SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G33490 | AT | Annotation by Michelle Graham. TAIR10: Eukaryotic aspartyl protease family protein | chr4:16108781-16110679 REVERSE LENGTH=425 | SoyBase | E_val: 0 | ISS |
| GO:0006508 | GO-bp | Annotation by Michelle Graham. GO Biological Process: proteolysis | SoyBase | N/A | ISS |
| GO:0005576 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: extracellular region | SoyBase | N/A | ISS |
| GO:0004190 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: aspartic-type endopeptidase activity | SoyBase | N/A | ISS |
| KOG1339 | KOG | Aspartyl protease | JGI | ISS | |
| PTHR13683 | Panther | ASPARTYL PROTEASES | JGI | ISS | |
| PTHR13683:SF98 | Panther | CHLOROPLAST NUCLEIOD DNA-BINDING-RELATED | JGI | ISS | |
| PF00026 | PFAM | Eukaryotic aspartyl protease | JGI | ISS | |
| UniRef100_G7JC87 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Aspartic proteinase Asp1 n=1 Tax=Medicago truncatula RepID=G7JC87_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI0002339EEE | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI0002339EEE related cluster n=1 Tax=unknown RepID=UPI0002339EEE | SoyBase | E_val: 0 | ISS |
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Glyma04g38550 not represented in the dataset |
Glyma04g38550 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma06g16450 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.04g208200 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma04g38550.3 sequence type=transcript gene model=Glyma04g38550 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GTTAGCTAGAGAGCTATGACTTACGTTTTGATGTATTGAACCCTTTAAGCTCTTTATTATCATTCTGGTACATCTTGTACCAGTTTGAGGCTTTTAATAAATTTCATTTTGCCTCGTAACATGTCATATGAATTGAGATGAGATTGGAGGCTAGGCCCATCCTAGCAAATAAGATACATACACCACATCCACTATACAGACCCAGCAATGACTTAGTGCCCTGCAGGCATGCCCTCTGTGCATCCTTGCACCTCAGTGATAACTACGACTGTGAAGTCCCACATCAATGTGACTACGAAGTTCAGTATGCAGATCATTACTCATCCCTTGGTGTACTTCTCCATGATGTCTACACTCTCAACTTTACAAATGGAGTCCAACTCAAAGTTCGTATGGCACTTGGGTGTGGATATGATCAGATTTTTCCAGATCCTTCTCACCACCCATTAGATGGAATGCTTGGCCTTGGCAGGGGAAAAACCAGCTTGACATCACAGCTGAATAGTCAGGGTTTGGTAAGAAATGTGATTGGGCACTGTTTGAGTGCACAAGGAGGAGGGTATATCTTCTTTGGAGATGTGTATGATTCTTTTAGACTAACTTGGACTCCAATGTCATCCAGAGATTACAAACATTACTCAGTCGCAGGGGCAGCTGAACTCCTTTTTGGAGGGAAGAAAAGTGGGGTTGGAAATCTTCATGCTGTTTTTGACACTGGGAGTTCTTACACCTATTTTAACTCTTATGCTTACCAAGTACTAATTTCTTGGTTGAAGAAGGAATCAGGTGGAAAGCCCCTAAAAGAAGCACATGATGATCAAACTCTCCCTCTTTGTTGGCGTGGTAGAAGACCTTTCAGAAGCATATACGAAGTGAGAAAATACTTCAAGCCAATTGTGCTTAGTTTCACCAGCAACGGGAGAAGTAAAGCTCAATTTGAAATGCTTCCTGAAGCATATCTGATAGTATCAAACATGGGAAATGTTTGCTTGGGCATTCTAAACGGCTCTGAAGTAGGGATGGGGGATCTGAACCTAATCGGAGACATATCCATGCTAAACAAAGTGATGGTATTTGACAACGACAAGCAGTTGATTGGTTGGGCACCAGCAGATTGTGACCAGGTTCCAAAATCCAGAGATGTCAGCATTTGATCACAAAATATAACTCCTCCGCTCAATTTACACCTATATGATCATCAAATAGTAGCTATTAGGGTGGCTGTATAATACGAGTGTTAATCTGCTTGATTAGATAGCCATATGCTGTGTTTAATAGTAGTATATTGGCACGTGGTATAGAGGTCTACCCTGATTATTGCTGTTTATAATCTATATATTGGACTGGTTACACTTACTAAGTAACCAGCCATAAAAAATCATCATAGTACATTAGTTTGATTCCACGGCTTTGAGGATTTGATTTGGAATGGCAAAGCGAGGAGTCAAAAAAGAGTAATGCAGGTTGATGCAAATATTAGATGCATCTCTTGATTCTATAATTAATTATAGACAATTTTATAAACCGGATAGTTCCATAAACATTATCAACTTATTATTTTAGTAAATGGGCAGTTGATTTGTGTTTTGAATATTTTGATTATTTTACTGCAAGTTCTTTTCTTTTGGCATTGTTTCTGTTCTGTTCTGCCCATAACGACATTTACTTCAGAGATAAAGACAAAGTCATATATGGTACGAAGTGTCAAACATGT
>Glyma04g38550.2 sequence type=CDS gene model=Glyma04g38550 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAAGTCAGGGAAGTTGGGAATTTTGGTTCTGCTCGTCTTGTTCAGCTCTTCTACTTGTTCCGCTTGGTTTGGTAGTAAACACAAAAGTTCAAGTGGAAGGAGCTCCTTTCGTCCAGATGAAGCATCGTCATCGTCATCGTCGTCGTCGTCGTCACCATACATACTAAACCGTTTTCGTGCTGGCTCATCGGTCGTGTTCCCGGTTCACGGCAATGTTTACCCAGTTGGGTTTTATAATGTTACTCTCAACATCGGCCAACCACCCAGGCCATATTTTCTAGATATTGACACGGGTAGCGATCTCACCTGGCTTCAATGTGATGCCCCTTGTTCCCGTTGCTCTCAGACACCACATCCACTATACAGACCCAGCAATGACTTAGTGCCCTGCAGGCATGCCCTCTGTGCATCCTTGCACCTCAGTGATAACTACGACTGTGAAGTCCCACATCAATGTGACTACGAAGTTCAGTATGCAGATCATTACTCATCCCTTGGTGTACTTCTCCATGATGTCTACACTCTCAACTTTACAAATGGAGTCCAACTCAAAGTTCGTATGGCACTTGGGTGTGGATATGATCAGATTTTTCCAGATCCTTCTCACCACCCATTAGATGGAATGCTTGGCCTTGGCAGGGGAAAAACCAGCTTGACATCACAGCTGAATAGTCAGGGTTTGGTAAGAAATGTGATTGGGCACTGTTTGAGTGCACAAGGAGGAGGGTATATCTTCTTTGGAGATGTGTATGATTCTTTTAGACTAACTTGGACTCCAATGTCATCCAGAGATTACAAACATTACTCAGTCGCAGGGGCAGCTGAACTCCTTTTTGGAGGGAAGAAAAGTGGGGTTGGAAATCTTCATGCTGTTTTTGACACTGGGAGTTCTTACACCTATTTTAACTCTTATGCTTACCAAGTACTAATTTCTTGGTTGAAGAAGGAATCAGGTGGAAAGCCCCTAAAAGAAGCACATGATGATCAAACTCTCCCTCTTTGTTGGCGTGGTAGAAGACCTTTCAGAAGCATATACGAAGTGAGAAAATACTTCAAGCCAATTGTGCTTAGTTTCACCAGCAACGGGAGAAGTAAAGCTCAATTTGAAATGCTTCCTGAAGCATATCTGATAGTATCAAACATGGGAAATGTTTGCTTGGGCATTCTAAACGGCTCTGAAGTAGGGATGGGGGATCTGAACCTAATCGGAGACATATCCATGCTAAACAAAGTGATGGTATTTGACAACGACAAGCAGTTGATTGGTTGGGCACCAGCAGATTGTGACCAGGTTCCAAAATCCAGAGATGTCAGCATTTGA >Glyma04g38550.3 sequence type=CDS gene model=Glyma04g38550 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAGATTGGAGGCTAGGCCCATCCTAGCAAATAAGATACATACACCACATCCACTATACAGACCCAGCAATGACTTAGTGCCCTGCAGGCATGCCCTCTGTGCATCCTTGCACCTCAGTGATAACTACGACTGTGAAGTCCCACATCAATGTGACTACGAAGTTCAGTATGCAGATCATTACTCATCCCTTGGTGTACTTCTCCATGATGTCTACACTCTCAACTTTACAAATGGAGTCCAACTCAAAGTTCGTATGGCACTTGGGTGTGGATATGATCAGATTTTTCCAGATCCTTCTCACCACCCATTAGATGGAATGCTTGGCCTTGGCAGGGGAAAAACCAGCTTGACATCACAGCTGAATAGTCAGGGTTTGGTAAGAAATGTGATTGGGCACTGTTTGAGTGCACAAGGAGGAGGGTATATCTTCTTTGGAGATGTGTATGATTCTTTTAGACTAACTTGGACTCCAATGTCATCCAGAGATTACAAACATTACTCAGTCGCAGGGGCAGCTGAACTCCTTTTTGGAGGGAAGAAAAGTGGGGTTGGAAATCTTCATGCTGTTTTTGACACTGGGAGTTCTTACACCTATTTTAACTCTTATGCTTACCAAGTACTAATTTCTTGGTTGAAGAAGGAATCAGGTGGAAAGCCCCTAAAAGAAGCACATGATGATCAAACTCTCCCTCTTTGTTGGCGTGGTAGAAGACCTTTCAGAAGCATATACGAAGTGAGAAAATACTTCAAGCCAATTGTGCTTAGTTTCACCAGCAACGGGAGAAGTAAAGCTCAATTTGAAATGCTTCCTGAAGCATATCTGATAGTATCAAACATGGGAAATGTTTGCTTGGGCATTCTAAACGGCTCTGAAGTAGGGATGGGGGATCTGAACCTAATCGGAGACATATCCATGCTAAACAAAGTGATGGTATTTGACAACGACAAGCAGTTGATTGGTTGGGCACCAGCAGATTGTGACCAGGTTCCAAAATCCAGAGATGTCAGCATTTGA
>Glyma04g38550.2 sequence type=predicted peptide gene model=Glyma04g38550 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MKSGKLGILVLLVLFSSSTCSAWFGSKHKSSSGRSSFRPDEASSSSSSSSSSPYILNRFRAGSSVVFPVHGNVYPVGFYNVTLNIGQPPRPYFLDIDTGSDLTWLQCDAPCSRCSQTPHPLYRPSNDLVPCRHALCASLHLSDNYDCEVPHQCDYEVQYADHYSSLGVLLHDVYTLNFTNGVQLKVRMALGCGYDQIFPDPSHHPLDGMLGLGRGKTSLTSQLNSQGLVRNVIGHCLSAQGGGYIFFGDVYDSFRLTWTPMSSRDYKHYSVAGAAELLFGGKKSGVGNLHAVFDTGSSYTYFNSYAYQVLISWLKKESGGKPLKEAHDDQTLPLCWRGRRPFRSIYEVRKYFKPIVLSFTSNGRSKAQFEMLPEAYLIVSNMGNVCLGILNGSEVGMGDLNLIGDISMLNKVMVFDNDKQLIGWAPADCDQVPKSRDVSI* >Glyma04g38550.3 sequence type=predicted peptide gene model=Glyma04g38550 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MRLEARPILANKIHTPHPLYRPSNDLVPCRHALCASLHLSDNYDCEVPHQCDYEVQYADHYSSLGVLLHDVYTLNFTNGVQLKVRMALGCGYDQIFPDPSHHPLDGMLGLGRGKTSLTSQLNSQGLVRNVIGHCLSAQGGGYIFFGDVYDSFRLTWTPMSSRDYKHYSVAGAAELLFGGKKSGVGNLHAVFDTGSSYTYFNSYAYQVLISWLKKESGGKPLKEAHDDQTLPLCWRGRRPFRSIYEVRKYFKPIVLSFTSNGRSKAQFEMLPEAYLIVSNMGNVCLGILNGSEVGMGDLNLIGDISMLNKVMVFDNDKQLIGWAPADCDQVPKSRDVSI*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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