula RepID=G7JC39_MEDTR
SoyBase E_val: 0 ISS
UniRef100_UPI00023397FC UniRef
Annotation by Michelle Graham. Best UniRef hit: UPI00023397FC related cluster n=1 Tax=unknown RepID=UPI00023397FC
SoyBase E_val: 0 ISS
Expression Patterns of Glyma04g38870
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma04g38870
Paralog Evidence Comments
Glyma06g16050 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma04g38870 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.04g211300 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma04g38870
Coding sequences of Glyma04g38870
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma04g38870.1 sequence type=CDS gene model=Glyma04g38870 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGCTTTGGGGAAATATGCTAGAGTAGATGGTAGAAGATCGTCGAGTTGGTGTTCAACGGTGACTGTTGTCATGTTTGTGGCTCTGTGCTTGGTTGGGGTTTGGATGATGACATCATCTTCAGTTGTTCCTGTGCGTAACGGAGACGAAGCCCAGGAGAATAAGAACCAAGTGAAAGAACAAGCAGAGGTGAAAGAAGCAGTGAGTGAGGTCAGCAATAGCAATACGCGGCAGTTTGAAGATAATCCAGGTGATTTGCCTGAGGATGCAACCAAGGGGGACAGCAATGTAACCTTTGAAGACAACTCAAACTCTTCAGATAAACAAGAGAAGTTGGAGGAAAATCCTGTAGAGAGGTCTTCTGATGATACAAAGACAGAAGACGTGGATGATAAGAAAACTGAGGAGGAAGGTTCTAATACAGAAAACGAATCAAACTCAGACTCTGTGGAAAATAACAAAGACAGTGATGAGACTTCCACTAAGGAATCTGATTCTGATGAGAGTGAGAAGAAGCCTGATTCTGATGATAACAAGAAGTCTGATTCAGATGAAAGTGAAAAGCAATCTGATGACTCTGATGAAACAACAAATACTAGGATAGAGGAGAAGGTGGAAGAAAGCGATAACAAGGAATCTGATGAAAACTTTATTGAGAAGAATACAAATGATGATACCAAACAGAAGACTTCAAAGGAGGTATATCCTTCTGGGGCTCAGTCTGAGCTTCACGAAGAAAGTACTACAGAAACTGGGTCTTGGTCAACTCAGGCAGCAGAGTCTAAGAATGAAAAGGAGTCTCAAGAATCCTCCAAGCAGGCAACTGGATACAAGTGGAAGCTTTGCAATGTCACTGCTGGTCCTGATTTTATCCCATGCCTTGACAACTGGAAAGCTATTAGGAGTCTCCGGAGTACTAAACACTATGAACATCGAGAAAGACACTGTCCTGAAGAACCTCCTACCTGCCTTGTTCCTGTTCCTGAAGGATATAAACGCCCAATTGAGTGGCCTAAAAGCAGAGAGAAGATATGGTATTACAATGTTCCACACACAAAGCTTGCTAAAGTTAAGGGCCACCAGAATTGGGTGAAAGTTACGGGCGAGTACCTTACTTTTCCTGGTGGTGGAACCCAATTCAAACATGGGGCACTTCATTACATTGACTTTATACAAGAGACTGAACCTGACATTGCTTGGGGCAAACGCACGCGCGTTATACTAGATGTTGGATGTGGTGTTGCCAGCTTTGGAGGTTTTCTCTTTGATAGAGATGTACTTGCAATGTCATTAGCACCAAAGGATGAACATGAAGCTCAGGTACAATTTGCACTTGAAAGGGGGATTCCTGCTATATCTGCTGTGATGGGCACAAAGAGGCTTCCCTTCCCTGGGAAAGTATTTGATGTAGTCCACTGTGCACGATGTAGAGTTCCGTGGCATATAGAAGGTGGTAAACTTCTTTTGGAGCTAAATAGAGTATTGAGACCTGGAGGTTTTTTTGTATGGTCTGCTACTCCAATTTATCAGAAGCTTCCTGAAGATGTTGAAATATGGAAGGCCATGAAGACACTAACAAAAGCCATGTGCTGGGAAGTTGTGTCGATCAGCAAGGATCAAGTAAATGGAGTAGGTGTAGCTGTATACAAGAAGCCAACTTCTAATGAGTGTTACGAGCAACGTTCAAAGAATGAGCCACCGCTGTGTCCAGACTCTGATGATCCTAATGCAGCATGGAACATTAAATTGCAAGCTTGCATGCACAAAGTGCCAGCTAGTTCAAAGGAACGAGGCTCAAAATTGCCTGAGCTGTGGCCAGCCAGACTGACCAAAGTGCCTTATTGGTTGTTGAGTTCCCAAGTTGGAGTTTATGGAAAGCCAGCCCCTGAAGATTTCACTGCTGATTATGAACACTGGAAACGTGTAGTGTCCCAGTCTTATCTAGATGGGATGGGAATTAAATGGTCAAATGTGCGCAATGTCATGGATATGAGGTCTATCTATGGAGGATTTGCTGCAGCTTTGAGAGATTTGAATGTTTGGGTCATGAATGTGGTTACAATAGACTCCCCTGATACTCTTCCCATTATTTTTGAACGAGGTCTGTTCGGTATATATCATGATTGGTGTGAATCATTTAGCACCTATCCTAGGACCTATGATCTCCTCCATGCTGATCATCTGTTTTCAAAGCTTAAGAAAAGGTGCAATTTGGCAGCTGTAGTGGCCGAGGCTGATCGGATTCTTAGGCCTGAAGGAAAACTTATTGTTCGTGACACTGTGGAGATCGTTGAAGAGCTTGAGAGCATGGCTAGGTCTATGCAATGGAAGGTTCGCATGACTTACTCCAAGGATAAGGAGGGCTTGTTATGTGTGGAGAAGTCCAAGTGGCGACCTAAGGAGCAGGAAAAGCTCGAGTATGCTATTGTTTAA
Predicted protein sequences of Glyma04g38870
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma04g38870.1 sequence type=predicted peptide gene model=Glyma04g38870 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MALGKYARVDGRRSSSWCSTVTVVMFVALCLVGVWMMTSSSVVPVRNGDEAQENKNQVKEQAEVKEAVSEVSNSNTRQFEDNPGDLPEDATKGDSNVTFEDNSNSSDKQEKLEENPVERSSDDTKTEDVDDKKTEEEGSNTENESNSDSVENNKDSDETSTKESDSDESEKKPDSDDNKKSDSDESEKQSDDSDETTNTRIEEKVEESDNKESDENFIEKNTNDDTKQKTSKEVYPSGAQSELHEESTTETGSWSTQAAESKNEKESQESSKQATGYKWKLCNVTAGPDFIPCLDNWKAIRSLRSTKHYEHRERHCPEEPPTCLVPVPEGYKRPIEWPKSREKIWYYNVPHTKLAKVKGHQNWVKVTGEYLTFPGGGTQFKHGALHYIDFIQETEPDIAWGKRTRVILDVGCGVASFGGFLFDRDVLAMSLAPKDEHEAQVQFALERGIPAISAVMGTKRLPFPGKVFDVVHCARCRVPWHIEGGKLLLELNRVLRPGGFFVWSATPIYQKLPEDVEIWKAMKTLTKAMCWEVVSISKDQVNGVGVAVYKKPTSNECYEQRSKNEPPLCPDSDDPNAAWNIKLQACMHKVPASSKERGSKLPELWPARLTKVPYWLLSSQVGVYGKPAPEDFTADYEHWKRVVSQSYLDGMGIKWSNVRNVMDMRSIYGGFAAALRDLNVWVMNVVTIDSPDTLPIIFERGLFGIYHDWCESFSTYPRTYDLLHADHLFSKLKKRCNLAAVVAEADRILRPEGKLIVRDTVEIVEELESMARSMQWKVRMTYSKDKEGLLCVEKSKWRPKEQEKLEYAIV*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
