Report for Sequence Feature Glyma04g38710
Feature Type: gene_model
Chromosome: Gm04
Start: 45063101
stop: 45066823
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma04g38710
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT2G01170 AT
Annotation by Michelle Graham. TAIR10: bidirectional amino acid transporter 1 | chr2:102364-104462 REVERSE LENGTH=516
SoyBase E_val: 5.00E-131 ISS
GO:0003333 GO-bp
Annotation by Michelle Graham. GO Biological Process: amino acid transmembrane transport
SoyBase N/A ISS
GO:0015812 GO-bp
Annotation by Michelle Graham. GO Biological Process: gamma-aminobutyric acid transport
SoyBase N/A ISS
GO:0005739 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion
SoyBase N/A ISS
GO:0016020 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: membrane
SoyBase N/A ISS
GO:0016021 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane
SoyBase N/A ISS
GO:0005313 GO-mf
Annotation by Michelle Graham. GO Molecular Function: L-glutamate transmembrane transporter activity
SoyBase N/A ISS
GO:0015171 GO-mf
Annotation by Michelle Graham. GO Molecular Function: amino acid transmembrane transporter activity
SoyBase N/A ISS
GO:0015180 GO-mf
Annotation by Michelle Graham. GO Molecular Function: L-alanine transmembrane transporter activity
SoyBase N/A ISS
GO:0015181 GO-mf
Annotation by Michelle Graham. GO Molecular Function: arginine transmembrane transporter activity
SoyBase N/A ISS
GO:0015185 GO-mf
Annotation by Michelle Graham. GO Molecular Function: gamma-aminobutyric acid transmembrane transporter activity
SoyBase N/A ISS
GO:0015189 GO-mf
Annotation by Michelle Graham. GO Molecular Function: L-lysine transmembrane transporter activity
SoyBase N/A ISS
KOG1289
KOG
Amino acid transporters
JGI ISS
PTHR11785 Panther
AMINO ACID TRANSPORTER
JGI ISS
PTHR11785:SF13 Panther
AMINO ACID TRANSPORTER-RELATED
JGI ISS
PF00324 PFAM
Amino acid permease
JGI ISS
UniRef100_G7JC64 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Amino-acid permease, putative n=1 Tax=Medicago truncatula RepID=G7JC64_MEDTR
SoyBase E_val: 0 ISS
UniRef100_I1JXZ0 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JXZ0_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma04g38710
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma04g38710
Paralog Evidence Comments
Glyma06g16280 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma04g38710 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.04g209800 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma04g38710
Coding sequences of Glyma04g38710
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma04g38710.1 sequence type=CDS gene model=Glyma04g38710 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGATTCAGCAGAGAAGAGGCTCAATGAGCTTGGTTACAAGCAAGAACTGAGAAGAGAAATGACTTTGTTTAAGACTCTGGCAATATCATTTTCCACAATGACCCTTTTCACTGGAATTACACCTCTCTATGGTTCTAGTCTTCAATATGCAGGCCCTGCAACTCTTGTTTGGGGGTGGATAGTGGTTTCTTTCTTCACTTGGTTTGTTGGGATTGCAATGGCTGAGATATGCTCATCCTTCCCGACGACTGGTTCTCTGTACTTTTGGGCTGCCCATTTAGCTGGTCCAAAATGGGGACCATTTTCTTCATGGTGCTGTGCTTGGCTTGAGACCATAGGGCTTATAGCTGGGATAGGGACTCAGGCATATGCAGGTTCACAAACGTTGCAGAGTATAATCCTACTCTCAACTGGCACAAATAAAGGTGGAGGATACTTCGCTCCAAAATGGCTATTCTTATGTATGTATATTGGCCTCACTGTTATATGGGCAGCACTAAACACATTTGCATTGGAAGTGATTGCTTTGATCGATATAGTTTCAATATGGTGGCAGGTTATTGGTGGAATTGTGATAGTCATAATGTTACCTCTGGTAGCACTGACTACAAAATCTGCTTCATTTGTATTCACACACTTAGAATTGGCCCCTGAATCAACAGGAGTATCAAGCAAACCATATGCAGTCATTCTATCATTTCTTGTCAGCCAGTATTCTCTCTATGGCTATGATGCTGCAGCACATTTAACTGAAGAAACCAAAGGTGCAGACAAGAACGGGCCTATTGCAATACTAGGTAGTATTGGGATCATTACAGTATTTGGATGGGCTTACATCTTGGCACTTACATTCAGCATTCAGGATTTTGGTTACCTTTATGATCCAAACAATGAGACTGCTGGAGCATTTGTTCCAGCACAAATACTCTATGATGCATTCCATGGGAGATATCACAATTCTGCTGGAGCAATCATTCTACTATTTGTCATTTGGGGTTCATTCTTTTTTGGTGGGCTTTCAATTACTACAAGTGCTGCCAGAGTGGTTTATGCTTTGTCTAGAGACAAGGGAGTTCCTTTTTCACACTTATGGCGGCAACTGCACCCAAAGTACAAGGTTCCTTCAAATGCAGTGTGGCTCTGTGCTGCAATCTGCATTCTTCTTGGTCTCCCAATTTTGAAGGTCAATGTAGTCTTCACTGCAATAACTTCAATATGTACTATTGGATGGGTTGGTGGTTATGCAGTTCCTATCTTTGCAAGGCTTGTGATGTCTGAGAAGAACTTCAAGCCCGGGCCATTTTATTTAGGCAAAGCAAGAAGACCAGTCTGTCTGGTGGCATTCCTATGGATTTGTTACACATGTTCTGTATTCCTTTTGCCAACTCTGTACCCAATTACTTGGGATACTTTCAATTATGCACCAGTTGCTTTGGGGGTAGGTTTGGGTCTAATAATGCTTTGGTGGCTTTTAGATGCTAGAAAATGGTTCACAGGGCCAGTTAGGAATATTGATATTCAAAATGGCAAAGTCTAA
Predicted protein sequences of Glyma04g38710
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma04g38710.1 sequence type=predicted peptide gene model=Glyma04g38710 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MDSAEKRLNELGYKQELRREMTLFKTLAISFSTMTLFTGITPLYGSSLQYAGPATLVWGWIVVSFFTWFVGIAMAEICSSFPTTGSLYFWAAHLAGPKWGPFSSWCCAWLETIGLIAGIGTQAYAGSQTLQSIILLSTGTNKGGGYFAPKWLFLCMYIGLTVIWAALNTFALEVIALIDIVSIWWQVIGGIVIVIMLPLVALTTKSASFVFTHLELAPESTGVSSKPYAVILSFLVSQYSLYGYDAAAHLTEETKGADKNGPIAILGSIGIITVFGWAYILALTFSIQDFGYLYDPNNETAGAFVPAQILYDAFHGRYHNSAGAIILLFVIWGSFFFGGLSITTSAARVVYALSRDKGVPFSHLWRQLHPKYKVPSNAVWLCAAICILLGLPILKVNVVFTAITSICTIGWVGGYAVPIFARLVMSEKNFKPGPFYLGKARRPVCLVAFLWICYTCSVFLLPTLYPITWDTFNYAPVALGVGLGLIMLWWLLDARKWFTGPVRNIDIQNGKV*