SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G17850 | AT | Annotation by Michelle Graham. TAIR10: Sodium/calcium exchanger family protein | chr5:5899253-5900932 FORWARD LENGTH=559 | SoyBase | E_val: 6.00E-110 | ISS |
| GO:0006812 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cation transport | SoyBase | N/A | ISS |
| GO:0035725 | GO-bp | Annotation by Michelle Graham. GO Biological Process: sodium ion transmembrane transport | SoyBase | N/A | ISS |
| GO:0055085 | GO-bp | Annotation by Michelle Graham. GO Biological Process: transmembrane transport | SoyBase | N/A | ISS |
| GO:0016021 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane | SoyBase | N/A | ISS |
| GO:0005432 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: calcium:sodium antiporter activity | SoyBase | N/A | ISS |
| GO:0015491 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: cation transport | SoyBase | N/A | ISS |
| KOG2399 | KOG | K+-dependent Na+:Ca2+ antiporter | JGI | ISS | |
| PTHR12266 | Panther | NA/CA EXCHANGER | JGI | ISS | |
| PF01699 | PFAM | Sodium/calcium exchanger protein | JGI | ISS | |
| UniRef100_G7L1K1 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Cation/calcium exchanger n=1 Tax=Medicago truncatula RepID=G7L1K1_MEDTR | SoyBase | E_val: 2.00E-149 | ISS |
| UniRef100_UPI0002339EF5 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI0002339EF5 related cluster n=1 Tax=unknown RepID=UPI0002339EF5 | SoyBase | E_val: 0 | ISS |
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Glyma04g38821 not represented in the dataset |
Glyma04g38821 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma06g16100 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.04g210900 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma04g38821.1 sequence type=CDS gene model=Glyma04g38821 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCCATCACAGTTTTTGTGTCCAAAAGGATGGGATACACCTTGTTCTTGAACACTTGTTTCCTCGTGATTTGTTCCTTCATGATTGTTCATTTCCACACCCCAGATAGCTTAGAGAGCTTAGGTGACTACAAAGCCAAGTGCTTGTACCTGAAATCCAATGACCCTTGTGCCTGTCAGGGCTATATTGATTATCTCTACCTTTTCTATTGCAAATTTGGGAAATTCCCTTCATTGGGTTACACCCTTTTGTTTCTTTGGCTCCTGTTACTAAGGTTGTCCCCTACAATTGCTGGAGTCACCCTCCTCTCTCTTGGCAATGGTGCCCCTGACGTTTTCTCTAGCCTTGTCTCCTTCCAGGAAAGCGGGACACGCGACATGGGCTTTAACACGGTTCTCGGGGGTGTTTCCTTTGTGTCCTGTGTTGTGGTGGGGAGCGTGAGCATTGCAATACGTCAAAGTGGGGTTCAAGTTGCCAAGTCTGCGTTTGTGAGAGATGTTTATTTTCTCCTTTTTGTTGTTCTGGCCTTGTTTGCAATTGGTTTTACTTTGATATATGTGGTGTATGTAGTCATTGTTTATGCCTCTTTTACCCGATGGAAGGAAGGTGGTGATGATGATGAAAGGGGTGGTATTGGTATTTCAGATTGTGACAATGATTTGAGTTTGGGTGTGCCTCTTCTTAATGGTGCTCAAGAATATGATTTAAATATCGAGAAAGATTACTGTTGTATGAGATACTCGATGTCCGATGTGGGACTTGGATATTTTTTAACAATGTCCCTTTACTTGCCTAGGAGATTGACAATTCCTGTTGTGTGCGAAGAGAGATGGTCAAAGGTGTATGCAGTTTCTTCAGTTTTACTAGCTCCAAACCTTATTGTTTATGGAATTGGAATCTTGGTTGGAACTATACTTGGTGTGATTGCATTTTTCACAACCAAAATGTCAGGGTCACCAGAGAAGTGCTTATTTCCTTGGCTTGCAGGTGGGTTTGTGATGAGCGTGACATGGAGCTACATCATAGCTCAAGAGTTGGTAGGTTTGCTATTCCTGGCTTGGGGGAACTCACTTGGGGATTTGATGACAAACTTAACGATGGCTTTAAATGGTGGACCAGAGGGTGCTCAAGTAGCAATGTCTTGTTGCTATGCTGGTTCCATCTTCGATACCCTCACTGGTTTGGGCTTGTCTCTTGTAACTTACCCATATCTCTGGGAAACAATGGTGTTTTTGGTGGCTGGATTAGTTTGGGCACTTGTGGTTTTGAGAAAAACAGATATGAAGCTTGATGGACTCTTGGGAGGAGGGCTTTTATTTGTTTACTTCCTTTCTCTGTTTATAAGGTTGATTCAGACAAAAGGGTCTCTCCAATAG
>Glyma04g38821.1 sequence type=predicted peptide gene model=Glyma04g38821 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAITVFVSKRMGYTLFLNTCFLVICSFMIVHFHTPDSLESLGDYKAKCLYLKSNDPCACQGYIDYLYLFYCKFGKFPSLGYTLLFLWLLLLRLSPTIAGVTLLSLGNGAPDVFSSLVSFQESGTRDMGFNTVLGGVSFVSCVVVGSVSIAIRQSGVQVAKSAFVRDVYFLLFVVLALFAIGFTLIYVVYVVIVYASFTRWKEGGDDDERGGIGISDCDNDLSLGVPLLNGAQEYDLNIEKDYCCMRYSMSDVGLGYFLTMSLYLPRRLTIPVVCEERWSKVYAVSSVLLAPNLIVYGIGILVGTILGVIAFFTTKMSGSPEKCLFPWLAGGFVMSVTWSYIIAQELVGLLFLAWGNSLGDLMTNLTMALNGGPEGAQVAMSCCYAGSIFDTLTGLGLSLVTYPYLWETMVFLVAGLVWALVVLRKTDMKLDGLLGGGLLFVYFLSLFIRLIQTKGSLQ*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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