Glyma04g38740 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma04g38740

Feature Type:	gene_model
Chromosome:	Gm04
Start:	45082003
stop:	45084293
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g38740

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G09250	AT	Annotation by Michelle Graham. TAIR10: ssDNA-binding transcriptional regulator \| chr5:2875421-2876368 REVERSE LENGTH=107	SoyBase	E_val: 6.00E-39	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0003713	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transcription coactivator activity	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
KOG2712	KOG	Transcriptional coactivator	JGI		ISS
PTHR13215	Panther	RNA POLYMERASE II TRANSCRIPTIONAL COACTIVATOR	JGI		ISS
PF02229	PFAM	Transcriptional Coactivator p15 (PC4)	JGI		ISS
UniRef100_C6TAV5	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6TAV5_SOYBN	SoyBase	E_val: 1.00E-69	ISS
UniRef100_O65154	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: RNA polymerase II transcriptional coactivator KIWI n=2 Tax=Arabidopsis thaliana RepID=KIWI_ARATH	SoyBase	E_val: 3.00E-36	ISS

Expression Patterns of Glyma04g38740

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g38740

Paralog	Evidence	Comments
Glyma06g16250	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g38740 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g210100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g38740

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma04g38740

Limit To All Plant Sequences

>Glyma04g38740.2   sequence type=transcript   gene model=Glyma04g38740   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AAGACACAATCCAAGTCCCTAATTTTGCATCTTGCAAAGCCCAAAAGAAAATGAAAAAAAAGAGAGGAGAAAGTTACTTAAATTAAAACCCTGAGAATGCGAAAATTTTGAGACGCAGCGAGTGGAGTGGAGTGAACTTTCGCATCAACCCTTGAGTGTCGTTTCGTTTGGGCGCCAAAAGCGTTTCTAGATTTCAATTTTTCGAAACTGAAAAGAAAAACTTACTCGAGAAAATGTCTGGAAAGGCGAAGAGGAGAGACGACGACGATGCTTCCGACGCCGACTCCGAAGGCCACGCGCCGCCCATGAAGTCCCTCAAGAAGGATTCCGACGACGATCCCGACTCTGTTACCATTTGCGAAATTTCGAAGAACAGGAGGGTTGCCGTGAGGAACTGGAAAGGCAGCATTATGGTTGACATTCGCGAGTTTTACGTCAAAGATGGCAAGCAATTGCCTGGCAGGAAAGGTATCTCGTTGACCATGGATCAGTGGAATGTGCTTCGTAATCATGTTGAAGAAATTGACAAGGCAGTTAATGAGAATTCTTAGGAAGTGGGCATCTAGTCAATTTAATAGTTTACTATGATAGCAGGTTATATATATAGTCTTTTTGGATGATTTGAAGTACAGTTAAGGGCTACAGTATTTTGTCTGATCAAACCCTTCGAGGTTGCTATTGTAGGATTTCGATTTCAGCCTCTGGTTACTAATGCATGTAAAGTGACCTCTATTATATATGCTAGTAGTTGGTTAACTATCTACTGCTTACTGCTACCACATGCTGTTATTTATCCTCTGAAACAGTAAAAACTGTGGACAAAGAAAGGGAAGGAGAAACTACAAATTTCAAGA

Coding sequences of Glyma04g38740

Limit To All Plant Sequences

>Glyma04g38740.1   sequence type=CDS   gene model=Glyma04g38740   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCTGGAAAGGCGAAGAGGAGAGACGACGACGATGCTTCCGACGCCGACTCCGAAGGCCACGCGCCGCCCATGAAGTCCCTCAAGAAGGATTCCGACGACGATCCCGACTCTGTTACCATTTGCGAAATTTCGAAGAACAGGAGGGTTGCCGTGAGGAACTGGAAAGGCAGCATTATGGTTGACATTCGCGAGTTTTACGTCAAAGATGGCAAGCAATTGCCTGGCAGGAAAGGTATCTCGTTGACCATGGATCAGTGGAATGTGCTTCGTAATCATGTTGAAGAAATTGACAAGGCAGTTAATGAGAATTCTTAG

>Glyma04g38740.2   sequence type=CDS   gene model=Glyma04g38740   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCTGGAAAGGCGAAGAGGAGAGACGACGACGATGCTTCCGACGCCGACTCCGAAGGCCACGCGCCGCCCATGAAGTCCCTCAAGAAGGATTCCGACGACGATCCCGACTCTGTTACCATTTGCGAAATTTCGAAGAACAGGAGGGTTGCCGTGAGGAACTGGAAAGGCAGCATTATGGTTGACATTCGCGAGTTTTACGTCAAAGATGGCAAGCAATTGCCTGGCAGGAAAGGTATCTCGTTGACCATGGATCAGTGGAATGTGCTTCGTAATCATGTTGAAGAAATTGACAAGGCAGTTAATGAGAATTCTTAG

Predicted protein sequences of Glyma04g38740

Limit To All Plant Sequences

>Glyma04g38740.1   sequence type=predicted peptide   gene model=Glyma04g38740   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSGKAKRRDDDDASDADSEGHAPPMKSLKKDSDDDPDSVTICEISKNRRVAVRNWKGSIMVDIREFYVKDGKQLPGRKGISLTMDQWNVLRNHVEEIDKAVNENS*

>Glyma04g38740.2   sequence type=predicted peptide   gene model=Glyma04g38740   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSGKAKRRDDDDASDADSEGHAPPMKSLKKDSDDDPDSVTICEISKNRRVAVRNWKGSIMVDIREFYVKDGKQLPGRKGISLTMDQWNVLRNHVEEIDKAVNENS*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain