Glyma04g38650 - SoyBase

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Report for Sequence Feature Glyma04g38650

Feature Type:	gene_model
Chromosome:	Gm04
Start:	45011614
stop:	45018499
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g38650

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G09220	AT	Annotation by Michelle Graham. TAIR10: amino acid permease 2 \| chr5:2866867-2868863 FORWARD LENGTH=493	SoyBase	E_val: 0	ISS
GO:0006612	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein targeting to membrane	SoyBase	N/A	ISS
GO:0006833	GO-bp	Annotation by Michelle Graham. GO Biological Process: water transport	SoyBase	N/A	ISS
GO:0006865	GO-bp	Annotation by Michelle Graham. GO Biological Process: amino acid transport	SoyBase	N/A	ISS
GO:0009651	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to salt stress	SoyBase	N/A	ISS
GO:0009750	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to fructose stimulus	SoyBase	N/A	ISS
GO:0009963	GO-bp	Annotation by Michelle Graham. GO Biological Process: positive regulation of flavonoid biosynthetic process	SoyBase	N/A	ISS
GO:0010363	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of plant-type hypersensitive response	SoyBase	N/A	ISS
GO:0015800	GO-bp	Annotation by Michelle Graham. GO Biological Process: acidic amino acid transport	SoyBase	N/A	ISS
GO:0015804	GO-bp	Annotation by Michelle Graham. GO Biological Process: neutral amino acid transport	SoyBase	N/A	ISS
GO:0030003	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular cation homeostasis	SoyBase	N/A	ISS
GO:0070838	GO-bp	Annotation by Michelle Graham. GO Biological Process: divalent metal ion transport	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0005887	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: integral to plasma membrane	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0015171	GO-mf	Annotation by Michelle Graham. GO Molecular Function: amino acid transmembrane transporter activity	SoyBase	N/A	ISS
KOG1303	KOG	Amino acid transporters	JGI		ISS
PTHR22950	Panther	AMINO ACID TRANSPORTER	JGI		ISS
PF01490	PFAM	Transmembrane amino acid transporter protein	JGI		ISS
UniRef100_A7XVK0	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Amino acid transporter n=1 Tax=Phaseolus vulgaris RepID=A7XVK0_PHAVU	SoyBase	E_val: 0	ISS
UniRef100_I1JXY4	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JXY4_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma04g38650

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma04g38650 not represented in the dataset	Glyma04g38650 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g38650

Paralog	Evidence	Comments
Glyma06g16340	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g38650 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g209200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g38650

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma04g38650

Limit To All Plant Sequences

>Glyma04g38650.2   sequence type=transcript   gene model=Glyma04g38650   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CTAGCTGCTCAGTATGGTTTGGTTGACCAAACTCATTCTCACTCCCCACAGCAGCAGCAACAACAAGAACGAACCTTCTCTTTGGGTTCCACATTAATCAAAACCAACCTTGGCCACCATCAAGATTTTGGCATGGAGGCTTACTCCATAGATGGTGTTTCTTCACAAAGTGAGTCCAAATTCTACGATGATGATGGTCATGTTAAACGAACAGGGAACGTTTGGACTACAAGCTCGCACATAATAACAGCAGTGGTGGGTTCTGGGGTGCTGTCTTTGGCATGGGCCATGGCTCAAATGGGTTGGGTTGCTGGGCCTGTAGTTATGATCTTCTTCAGTGCTGTTACGTTGTATACGACGTCGCTTCTGGCTGATTGTTATCGGTGCGGTGACCCCGTTACGGGGAAGAGAAACTATACTTTCATGGATGCAGTTCAATCCATTCTTGGCGGGTATTATGATACGTTTTGTGGGGTAGTTCAGTACTCAAATCTTTACGGAACCGCTGTAGGATACACAATTGCAGCTTCTATTAGCATGATGGCGATAAAAAGGTCCAACTGTTTCCATTCTTCAGGCGTAAAAAATCCATGTCACGTTTCAAGCAACCCATACATGATCGGTTTTGGCATAATCCAAATTTTATTTTCTCAAATTCCAGATTTTCATAAAACATGGTGGCTCTCCATAGTTGCAGCAATCATGTCATTTGCCTATTCCACAATTGGCCTCGCTCTTGGAATTGCTAAAGTTGCAGAAACGGGTACTTTCAAGGGTAGTCTCACAGGAGTAAGGATTGGAACTGTGACTGAGGCCACAAAAGTATGGGGGGTTTTCCAAGGTCTTGGTGACATAGCCTTTGCCTACTCATATTCTCAAATCCTCATTGAAATTCAGGACACCATAAAATCACCACCATCTGAAGCAAAGACAATGAAGAAGTCTGCTAAGATAAGTATTGGAGTAACCACAACATTTTATATGCTTTGTGGCTTCATGGGCTATGCTGCTTTTGGAGATTCAGCTCCTGGGAACCTGCTCACAGGATTTGGTTTTTTTAACCCATATTGGCTCATAGATATTGCCAATGCTGCTATCGTAATTCACCTTGTGGGAGCATACCAAGTTTATGCCCAGCCACTCTTTGCCTTTGTGGAGAAATGGGCTTCAAAAAGATGGCCCGAAGTTGACACGGAATACAAAGTTCCAATTCCTGGTTTTTCACCTTACAATCTAAGCCCATTTAGATTAGTTTGGAGAACGGTGTTTGTTATCATAACCACTATTGTAGCAATGTTAATTCCATTCTTCAATGACGTTTTGGGACTTCTTGGAGCACTGGGGTTTTGGCCTTTAAGTGTTTTTCTCCCAGTGCAGATGAGTATCAAACAAAAGAGGACCCCTAGGTGGAGTAGTAGATGGATTGGTATGCAAATCTTAAGTGTTGTTTGTCTCATAGTATCAGTTGCAGCTGCTGTTGGCTCAGTTGCCAGTATCGTGCTTGACCTACAGAAATACAAACCGTTTCATGTAGACTATTAAACCCCATCCACGCCCTCCCTAGCAAAGGGTAAAAACTGATGTGGGCAATGATGGTTGTTTGTATATCTTTTGTTTAGATCTGAGATTGGAGCCGAAGGTATTCCAAAAAACAGAAACCATGGGACTAATCTCCTGAAAAAGTAAAGTATTAATTAAGGGACAATATCTTTACCTTACAGGTGCTGCTCTATGCACATAATCATTGATCAAACCCCTATCATCACATGGTTAAAGAACCCAAACTATTTGTCACTTGTGACACACCTTATGATTGTTTGTATATCTTTTATTTCATGAGCAATGTTATTTCAGTGCCACCCTTATTACAATCTTCAAGCATTGAATTGAAATTATTATCCTCCCAGCTCTCTCTTCCTTCCATTTCAGTTTTAAAAAAAGTTTATAAAGCAAAAAGTTCTAGTCATTTTCGATTTTCTT

