SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G09230 | AT | Annotation by Michelle Graham. TAIR10: sirtuin 2 | chr5:2871559-2873613 FORWARD LENGTH=376 | SoyBase | E_val: 0 | ISS |
| GO:0006342 | GO-bp | Annotation by Michelle Graham. GO Biological Process: chromatin silencing | SoyBase | N/A | ISS |
| GO:0006355 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent | SoyBase | N/A | ISS |
| GO:0006476 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein deacetylation | SoyBase | N/A | ISS |
| GO:0031348 | GO-bp | Annotation by Michelle Graham. GO Biological Process: negative regulation of defense response | SoyBase | N/A | ISS |
| GO:0042742 | GO-bp | Annotation by Michelle Graham. GO Biological Process: defense response to bacterium | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005677 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chromatin silencing complex | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0003677 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: DNA binding | SoyBase | N/A | ISS |
| GO:0008270 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: zinc ion binding | SoyBase | N/A | ISS |
| GO:0070403 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: NAD+ binding | SoyBase | N/A | ISS |
| KOG2683 | KOG | Sirtuin 4 and related class II sirtuins (SIR2 family) | JGI | ISS | |
| PTHR11085 | Panther | CHROMATIN REGULATORY PROTEIN SIR2 | JGI | ISS | |
| PF02146 | PFAM | Sir2 family | JGI | ISS | |
| UniRef100_I1JXZ2 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: NAD-dependent protein deacetylase n=1 Tax=Glycine max RepID=I1JXZ2_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_I1JXZ2 | UniRef | Annotation by Michelle Graham. Best UniRef hit: NAD-dependent protein deacetylase n=1 Tax=Glycine max RepID=I1JXZ2_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma04g38730 not represented in the dataset |
Glyma04g38730 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma06g16260 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.04g210000 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma04g38730.1 sequence type=CDS gene model=Glyma04g38730 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCTATGTCTTTACCTCTTCGTTTCTATTCCTCCTCGTCTTTCTCTCTCACTTCTCTTGGGGTTGTGAGAAAAGTGCTCGGGACTCTTACAACAGATATTGTTCAACCAAGGAGTGGAAATTGGCACTTAGCAAAAAGAGGTGGAAGACTCATATCGTTTAAGGGTCGTGCGAGGCTGGTACATACAACGTGCCGAATCTCTGTCCCTGGGACCTTACCAAGAACTGATGAAAAGGCCTCATCTAACATCTCGAGGGATAAGAAGACAGTTCCAGAAGCAGATCCTCCGAGTATCAAAGACGTTCAGCTTTTGTATGAATTTTTGGACCGGAGTACCAAGCTCACGGTATTGACTGGAGCTGGAATCAGTACAGAGTGTGGCATCCCCGACTACAGAAGCCCCAATGGAGCTTATAGTTCTGGTTTCAAACCAATAACCCATCAGGAGTTTCTCCGTTCAAGTCGAGCTCGGAGGAGATATTGGGCAAGGAGCTATGCTGGATGGAGGCGATTTACAACAGCACAACCATCTGCTGCCCATACTGCATTGGCCACATTAGATAAAGCTGGCCGAATCAATTTTATGATTACCCAAAATGTTGATAGGCTGCATCATCGTGCTGGTAGCAACCCATTAGAAATACATGGGACTGTATACACTGTAATTTGTATAGATTGTGGATATTCCTTTTGCCGGAGCTTATTTCAGGACCAGTTGAAGACCCTTAATCCCAAGTGGGCAGAAGCAATCGATAACTTGGACCATGGAAACCCTGGATCAGATAAGAGTTTTGGCATGAAACAAAGACCTGATGGTGATATTGAGATTGATGAAAGATTTTGGGAGGAGGATTTTACCATCCCAACTTGTCATAAGTGCAATGGAGCTCTCAAACCTGATGTTGTCTTTTTTGGTGATAATGTTCCCAAGGACAGAGCTGATATGGCAATGGAAGCATCTAGAAGATGTGATGCTTTTCTTGTACTCGGGTCATCTCTGATGACCATGTCTGCTTTTCGACTTATCAGAGCAGCTCATGAGGCTGGTGCTGCTACTGCAATTGTGAACATAGGTGTGACGCGTGCTGATGATTTTGTGCCCCTGAAAATAAATGCACGATTGGGTGAGATCCTGCCAAGAGTACTTGATATTGGATCTATAAGCATACCCGCTGTATAA
>Glyma04g38730.1 sequence type=predicted peptide gene model=Glyma04g38730 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAMSLPLRFYSSSSFSLTSLGVVRKVLGTLTTDIVQPRSGNWHLAKRGGRLISFKGRARLVHTTCRISVPGTLPRTDEKASSNISRDKKTVPEADPPSIKDVQLLYEFLDRSTKLTVLTGAGISTECGIPDYRSPNGAYSSGFKPITHQEFLRSSRARRRYWARSYAGWRRFTTAQPSAAHTALATLDKAGRINFMITQNVDRLHHRAGSNPLEIHGTVYTVICIDCGYSFCRSLFQDQLKTLNPKWAEAIDNLDHGNPGSDKSFGMKQRPDGDIEIDERFWEEDFTIPTCHKCNGALKPDVVFFGDNVPKDRADMAMEASRRCDAFLVLGSSLMTMSAFRLIRAAHEAGAATAIVNIGVTRADDFVPLKINARLGEILPRVLDIGSISIPAV*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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