SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G63610 | AT | Annotation by Michelle Graham. TAIR10: cyclin-dependent kinase E;1 | chr5:25463645-25465057 REVERSE LENGTH=470 | SoyBase | E_val: 0 | ISS |
| GO:0000278 | GO-bp | Annotation by Michelle Graham. GO Biological Process: mitotic cell cycle | SoyBase | N/A | ISS |
| GO:0006468 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein phosphorylation | SoyBase | N/A | ISS |
| GO:0010440 | GO-bp | Annotation by Michelle Graham. GO Biological Process: stomatal lineage progression | SoyBase | N/A | ISS |
| GO:0042023 | GO-bp | Annotation by Michelle Graham. GO Biological Process: DNA endoreduplication | SoyBase | N/A | ISS |
| GO:0045736 | GO-bp | Annotation by Michelle Graham. GO Biological Process: negative regulation of cyclin-dependent protein kinase activity | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005515 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein binding | SoyBase | N/A | ISS |
| GO:0016301 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: kinase activity | SoyBase | N/A | ISS |
| KOG0666 | KOG | Cyclin C-dependent kinase CDK8 | JGI | ISS | |
| PTHR24056 | Panther | CELL DIVISION PROTEIN KINASE | JGI | ISS | |
| PTHR24056:SF83 | Panther | JGI | ISS | ||
| PF00069 | PFAM | Protein kinase domain | JGI | ISS | |
| UniRef100_G7J2M4 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Cyclin-dependent kinase E-1 n=1 Tax=Medicago truncatula RepID=G7J2M4_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_G7J2M4 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Cyclin-dependent kinase E-1 n=1 Tax=Medicago truncatula RepID=G7J2M4_MEDTR | SoyBase | E_val: 0 | ISS |
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Glyma04g38515 not represented in the dataset |
Glyma04g38515 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma06g16500 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.04g207900 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma04g38515.1 sequence type=CDS gene model=Glyma04g38515 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGAGACGACAGTGGCAGCAACCGGTCAAAGCCGGAGTGGCTGCAGCAGTATGATCTAATAGGGAAGATTGGAGAAGGCACCTACGGTCTCGTCTTCCTCGCTCGCATCAAGTCTTCCACCAATCGCGGAAAATCCATCGCCATAAAAAAATTCAAGCAATCCAAGGATGGCGATGGTGTCTCTCCCACCGCCATACGTGAAATCATGTTACTCAGGGAGATAACGCACGAGAATGTTGTGAAGCTTGTGAATGTTCACATTAATCATATGGACATGTCTCTCTATCTGGCTTTTGATTATGCAGAACACGACCTTTTTGAAATAATAAGACATCATAGGGACAAAGTCAATCAATCCATTAACCAGTATACTGTTAAATCGTTACTCTGGCAGTTGCTCAATGGACTAAACTATCTACACAGTAATTGGATAATACATCGGGACTTAAAGCCATCAAATATATTGGTTATGGGTGAAGGAGAGGAACATGGAGTTGTTAAAATTGCTGACTTTGGACTTGCAAGGATATATCAAGCACCTTTGAAGCCATTATCTGAAAATGGGGTTGTTGTTACTATTTGGTATCGTGCTCCTGAGTTGCTTCTTGGAGCAAAACATTATACCAGTGCTGTTGATATGTGGGCTGTGGGATGCATTTTTGCTGAGTTGTTGACTTTAAAGCCGCTATTCCAAGGTGCAGAAGTCAAAGCTACACCAAATCCCTTTCAGCTTGACCAACTTGACAAGATATTCAAGGTTTTAGGCCATCCCACATTAGAAAAGTGGCCTTCCTTAGCAAATCTTCCCCATTGGCAACAAGATTCACAACATATACAAGGACACAAATATGACAATGCTAGCCTATGTAGTGTTTTACAACTATCTCCAAAAAGTCCTGCATATGACCTCTTGTCAAAGATGCTTGAATATGATCCACGAAAGCGCATAACAGCAGCCCAAGCTTTGGAGCATGAGTATTTCAAAATTGAACCACTACCTGGGCGGAATGCACTTGTACCCTGCCAACCTGGAGACACATTTGTGAATTATCCCACACGTCCAGTGGATACAACAACAGATTTTGAAGGGACAGCCAACATGCAACCTTCACAGCCGGTTTCGTCTGGAGCTGCAGTTTCTGGCAACATGCCTGGTGGTCATGTTTCGAATAGATCTGTCCCTCGGCCAATGAATGTTGGTGGCATGCAGAGAATACCTCATCAGGCAATGCAGGGTTATAATCTCTCATCTCAGGCAGGGATGGGTGCTGGAATGAATCCTGGTGGCATCCCAATGCAACGAGGTGTTCCACAGCAACAGTTGAGAAGAAAAGATCAAATGGGTATGCCAGGATACCCTCCACAGCAGAAGTCAAGACGTATATAA
>Glyma04g38515.1 sequence type=predicted peptide gene model=Glyma04g38515 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGDDSGSNRSKPEWLQQYDLIGKIGEGTYGLVFLARIKSSTNRGKSIAIKKFKQSKDGDGVSPTAIREIMLLREITHENVVKLVNVHINHMDMSLYLAFDYAEHDLFEIIRHHRDKVNQSINQYTVKSLLWQLLNGLNYLHSNWIIHRDLKPSNILVMGEGEEHGVVKIADFGLARIYQAPLKPLSENGVVVTIWYRAPELLLGAKHYTSAVDMWAVGCIFAELLTLKPLFQGAEVKATPNPFQLDQLDKIFKVLGHPTLEKWPSLANLPHWQQDSQHIQGHKYDNASLCSVLQLSPKSPAYDLLSKMLEYDPRKRITAAQALEHEYFKIEPLPGRNALVPCQPGDTFVNYPTRPVDTTTDFEGTANMQPSQPVSSGAAVSGNMPGGHVSNRSVPRPMNVGGMQRIPHQAMQGYNLSSQAGMGAGMNPGGIPMQRGVPQQQLRRKDQMGMPGYPPQQKSRRI*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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