Coding sequences of Glyma04g38650

Limit To All Plant Sequences

>Glyma04g38650.1   sequence type=CDS   gene model=Glyma04g38650   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTTGAAAAATCTTCCAGAACCAACCTTGGCCACCATCAAGATTTTGGCATGGAGGCTTACTCCATAGATGGTGTTTCTTCACAAAGTGAGTCCAAATTCTACGATGATGATGGTCATGTTAAACGAACAGGGAACGTTTGGACTACAAGCTCGCACATAATAACAGCAGTGGTGGGTTCTGGGGTGCTGTCTTTGGCATGGGCCATGGCTCAAATGGGTTGGGTTGCTGGGCCTGTAGTTATGATCTTCTTCAGTGCTGTTACGTTGTATACGACGTCGCTTCTGGCTGATTGTTATCGGTGCGGTGACCCCGTTACGGGGAAGAGAAACTATACTTTCATGGATGCAGTTCAATCCATTCTTGGCGGGTATTATGATACGTTTTGTGGGGTAGTTCAGTACTCAAATCTTTACGGAACCGCTGTAGGATACACAATTGCAGCTTCTATTAGCATGATGGCGATAAAAAGGTCCAACTGTTTCCATTCTTCAGGCGTAAAAAATCCATGTCACGTTTCAAGCAACCCATACATGATCGGTTTTGGCATAATCCAAATTTTATTTTCTCAAATTCCAGATTTTCATAAAACATGGTGGCTCTCCATAGTTGCAGCAATCATGTCATTTGCCTATTCCACAATTGGCCTCGCTCTTGGAATTGCTAAAGTTGCAGAAACGGGTACTTTCAAGGGTAGTCTCACAGGAGTAAGGATTGGAACTGTGACTGAGGCCACAAAAGTATGGGGGGTTTTCCAAGGTCTTGGTGACATAGCCTTTGCCTACTCATATTCTCAAATCCTCATTGAAATTCAGGACACCATAAAATCACCACCATCTGAAGCAAAGACAATGAAGAAGTCTGCTAAGATAAGTATTGGAGTAACCACAACATTTTATATGCTTTGTGGCTTCATGGGCTATGCTGCTTTTGGAGATTCAGCTCCTGGGAACCTGCTCACAGGATTTGGTTTTTTTAACCCATATTGGCTCATAGATATTGCCAATGCTGCTATCGTAATTCACCTTGTGGGAGCATACCAAGTTTATGCCCAGCCACTCTTTGCCTTTGTGGAGAAATGGGCTTCAAAAAGATGGCCCGAAGTTGACACGGAATACAAAGTTCCAATTCCTGGTTTTTCACCTTACAATCTAAGCCCATTTAGATTAGTTTGGAGAACGGTGTTTGTTATCATAACCACTATTGTAGCAATGTTAATTCCATTCTTCAATGACGTTTTGGGACTTCTTGGAGCACTGGGGTTTTGGCCTTTAAGTGTTTTTCTCCCAGTGCAGATGAGTATCAAACAAAAGAGGACCCCTAGGTGGAGTAGTAGATGGATTGGTATGCAAATCTTAAGTGTTGTTTGTCTCATAGTATCAGTTGCAGCTGCTGTTGGCTCAGTTGCCAGTATCGTGCTTGACCTACAGAAATACAAACCGTTTCATGTAGACTATTAA

>Glyma04g38650.2   sequence type=CDS   gene model=Glyma04g38650   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGGCTTACTCCATAGATGGTGTTTCTTCACAAAGTGAGTCCAAATTCTACGATGATGATGGTCATGTTAAACGAACAGGGAACGTTTGGACTACAAGCTCGCACATAATAACAGCAGTGGTGGGTTCTGGGGTGCTGTCTTTGGCATGGGCCATGGCTCAAATGGGTTGGGTTGCTGGGCCTGTAGTTATGATCTTCTTCAGTGCTGTTACGTTGTATACGACGTCGCTTCTGGCTGATTGTTATCGGTGCGGTGACCCCGTTACGGGGAAGAGAAACTATACTTTCATGGATGCAGTTCAATCCATTCTTGGCGGGTATTATGATACGTTTTGTGGGGTAGTTCAGTACTCAAATCTTTACGGAACCGCTGTAGGATACACAATTGCAGCTTCTATTAGCATGATGGCGATAAAAAGGTCCAACTGTTTCCATTCTTCAGGCGTAAAAAATCCATGTCACGTTTCAAGCAACCCATACATGATCGGTTTTGGCATAATCCAAATTTTATTTTCTCAAATTCCAGATTTTCATAAAACATGGTGGCTCTCCATAGTTGCAGCAATCATGTCATTTGCCTATTCCACAATTGGCCTCGCTCTTGGAATTGCTAAAGTTGCAGAAACGGGTACTTTCAAGGGTAGTCTCACAGGAGTAAGGATTGGAACTGTGACTGAGGCCACAAAAGTATGGGGGGTTTTCCAAGGTCTTGGTGACATAGCCTTTGCCTACTCATATTCTCAAATCCTCATTGAAATTCAGGACACCATAAAATCACCACCATCTGAAGCAAAGACAATGAAGAAGTCTGCTAAGATAAGTATTGGAGTAACCACAACATTTTATATGCTTTGTGGCTTCATGGGCTATGCTGCTTTTGGAGATTCAGCTCCTGGGAACCTGCTCACAGGATTTGGTTTTTTTAACCCATATTGGCTCATAGATATTGCCAATGCTGCTATCGTAATTCACCTTGTGGGAGCATACCAAGTTTATGCCCAGCCACTCTTTGCCTTTGTGGAGAAATGGGCTTCAAAAAGATGGCCCGAAGTTGACACGGAATACAAAGTTCCAATTCCTGGTTTTTCACCTTACAATCTAAGCCCATTTAGATTAGTTTGGAGAACGGTGTTTGTTATCATAACCACTATTGTAGCAATGTTAATTCCATTCTTCAATGACGTTTTGGGACTTCTTGGAGCACTGGGGTTTTGGCCTTTAAGTGTTTTTCTCCCAGTGCAGATGAGTATCAAACAAAAGAGGACCCCTAGGTGGAGTAGTAGATGGATTGGTATGCAAATCTTAAGTGTTGTTTGTCTCATAGTATCAGTTGCAGCTGCTGTTGGCTCAGTTGCCAGTATCGTGCTTGACCTACAGAAATACAAACCGTTTCATGTAGACTATTAA

