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Report for Sequence Feature Glyma04g38750

Feature Type:gene_model
Chromosome:Gm04
Start:45086209
stop:45090649
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G09260AT Annotation by Michelle Graham. TAIR10: vacuolar protein sorting-associated protein 20.2 | chr5:2876797-2878355 FORWARD LENGTH=216 SoyBaseE_val: 6.00E-115ISS
GO:0006499GO-bp Annotation by Michelle Graham. GO Biological Process: N-terminal protein myristoylation SoyBaseN/AISS
GO:0015031GO-bp Annotation by Michelle Graham. GO Biological Process: protein transport SoyBaseN/AISS
GO:0016192GO-bp Annotation by Michelle Graham. GO Biological Process: vesicle-mediated transport SoyBaseN/AISS
GO:0000815GO-cc Annotation by Michelle Graham. GO Cellular Compartment: ESCRT III complex SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0005515GO-mf Annotation by Michelle Graham. GO Molecular Function: protein binding SoyBaseN/AISS
KOG2910 KOG Uncharacterized conserved protein predicted to be involved in protein sorting JGI ISS
PTHR22761Panther SNF7 - RELATED JGI ISS
PF03357PFAM Snf7 JGI ISS
UniRef100_I1JXZ5UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JXZ5_SOYBN SoyBaseE_val: 3.00E-146ISS
UniRef100_Q9FY89UniRef Annotation by Michelle Graham. Most informative UniRef hit: Vacuolar protein sorting-associated protein 20 homolog 2 n=1 Tax=Arabidopsis thaliana RepID=VP202_ARATH SoyBaseE_val: 3.00E-112ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma04g38750 not represented in the dataset

Glyma04g38750 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

ParalogEvidenceComments
Glyma06g16240 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Corresponding NameAnnotation VersionEvidenceComments
Glyma.04g210200 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma04g38750.1   sequence type=CDS   gene model=Glyma04g38750   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTAATTTGTTCGTGAAGAAGCCCAAGGTAACAGACGTCGATAAAGCAATTCTCGCTCTCAAGACCCAGAGACGCAAACTCGCCCAATATCAACAGAAGCTAGATGCTGTTATTGAAGCAGAAAAGCAAGCTGCACGAGACTTGATTCGTGAAAAGAAGAAGGACAGGGCCTTGTTAGCACTAAAGAAAAAAAAGACACAAGAAGAATTGTTGAAGCAAGTTGATGCTTGGCTTATAAATGTTGAGCAACAATTAGCAGATATTGAACTGGCTAGCAAGCAGAAGGCTGTGTTTGAAAGTTTGAAAGCTGGTAATGATGCAATGAAAGCCATACAAAGTGAGATAAACATTGAAGATGTTCAGAAACTTATGGATGACACTGCTGAAGCTAAAGCTTATCAAGATGAAATTAATGAAATAATGGGGGAGAAGTTATCAGCAGAAGACGAGGAGGAGATTTTAGCGGAATTTGAGGACTTGGAAATCCAGCTTACAGTCCAAGATCTTCCCGAAGTTCCTCCCTCAGTTCATGAAGAAATTGAAGAAAAGTTGGACCTTCCTGATGTCCCAACCAAAGCACCAGTTACCAGTGATGCTGAAGTATCTACAAAAGGAAAAGTTATGGAGGAACCGTTGGCAGCTTGA

>Glyma04g38750.1   sequence type=predicted peptide   gene model=Glyma04g38750   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGNLFVKKPKVTDVDKAILALKTQRRKLAQYQQKLDAVIEAEKQAARDLIREKKKDRALLALKKKKTQEELLKQVDAWLINVEQQLADIELASKQKAVFESLKAGNDAMKAIQSEINIEDVQKLMDDTAEAKAYQDEINEIMGEKLSAEDEEEILAEFEDLEIQLTVQDLPEVPPSVHEEIEEKLDLPDVPTKAPVTSDAEVSTKGKVMEEPLAA*







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