Glyma04g38850 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma04g38850

Feature Type:	gene_model
Chromosome:	Gm04
Start:	45178224
stop:	45182931
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g38850

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G51810	AT	Annotation by Michelle Graham. TAIR10: gibberellin 20 oxidase 2 \| chr5:21055389-21056746 REVERSE LENGTH=378	SoyBase	E_val: 1.00E-137	ISS
GO:0009639	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to red or far red light	SoyBase	N/A	ISS
GO:0009686	GO-bp	Annotation by Michelle Graham. GO Biological Process: gibberellin biosynthetic process	SoyBase	N/A	ISS
GO:0009739	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to gibberellin stimulus	SoyBase	N/A	ISS
GO:0009826	GO-bp	Annotation by Michelle Graham. GO Biological Process: unidimensional cell growth	SoyBase	N/A	ISS
GO:0009908	GO-bp	Annotation by Michelle Graham. GO Biological Process: flower development	SoyBase	N/A	ISS
GO:0055114	GO-bp	Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process	SoyBase	N/A	ISS
GO:0080167	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to karrikin	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005506	GO-mf	Annotation by Michelle Graham. GO Molecular Function: iron ion binding	SoyBase	N/A	ISS
GO:0016491	GO-mf	Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity	SoyBase	N/A	ISS
GO:0016706	GO-mf	Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	SoyBase	N/A	ISS
GO:0045544	GO-mf	Annotation by Michelle Graham. GO Molecular Function: gibberellin 20-oxidase activity	SoyBase	N/A	ISS
KOG0143	KOG	Iron/ascorbate family oxidoreductases	JGI		ISS
PTHR10209	Panther	FE(II)/ ASCORBATE OXIDASE SUPERFAMILY	JGI		ISS
PTHR10209:SF55	Panther	OXIDOREDUCTASE, 2OG-FE(II) OXYGENASE FAMILY PROTEI	JGI		ISS
PF03171	PFAM	2OG-Fe(II) oxygenase superfamily	JGI		ISS
UniRef100_C6TI01	UniRef	Annotation by Michelle Graham. Best UniRef hit: Putative uncharacterized protein n=1 Tax=Glycine max RepID=C6TI01_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_G7JC43	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Gibberellin 20 oxidase n=1 Tax=Medicago truncatula RepID=G7JC43_MEDTR	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma04g38850

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g38850

Paralog	Evidence	Comments
Glyma06g16080	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g38850 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g211100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g38850

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma04g38850

Limit To All Plant Sequences

>Glyma04g38850.1   sequence type=CDS   gene model=Glyma04g38850   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCTCCTCCCCTAATGGAATCAAGTGCTTCCACTCTAGTAATTTACCCTGCATCACAGCCACAACAAGAGCCCAAAAATGAGAATAATGGTGGCATAGTTTTTGGTTCAAATTTGCAGCAAATGCAAGGGGAAATGCCCAAAGAGTTCCTATGGCCTTCTAGGGACTTGGTTGACACCACCCAAGAGGAGCTGAAGGAACCCCTTGTGGACTTAGCAATCTTTAAGAATGGTGATGAGAAAGCCATTGCTAATGCAGCAGAGCTTGTGAGAACTGCCTGCTTGAAGCATGGGTTCTTCCAAGTGATAAACCATGGTGTGGACCCAGATCTCATTGATGCTGCATATCATGAAATTGATTCCATTTTTAAGCTCCCATTGAGCAAAAAGATGGGTGCTAAGAGAAAACCTGGTGGTGTCTCAGGGTACTCTGGTGCTCATGCAGATCGTTATTCGTCCAAGTTGCCATGGAAAGAGACGTTTTCTTTCCTCTATGATCACCAAAGCTTCTCCAACTCCCAGATTGTTGACAATTTCAAGTCTGTATTAGGCGAGGATCTTCAACACACAGGGAGGGTTTATCAAAAGTACTGTGAAGCAATGAAGGATTTATCTTTAGTAATTATGGAGCTCTTGGCTATTAGTTTGGGTGTGGATCGTGGACATTATCGAAGATTTTTTGAAGATGGTGACTCAATAATGAGGTGCAACTATTATCCACCATGCAACAGTGCCAACCTCACCTTAGGCACTGGCCCTCACACTGATCCAACCTCACTAACCATTCTTCATCAAGACCAAGTTGGAGGTTTAGAAGTTTTTGTAGATAACAAATGGTTCGCTGTTCGCCCTCGATCTGAAGCCCTAGTCATAAACATAGGTGACACTTTCATGGCTTTGTCAAATGGGAGATACAAGAGTTGTCTACACAGGGCATTGGTGAACACATACAGGGAGAGAAGGTCCCTGGTTTACTTTGTGTGTCCAAGAGAAGACAAAATAGTGAGGCCCCCAGACAATCTGTTATGCAGAAATGAGGAAAGGAAGTACCCTGATTTCACATGGTCCAATTTGTTTGAATTTACACAGAAGCACTATAGGGCTGATGTTGCTACCCTCCAAAGCTTCATTGAGTGGCAGCAATGCTCTAATTCCAAGTCCAAGCCATCCAACTTCTAG

Predicted protein sequences of Glyma04g38850

Limit To All Plant Sequences

>Glyma04g38850.1   sequence type=predicted peptide   gene model=Glyma04g38850   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSPPLMESSASTLVIYPASQPQQEPKNENNGGIVFGSNLQQMQGEMPKEFLWPSRDLVDTTQEELKEPLVDLAIFKNGDEKAIANAAELVRTACLKHGFFQVINHGVDPDLIDAAYHEIDSIFKLPLSKKMGAKRKPGGVSGYSGAHADRYSSKLPWKETFSFLYDHQSFSNSQIVDNFKSVLGEDLQHTGRVYQKYCEAMKDLSLVIMELLAISLGVDRGHYRRFFEDGDSIMRCNYYPPCNSANLTLGTGPHTDPTSLTILHQDQVGGLEVFVDNKWFAVRPRSEALVINIGDTFMALSNGRYKSCLHRALVNTYRERRSLVYFVCPREDKIVRPPDNLLCRNEERKYPDFTWSNLFEFTQKHYRADVATLQSFIEWQQCSNSKSKPSNF*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain