SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G63840 | AT | Annotation by Michelle Graham. TAIR10: Glycosyl hydrolases family 31 protein | chr5:25545056-25548922 FORWARD LENGTH=921 | SoyBase | E_val: 0 | ISS |
| GO:0005975 | GO-bp | Annotation by Michelle Graham. GO Biological Process: carbohydrate metabolic process | SoyBase | N/A | ISS |
| GO:0009826 | GO-bp | Annotation by Michelle Graham. GO Biological Process: unidimensional cell growth | SoyBase | N/A | ISS |
| GO:0030244 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cellulose biosynthetic process | SoyBase | N/A | ISS |
| GO:0042742 | GO-bp | Annotation by Michelle Graham. GO Biological Process: defense response to bacterium | SoyBase | N/A | ISS |
| GO:0046686 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to cadmium ion | SoyBase | N/A | ISS |
| GO:0048193 | GO-bp | Annotation by Michelle Graham. GO Biological Process: Golgi vesicle transport | SoyBase | N/A | ISS |
| GO:0005576 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: extracellular region | SoyBase | N/A | ISS |
| GO:0005783 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0004553 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: hydrolase activity, hydrolyzing O-glycosyl compounds | SoyBase | N/A | ISS |
| GO:0015926 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: glucosidase activity | SoyBase | N/A | ISS |
| KOG1066 | KOG | Glucosidase II catalytic (alpha) subunit and related enzymes, glycosyl hydrolase family 31 | JGI | ISS | |
| PTHR22762 | Panther | ALPHA-GLUCOSIDASE | JGI | ISS | |
| PTHR22762:SF7 | Panther | NEUTRAL ALPHA-GLUCOSIDASE AB PRECURSOR (GLUCOSIDASE II ALPHA SUBUNIT) (ALPHA GLUCOSIDASE 2) | JGI | ISS | |
| PF01055 | PFAM | Glycosyl hydrolases family 31 | JGI | ISS | |
| UniRef100_G7JC76 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Neutral alpha-glucosidase AB n=1 Tax=Medicago truncatula RepID=G7JC76_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1JXY2 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JXY2_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma04g38630 not represented in the dataset |
Glyma04g38630 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma06g16371 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.04g209000 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma04g38630.1 sequence type=CDS gene model=Glyma04g38630 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAGGAACGAAACGCTGCGTTTGATCCTTCTCCTCCTCCTCTGTTCCCACCTTCACTCCGTCCTCTCATGGAAGAAAGAGGAGTTCCGAACCTGCCACCAAACACCATTCTGCAAGCGCGCCCGATCCCGCGCCCCCGGCTCCTCCTCCCTCATCGCCACCGACGTTACCATCTCCCACGGCGACCTCACCGCCAAACTCACCCCAAAACATGATTCTCAATCCGAAACCAAACCCTTACTCCTCACCCTCTCCGTCTACCAACGCGGCATCCTCCGCCTCAAGATCGATGAGGACCCTTCCCTCTCCCCTCCCAAGAAACGCTTCGAGGTCCCCGACGTCATCGTTTCCGAATTCCCCTCCACCAAGCTCTGGCTCCCCAAAATCTCCTCCGTAGAAAACGGCCTCTCCTCCTCCGTTTACCTCTCCGACGGTCATTCCGCCGTCCTCCGCCACGACCCCTTCGAACTCTTCATCCGCGACGACTCGTCCGGCGACCGCGTCATCTCCCTCAACTCCCATGACCTCTTCGACTTCGAGCAGCTCAAACACAAATCCGAAGACGATAACTGGGAAGAACAATTCCGATCCCACACCGACCGTAGACCCTACGGCCCCCAATCCATCTCCTTCGACGTTTCCTTCTACGGCGCCGATTTCGTTTACGGCATCCCCGAACGTGCCGCAAGTCTTGCCCTAAAGCCCACCAGAGGCCCAAACGTCGACGAATCTGAGCCCTACCGCCTCTTCAACCTCGACGTCTTCGAGTACATCCACGATTCCCCTTTCGGCCTCTACGGTTCCATTCCCTTCATGGTTTCTCACGGGAAAGCCAGGGGAAGTTCCGGGTTTTTCTGGCTCAACGCCGCCGAGATGCAGATTGACGTTCTTGCCCCTGGCTGGGACGCCGAGTCCGGCATAGCGCTCCCTTCGCACCGAATCGACACGTTTTGGATGAGCGAGGCTGGTGTTGTGGACGCTTTCTTTTTCATCGGTCCGAACCCTAAGGATGTGCTGAGACAGTACACGGCGGTGACGGGAACTCCGGCGATGCCGCAGCTGTTTTCGATTGCGTACCACCAGTGCCGGTGGAATTATCGCGATGAGGAGGATGTTGAGCATGTGGATTCCAAGTTTGATGAGTTGGATATTCCTTATGATGTGTTGTGGCTTGACATTGAGCACACTGATGGGAAGAGGTATTTTACTTGGGATAGGGCTCTTTTCCCCCACCCTGAGGAGATGCAGAGGAAGTTGGCTTCTAAAGGGAGGCACATGGTGACCATTGTGGATCCTCACATTAAGCGGGACGAGAATTTTCATTTGCACAAGGAGGCCTCTCAGAAGGGGTATTATGTTAAGGATGCCAGTGGGAATGACTTTGATGGCTGGTGCTGGCCGGGTTCGTCATCATATCCGGATACTTTGAACCCGGAAATTAGGTCCTGGTGGGCTGATAAGTTCTCTTACCAGAGTTATGAGGGTTCCACGCCTTCTCTTTACATATGGAATGACATGAATGAACCTTCTGTCTTCAATGGGCCTGAGGTGACAATGCCTAGAGATGTTACACACTATGGAGGTGTGGAACATCGGGAGTTGCACAATGCCTATGGATATTACTTCCACATGGCGACCGCTAATGGGCTACTGAAGCGTGGTGAGGGGAATGACAGGCCATTTGTTTTATCAAGAGCATTATTTGCTGGAAGTCAAAGGTATGGAGCAGTTTGGACTGGGGATAACACTGCTGATTGGGATCACCTAAGAGTTTCTATCCCAATGGTTTTGACCCTTGGTCTTACTGGGATGTCATTCTCTGGTGCTGATATTGGTGGATTTTTTGGGAATCCTGAACCTGAGTTATTGGTTCGGTGGTATCAGCTAGGAGCTTACTATCCTTTCTTTAGGGCCCACGCCCATCACGACACAAAAAGACGAGAACCATGGTTGTTTGGAGAACGAAATACAGAATTGATTAAGGATGCAATACATGTTCGTTATGCACTTCTCCCGTATTTCTACACATTATTCAGGGAGGCTAACACTACAGGTGTTCCTGTGGTCCGTCCATTGTGGATGGAATTCCCATCTGATGAAGCTACTTTTAGCAATGACGAAACTTTCATGGTTGGGAGCAGTATTTTAGTTCAAGGGATCTATACAGAGCGAGCTAAGCATGCATCAGTCTATTTGCCTGGAAAACAATCCTGGTATGACCTAAGAACTGGAGCTGTGTACAAGGGAGGGGTGACACACAAGTTGGAGGTTACAGAGGAGAGCATTCCTGCTTTCCAGAGAGCTGGAACCATTATTGCAAGGAAAGACCGGTTTCGGCGAAGTTCCACTCAGATGGCAAATGATCCCTACACTCTGGTTGTAGCTCTGAATAGTTCCCAAGCAGCTGAGGGTGAACTCTACATAGATGATGGCAGCAGCTTTAATTTTCTGCAAGGGGGCTATATCCATAGACGATTTATTTTCTCGAATGGGAAACTTACTTCTATAGACCTGGCACCTGCTTCCAGTAGCAAGGGGCGTTATCCATCAGATGCTTTCATTGAGAGGATTATCCTGCTGGGACATGCTCCTAGCTCAAAAAATGCACTCATTGAGCCATCAAATCAAAAGGTTGATATTGAACTTGGCCCCCTTTGGGTTCTAAGGGCTCGTGCACCAGCTGTTACAACCATACGTAGACCTAATGTTCGTGTTGCAGAAGATTGGACTATAACAGTTATATAA
>Glyma04g38630.1 sequence type=predicted peptide gene model=Glyma04g38630 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MRNETLRLILLLLLCSHLHSVLSWKKEEFRTCHQTPFCKRARSRAPGSSSLIATDVTISHGDLTAKLTPKHDSQSETKPLLLTLSVYQRGILRLKIDEDPSLSPPKKRFEVPDVIVSEFPSTKLWLPKISSVENGLSSSVYLSDGHSAVLRHDPFELFIRDDSSGDRVISLNSHDLFDFEQLKHKSEDDNWEEQFRSHTDRRPYGPQSISFDVSFYGADFVYGIPERAASLALKPTRGPNVDESEPYRLFNLDVFEYIHDSPFGLYGSIPFMVSHGKARGSSGFFWLNAAEMQIDVLAPGWDAESGIALPSHRIDTFWMSEAGVVDAFFFIGPNPKDVLRQYTAVTGTPAMPQLFSIAYHQCRWNYRDEEDVEHVDSKFDELDIPYDVLWLDIEHTDGKRYFTWDRALFPHPEEMQRKLASKGRHMVTIVDPHIKRDENFHLHKEASQKGYYVKDASGNDFDGWCWPGSSSYPDTLNPEIRSWWADKFSYQSYEGSTPSLYIWNDMNEPSVFNGPEVTMPRDVTHYGGVEHRELHNAYGYYFHMATANGLLKRGEGNDRPFVLSRALFAGSQRYGAVWTGDNTADWDHLRVSIPMVLTLGLTGMSFSGADIGGFFGNPEPELLVRWYQLGAYYPFFRAHAHHDTKRREPWLFGERNTELIKDAIHVRYALLPYFYTLFREANTTGVPVVRPLWMEFPSDEATFSNDETFMVGSSILVQGIYTERAKHASVYLPGKQSWYDLRTGAVYKGGVTHKLEVTEESIPAFQRAGTIIARKDRFRRSSTQMANDPYTLVVALNSSQAAEGELYIDDGSSFNFLQGGYIHRRFIFSNGKLTSIDLAPASSSKGRYPSDAFIERIILLGHAPSSKNALIEPSNQKVDIELGPLWVLRARAPAVTTIRRPNVRVAEDWTITVI*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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