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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G63810 | AT | Annotation by Michelle Graham. TAIR10: beta-galactosidase 10 | chr5:25537242-25541315 FORWARD LENGTH=741 | SoyBase | E_val: 0 | ISS |
| GO:0005975 | GO-bp | Annotation by Michelle Graham. GO Biological Process: carbohydrate metabolic process | SoyBase | N/A | ISS |
| GO:0080167 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to karrikin | SoyBase | N/A | ISS |
| GO:0005576 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: extracellular region | SoyBase | N/A | ISS |
| GO:0005618 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cell wall | SoyBase | N/A | ISS |
| GO:0009505 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plant-type cell wall | SoyBase | N/A | ISS |
| GO:0003824 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: catalytic activity | SoyBase | N/A | ISS |
| GO:0004553 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: hydrolase activity, hydrolyzing O-glycosyl compounds | SoyBase | N/A | ISS |
| GO:0004565 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: beta-galactosidase activity | SoyBase | N/A | ISS |
| GO:0043169 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: cation binding | SoyBase | N/A | ISS |
| KOG0496 | KOG | Beta-galactosidase | JGI | ISS | |
| PTHR23421 | Panther | BETA-GALACTOSIDASE RELATED | JGI | ISS | |
| PTHR23421:SF34 | Panther | SUBFAMILY NOT NAMED | JGI | ISS | |
| PF01301 | PFAM | Glycosyl hydrolases family 35 | JGI | ISS | |
| PF02140 | PFAM | Galactose binding lectin domain | JGI | ISS | |
| UniRef100_D7SWF1 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Beta-galactosidase n=1 Tax=Vitis vinifera RepID=D7SWF1_VITVI | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI0000F35E94 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI0000F35E94 related cluster n=1 Tax=unknown RepID=UPI0000F35E94 | SoyBase | E_val: 0 | ISS |
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Glyma04g38590 not represented in the dataset |
Glyma04g38590 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma06g16420 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.04g208500 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma04g38590.1 sequence type=CDS gene model=Glyma04g38590 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAAACTGTGTTTACTTTTGGTGTTGTTGTTGGTCACATTCACAGTGGCCTTATCTGGGAATGTCAGCTACGACGGTCGCTCGCTTCTCATTGATGGCCAACGCAAGCTTCTTATCTCTGCTTCCATTCATTACCCACGCAGCGTTCCCGCGATGTGGCCTGGTCTCGTTCAAACAGCCAAGGAAGGAGGGGTGGATGTGATTGAAACCTATGTTTTTTGGAATGGCCATGAGCTTTCTCCAGGCAACTATTACTTTGGAGGAAGGTTTGATCTAGTCAAGTTTGCGAAGACTGTTCAGCAGGCTGGGATGTACTTGATTCTTCGAATAGGCCCATTTGTTGCTGCAGAATGGAATTTTGGTGGTGTACCGGTATGGCTGCATTATGTTCCAGGCACGGTATTCCGGACTTACAATCAGCCTTTTATGTATCATATGCAGAAGTTTACAACATACATAGTGAACCTTATGAAACAAGAGAAGCTTTTTGCTTCACAAGGGGGTCCCATAATCTTATCTCAGATAGAAAATGAATATGGGTACTATGAAAATTTTTATAAGGAGGATGGTAAGAAATATGCCTTGTGGGCTGCAAAGATGGCTGTTTCTCAAAATACAGGTGTCCCTTGGATAATGTGCCAACAATGGGATGCTCCAGATCCTGTGATTGATACATGCAATTCATTCTACTGTGACCAATTTACACCTACTTCTCCAAACAGGCCCAAAATTTGGACTGAGAACTGGCCTGGATGGTTTAAAACTTTTGGGGGAAGAGATCCTCACAGGCCAGCAGAAGATGTTGCATTTTCTGTTGCTCGTTTCTTCCAGAAAGGTGGAAGTGTACATAATTACTACATGTATCATGGAGGAACAAATTTTGGGCGTACAGCAGGTGGTCCATTCATTACTACAAGTTATGACTATGATGCCCCAGTAGATGAGTATGGGTTACCTAGACTTCCAAAATGGGGACATCTTAAGGAACTTCACAGAGCTATCAAGTTATGTGAGCACGTATTGCTTAATGGTAAATCAGTTAATATCTCCCTTGGTCCTTCTGTGGAGGCTGATGTCTATACTGACTCATCAGGAGCATGTGCGGCCTTTATTTCTAATGTTGATGATAAAAATGATAAGACAGTGGAATTTCGAAATGCATCATATCACTTGCCAGCTTGGTCAGTTAGCATTCTTCCTGATTGCAAGAATGTAGTATTCAACACAGCTAAGGTTACTTCCCAGACAAATGTAGTTGCAATGATTCCCGAGAGTTTGCAGCAATCAGATAAAGGTGTAAATTCTCTTAAATGGGACATAGTGAAGGAGAAGCCAGGAATCTGGGGGAAGGCAGACTTTGTCAAAAGTGGTTTTGTTGATCTCATCAATACTACCAAAGATACCACTGACTACCTGTGGCATACAACAAGTATATTTGTAAGTGAGAATGAAGAGTTCTTAAAGAAGGGAAGCAAACCAGTCCTTCTAATTGAATCCACAGGTCATGCTCTCCATGCTTTTGTGAACCAAGAATATCAAGGTACTGGTACTGGAAATGGTACACATTCACCATTCTCTTTTAAGAATCCCATCTCCCTGAGGGCAGGGAAAAATGAAATTGCTTTGTTGTGCTTGACCGTTGGCTTACAGACAGCAGGACCATTTTATGACTTCATAGGGGCAGGACTAACTAGTGTGAAGATCAAGGGACTGAAAAATGGGACAATAGACTTGTCTTCTTATGCCTGGACTTACAAGATTGGAGTGCAAGGAGAATATCTAAGGTTATACCAGGGAAATGGGTTGAATAAAGTGAACTGGACATCTACTTCAGAACCACAAAAAATGCAGCCATTGACATGGTACAAGGCAATTGTGGATGCTCCGCCTGGGGATGAACCAGTTGGATTGGATATGTTACATATGGGAAAGGGTCTAGCCTGGTTAAATGGAGAAGAAATAGGAAGATATTGGCCTAGGAAAAGTGAATTCAAGAGTGAAGACTGTGTGAAAGAATGCGATTACAGAGGCAAATTTAATCCTGACAAATGTGACACTGGTTGTGGAGAACCTACACAGAGATGGTACCATGTTCCACGATCTTGGTTCAAGCCATCTGGAAATATTCTTGTTCTTTTTGAGGAGAAAGGTGGAGATCCAGAAAAGATTAAGTTTGTGAGACGGAAAGTATCTGGAGCTTGTGCCCTTGTTGCTGAGGATTACCCCTCTGTTGGACTCCTTTCCCAGGGTGAAGATAAAATACAGAATAACAAAAACGTTCCTTTTGCCCATTTGACATGCCCCAGCAACACTCGTATATCTGCTGTGAAGTTTGCTAGCTTTGGAACCCCCTCTGGGTCATGTGGATCTTACCTCAAGGGAGATTGCCATGATCCCAATTCTAGCACAATTGTTGAGAAGGCATGCCTAAACAAAAACGACTGTGTCATAAAATTAACTGAAGAGAATTTCAAAACCAACTTGTGTCCTGGTTTATCAAGGAAACTTGCAGTGGAAGCAGTCTGTAGTTGA
>Glyma04g38590.1 sequence type=predicted peptide gene model=Glyma04g38590 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MKLCLLLVLLLVTFTVALSGNVSYDGRSLLIDGQRKLLISASIHYPRSVPAMWPGLVQTAKEGGVDVIETYVFWNGHELSPGNYYFGGRFDLVKFAKTVQQAGMYLILRIGPFVAAEWNFGGVPVWLHYVPGTVFRTYNQPFMYHMQKFTTYIVNLMKQEKLFASQGGPIILSQIENEYGYYENFYKEDGKKYALWAAKMAVSQNTGVPWIMCQQWDAPDPVIDTCNSFYCDQFTPTSPNRPKIWTENWPGWFKTFGGRDPHRPAEDVAFSVARFFQKGGSVHNYYMYHGGTNFGRTAGGPFITTSYDYDAPVDEYGLPRLPKWGHLKELHRAIKLCEHVLLNGKSVNISLGPSVEADVYTDSSGACAAFISNVDDKNDKTVEFRNASYHLPAWSVSILPDCKNVVFNTAKVTSQTNVVAMIPESLQQSDKGVNSLKWDIVKEKPGIWGKADFVKSGFVDLINTTKDTTDYLWHTTSIFVSENEEFLKKGSKPVLLIESTGHALHAFVNQEYQGTGTGNGTHSPFSFKNPISLRAGKNEIALLCLTVGLQTAGPFYDFIGAGLTSVKIKGLKNGTIDLSSYAWTYKIGVQGEYLRLYQGNGLNKVNWTSTSEPQKMQPLTWYKAIVDAPPGDEPVGLDMLHMGKGLAWLNGEEIGRYWPRKSEFKSEDCVKECDYRGKFNPDKCDTGCGEPTQRWYHVPRSWFKPSGNILVLFEEKGGDPEKIKFVRRKVSGACALVAEDYPSVGLLSQGEDKIQNNKNVPFAHLTCPSNTRISAVKFASFGTPSGSCGSYLKGDCHDPNSSTIVEKACLNKNDCVIKLTEENFKTNLCPGLSRKLAVEAVCS*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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