Predicted protein sequences of Glyma04g38650

Limit To All Plant Sequences

>Glyma04g38650.1   sequence type=predicted peptide   gene model=Glyma04g38650   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVEKSSRTNLGHHQDFGMEAYSIDGVSSQSESKFYDDDGHVKRTGNVWTTSSHIITAVVGSGVLSLAWAMAQMGWVAGPVVMIFFSAVTLYTTSLLADCYRCGDPVTGKRNYTFMDAVQSILGGYYDTFCGVVQYSNLYGTAVGYTIAASISMMAIKRSNCFHSSGVKNPCHVSSNPYMIGFGIIQILFSQIPDFHKTWWLSIVAAIMSFAYSTIGLALGIAKVAETGTFKGSLTGVRIGTVTEATKVWGVFQGLGDIAFAYSYSQILIEIQDTIKSPPSEAKTMKKSAKISIGVTTTFYMLCGFMGYAAFGDSAPGNLLTGFGFFNPYWLIDIANAAIVIHLVGAYQVYAQPLFAFVEKWASKRWPEVDTEYKVPIPGFSPYNLSPFRLVWRTVFVIITTIVAMLIPFFNDVLGLLGALGFWPLSVFLPVQMSIKQKRTPRWSSRWIGMQILSVVCLIVSVAAAVGSVASIVLDLQKYKPFHVDY*

>Glyma04g38650.2   sequence type=predicted peptide   gene model=Glyma04g38650   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEAYSIDGVSSQSESKFYDDDGHVKRTGNVWTTSSHIITAVVGSGVLSLAWAMAQMGWVAGPVVMIFFSAVTLYTTSLLADCYRCGDPVTGKRNYTFMDAVQSILGGYYDTFCGVVQYSNLYGTAVGYTIAASISMMAIKRSNCFHSSGVKNPCHVSSNPYMIGFGIIQILFSQIPDFHKTWWLSIVAAIMSFAYSTIGLALGIAKVAETGTFKGSLTGVRIGTVTEATKVWGVFQGLGDIAFAYSYSQILIEIQDTIKSPPSEAKTMKKSAKISIGVTTTFYMLCGFMGYAAFGDSAPGNLLTGFGFFNPYWLIDIANAAIVIHLVGAYQVYAQPLFAFVEKWASKRWPEVDTEYKVPIPGFSPYNLSPFRLVWRTVFVIITTIVAMLIPFFNDVLGLLGALGFWPLSVFLPVQMSIKQKRTPRWSSRWIGMQILSVVCLIVSVAAAVGSVASIVLDLQKYKPFHVDY*

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