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Report for Sequence Feature Glyma04g38661

Feature Type:gene_model
Chromosome:Gm04
Start:45018957
stop:45028088
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma04g38661
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G12770AT Annotation by Michelle Graham. TAIR10: Chaperone DnaJ-domain superfamily protein | chr4:7506736-7511408 REVERSE LENGTH=891 SoyBaseE_val: 5.00E-176ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0005829GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytosol SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0031072GO-mf Annotation by Michelle Graham. GO Molecular Function: heat shock protein binding SoyBaseN/AISS
KOG0431 KOG Auxilin-like protein and related proteins containing DnaJ domain JGI ISS
PTHR23172Panther AUXILIN/CYCLIN G-ASSOCIATED KINASE-RELATED JGI ISS
PTHR23172:SF31Panther SUBFAMILY NOT NAMED JGI ISS
UniRef100_G7LEY3UniRef Annotation by Michelle Graham. Most informative UniRef hit: Auxilin-like protein n=1 Tax=Medicago truncatula RepID=G7LEY3_MEDTR SoyBaseE_val: 0ISS
UniRef100_UPI0002339EF1UniRef Annotation by Michelle Graham. Best UniRef hit: UPI0002339EF1 related cluster n=1 Tax=unknown RepID=UPI0002339EF1 SoyBaseE_val: 0ISS

Expression Patterns of Glyma04g38661
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma04g38661 not represented in the dataset
Glyma04g38661 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g38661
ParalogEvidenceComments
Glyma06g16330 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g38661 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.04g209400 Wm82.a2.v1IGC As supplied by JGI

References for Glyma04g38661
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma04g38661
>Glyma04g38661.1   sequence type=CDS   gene model=Glyma04g38661   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAACGATTTCGATGGTCTCTTAGCCACCGATTTCGGGTTCAAACCCCAAGGCAAATCAGCGCCAATGGCTGCTTCCAAAGTCTCCTCCAACAACAAAACTTCTTCTCTCAACTTCGATTTAGGTTCCCGATCCACTCGCACCTCCAATTCTTCCGTCAACGCCGCCGCCGCCGCCGCCTCCTTTGACGATCTCTTCGGCGACTCCTCCGTCTTTCGGGCCTCCGCCGATTTCCGTTCCAAGTCCGTCAACGTGCCGGTGCACGACGGGCCGGTCTTTGACAAACCAGTCTACGACGATGACGATGACATTTTTGACGGCGTTCCCGGCCTCAAGAGCTCCTCCAAGGTCTCCTATGACGACGTTTTCGCTCCGGGAGGGAGCGCCGCCGCCGCCGCCGCGTTCGACGATCTTCTCGGCAGGTTAGGCAAATCGGAGAAGGTCGAGAAAGGTGCCGCGGATTTTGATGACTTGATCCCTGGATTCCGGAGCAGTAAGGCCTCCACTGATGGGACCATTCCTGATATTAATTTGTCACCAGAACCTACTATCGATGCTTCTAAGACAGCCTCTAGTACAACAGACGACCCTTTCAAAGTCTTTGAATCAACTTCAGCCCCAGTGGATTCATCCTCAGACTACTTTACAGACCCACTGGAAGAAATTAGTAAATTTACTAGTTCTAGAAGCACAAAAAATGATAGGTCATCAAATTCTAATGGTGAAGTATATGATGATATTGATCCCTTTGGTGGACTTGGAAATTCTGTACCTGCATTCTCAGCAGAGAGAAATAGCATGAAGGGTAGCAGCTCTCCAACGCCAAGGTCAAATACAAGTTCAAGCTGGACCAGAGATAAAGAATCAAATGACATATCGTCTGTGAGGAGTCCTGACAGAAAGACACCAAACAAGATTCTTGTTGATCATGATCAGGAATTTCATCAGGCTGCATTTGACATGCCTACATATTCATCTGATTCTTACAAACCAGTTGGCCAAAGGTCTACTTTCCCTTCATATGATAACAACGGTTTTAAACAGGCTAATACTCTGGAAGATATGTCTCCAAAATATGAAGAAAAGTTGGAATCAAATGATGATATATGGTTGATGGTATCAGAGATTCCTCTTTTCACTCAGCCAACTGCTGCTCCACCACCTTCAAGACCACCTCCTCCTCGACCAGTACATATCCTCAAGTCAGGAGCAGGTTCATCAGCTTCTGCCAATGTCAGAAAGAAGGATAATGATTTTTCTTATTTTCCAAGTTCCACTCAATTTTCTCAGGGTCCTAAATCTGCTCCTGCTGCAGCCAAGTTTTCTTCTGCATCTCAGTTTGATGAACTTGAAGATTTTGCCATGGGAAAGAGTCGTGATAATGACGATGAAGGTGTAAATGGTCTTGCCGACAAAGAATTAGAGATGAACTCAGCTGCTGCAGCTATGAAAGAGGCTATGGATAGAGCTGAAGCTAAATTTAGGCATGCAAAGGGGGTTAGGGAGAGAGAGAATACGAAAGTGGCTAAAAGCAAGGAACCTGTCCAATTGGATAAAGATGGTAAAGTGGTGTCAGAGGACAGAGGAAAACAGGAAAGGTTAGACCATGAATGGCAGCAAAAGGAGAGAGAGGAAAAGGAGCAAAGAAGATGTGAGAAGGAAAGGGAGGAGAAAGAAAGAGAACAACAGAGACTTGAGAGAGAAAGAGAAAGGGCAAGACAGGCTGTGGAAAGAGCTACTAGAGAAGCTCGTGAGAGAGCAGCTGCTGAAGCTCGCCAAAGAGCTGAGAGGGCTGCTGTTGAGAAAGCTAATGCAGAAGCTAGAAAGCGTGCTGAAAGGACCGCAGTTCAGAGGGCACAAGCTGAAGCCCGTGAAAGGGCTGCTGCAGAGGCAAAGGAAAGAGAAGTGCGGGAAAGAGCTGCAGCTGCAAGAGCTGAACCTGAAGCAAGAGTTAAAGCTGAACGTGCTGCTGTAGAAAGGGCTGCTGCAGAGGCCCGAGAAAGAGCTGTAGCACAGGCCCGAGAAAGAGCTGCAGCTGCTGCAAGGATGAGCCAACAACAGAATGACAATGATCTTGAATCGTTCTTCAGCACAGATGCACGAGCTAACAGTGCTCCAAGGCCTCCTAGGCCCAGCTCTTCAGACTCTGTATTTGATGCCCAATTTCAGTCAGATGTAACCCGGAAATCTACAGGCGTGTCTTCAAGCATGAAGAAAGCATCATCATCCACTAATATTGTTGATGATCTTTCCTCAATTTTTGGAGCCGCTCCATCATCATCTGGAGAGTTTCAGGAGATTGAAGGGGAAACTGAAGAAAGACGAAGAGCCAGGTTGGAACGCCACCAGAGGACTCAGGAGCGTGCGGCTAAAGCACTGGCTGAGAAGAATCAACGGGACCTACAAACTCAAAGAGACCAAGCTGAGAGACATAGGGTTGCTGAAACATTAGATTTTGAAATTAAGCGCTGGGCTGCTGGAAAAGTGGGGAACTTGCGTGCTTTGCTTTCCACTTTACAATATGTTCTGTGGCCTGAATGTGGTTGGCAGCCAGTTTCTTTGACTGATTTGATTACAGCTGCTGCTGTTAGAAAGGTTTATAGGAAAGCTACATTGTGCACTCATCCTGATAAAGTACAACAGAAGGGTGCCACTATTCAACAGAAATATATTGCTGAGAAGGTTTTTGATCTACTCAAGGAAGCATGGAATAAGTTCAATTCAGAGGAGCTTTTCTAA
Predicted protein sequences of Glyma04g38661
>Glyma04g38661.1   sequence type=predicted peptide   gene model=Glyma04g38661   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNDFDGLLATDFGFKPQGKSAPMAASKVSSNNKTSSLNFDLGSRSTRTSNSSVNAAAAAASFDDLFGDSSVFRASADFRSKSVNVPVHDGPVFDKPVYDDDDDIFDGVPGLKSSSKVSYDDVFAPGGSAAAAAAFDDLLGRLGKSEKVEKGAADFDDLIPGFRSSKASTDGTIPDINLSPEPTIDASKTASSTTDDPFKVFESTSAPVDSSSDYFTDPLEEISKFTSSRSTKNDRSSNSNGEVYDDIDPFGGLGNSVPAFSAERNSMKGSSSPTPRSNTSSSWTRDKESNDISSVRSPDRKTPNKILVDHDQEFHQAAFDMPTYSSDSYKPVGQRSTFPSYDNNGFKQANTLEDMSPKYEEKLESNDDIWLMVSEIPLFTQPTAAPPPSRPPPPRPVHILKSGAGSSASANVRKKDNDFSYFPSSTQFSQGPKSAPAAAKFSSASQFDELEDFAMGKSRDNDDEGVNGLADKELEMNSAAAAMKEAMDRAEAKFRHAKGVRERENTKVAKSKEPVQLDKDGKVVSEDRGKQERLDHEWQQKEREEKEQRRCEKEREEKEREQQRLERERERARQAVERATREARERAAAEARQRAERAAVEKANAEARKRAERTAVQRAQAEARERAAAEAKEREVRERAAAARAEPEARVKAERAAVERAAAEARERAVAQARERAAAAARMSQQQNDNDLESFFSTDARANSAPRPPRPSSSDSVFDAQFQSDVTRKSTGVSSSMKKASSSTNIVDDLSSIFGAAPSSSGEFQEIEGETEERRRARLERHQRTQERAAKALAEKNQRDLQTQRDQAERHRVAETLDFEIKRWAAGKVGNLRALLSTLQYVLWPECGWQPVSLTDLITAAAVRKVYRKATLCTHPDKVQQKGATIQQKYIAEKVFDLLKEAWNKFNSEELF*






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