SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G08710 | AT | Annotation by Michelle Graham. TAIR10: Regulator of chromosome condensation (RCC1) family protein | chr5:2834858-2837866 REVERSE LENGTH=434 | SoyBase | E_val: 0 | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0003682 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: chromatin binding | SoyBase | N/A | ISS |
| GO:0008536 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: Ran GTPase binding | SoyBase | N/A | ISS |
| KOG1427 | KOG | Uncharacterized conserved protein, contains RCC1 domain | JGI | ISS | |
| PTHR22870 | Panther | REGULATOR OF CHROMOSOME CONDENSATION | JGI | ISS | |
| PTHR22870:SF26 | Panther | UVB-RESISTANCE PROTEIN UVR8-RELATED | JGI | ISS | |
| PF00415 | PFAM | Regulator of chromosome condensation (RCC1) repeat | JGI | ISS | |
| UniRef100_B9RPD5 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Williams-Beuren syndrome chromosome region 16 protein, putative n=1 Tax=Ricinus communis RepID=B9RPD5_RICCO | SoyBase | E_val: 6.00E-144 | ISS |
| UniRef100_I1JXW8 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JXW8_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma04g38420 not represented in the dataset |
Glyma04g38420 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma06g16620 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.04g206900 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma04g38420.3 sequence type=transcript gene model=Glyma04g38420 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high AAGAATATCAAGAAATTGAGAAAATTTTACTAGTGGGGTTGATTTCTAGCAGGGAGCAGGAGGGTTAAAATGGTAAATTAGGTTCAGCATCTCTACAATCGTCTACACGCAACTAACCGCCATTACAAGAACAACATAGCAGACGTTGCAACAGCGTGAGCCATGAAATGTTTTTCTTTGCTCTCTCTCTCTTCAATGTATTGATTTAATTGTTCAACTGCATTGATTCGCTTCATGATTCTTCCTCACCCCAACAACGGAACAACCTCCTTCTTCACCCTTCTCCACCAATCACCTTTTCCTCTCAGGACAAATGTTGCGCCGAAGCTTCTCGAAGCTCCACCTCAGTCTCAGAGCTCCGGGTTTAGGGTTTCCGACGCGATCGTTCTCGCGCGACGCCGGGAAGAGGTTCGCGGCATTGTGGGGGAACGGTGATTACGGGAGATTGGGTCTTGGCAACTTGGATTCGCAATGGAAACCCGTTGTCTGCCCCGCGTTCCGCAACAAAACCCTAAATGCCATTGCTTGTGGCGGTGCTCACACCCTCTTCTTAACAGAGGATGGATGCGTTTATGCTACTGGTCTTAATGATTTTGGACAGCTTGGTGTATCAGAAAGTAAACACTACTCGGTGGAGCCACTTTGTGTTTTTGGAGAGGAGAAGAAAGTTGTGCAGATCTCTGCTGGTTATAATCATTCTTGTGCGATTACAGTGGATGGAGAGCTATACATGTGGGGAAAGAACACAAGCGGGCAGCTTGGACTAGGAAAAAGGGCTCCAAACATAGTGCCTTTGCCAACTAAAGTGGAATACTTGAAGGGAATCAACATTAAAATGGCAGCTCTGGGTTCAGAGCACTCAGTGGCTATTAGTGATGGTGGAGCGGCCTTTAGTTGGGGAATTGGAGTGTCCGGTAGACTTGGTCATGGTCATGAGTCAAGCGTCCTAGGATTCTTCAAAAGTTACAGTGAGTATACCCCAAGGCTTATAAAGGATCTTGAAGGAATCAAGGTAAAATACGTAGCTGCTGGGTTGCTAAATTCAGCTTGTACTGATGAAAACGGTTGTGTTTTTGTATTTGGTGAAAGAGGAATTGAAAAATTGCGTTTAAAGGAGATGAGCGATGCAACAAAACCATCCTTGATCAGTGAACTTCCATCCTCAAAAGAAGTTGCTTGTGGTGGCTACCACACCTGTGTCCTGACAAATTCTGGTGAGCTTTATACTTGGGGTTCAAATGAAAATGGCTGCCTTGGTATTGGTTCCTCAGATGTCATTCATCTACCTGAAAAGGTTCAAGGGCCATTCTTGAAGTCTTCTGTTAGCCAGGTTTCTTGTGGTTGGAAGCATACTGCAGCCATTTCTGAAGGAAGAGTGTTCACGTGGGGCTGGGGAGGTTCCAATGGGACATTCTCTGAAGTTGGACATTCTTCTAGTGGACAATTGGGTCATGGAAGTGATGTGGATTACATAAATCCTACAAGAGTTTGCTTTGGAGAAGATGTGAAAGCATTGCAAGTTTCATGTGGGTTCAATCATACAGGTGCTATACTTGAATATGCATAGGTTGGCTGCTCCAATAATTCATAATTATTGGTAATTCTTCAAGAAAGATTCAGAATGTGATTCATCTCTTCATGTATCTTCTACACATCACCATGCATATCTTCTAATCCAGGTGGTTGCAGCATGCCCCAATTGAAGCATATATTATCTATCTGTTGTATTATACCATTTTTTTTCTCAGGAATATATATACACACAAAAATAAAGCTTCCAGAGATGTACAATACTTGTGTAAAGAAAGAGCAAAGACAACTGCTTCAAATAAATAATGCAAGGGAATGACAGCAGAGAATGAGATAAGGGGGGAAATTGTTCCTAGGTTTATTATTATTTTTGGTTAGCTGAGTTAATACTACTTACTACAGAAACAGGTAAATGCTTATGTCATTTGCTCTTCTTCTAGAATTATTTAAAGTAACTCGTCAGTTGGCGTTGCAATTATATGAGCCTATATGTCTTGCTATTTGTCACCCCATGCGCGGATACTTTTCCAGCATCATAATTGTAAAGCTTTTAGAGATTCTCAGTGATTTATGGTTCTTCTGCAATCTACCACTGAAGGCATTACATCCATCAAATATGATGCATATGGGAATGAGAATCCCAATAACATGGTAAAGCGGTGAGGTAGTTTTC
>Glyma04g38420.2 sequence type=CDS gene model=Glyma04g38420 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTTGCGCCGAAGCTTCTCGAAGCTCCACCTCAGTCTCAGAGCTCCGGGTTTAGGGTTTCCGACGCGATCGTTCTCGCGCGACGCCGGGAAGAGGTTCGCGGCATTGTGGGGGAACGGTGATTACGGGAGATTGGGTCTTGGCAACTTGGATTCGCAATGGAAACCCGTTGTCTGCCCCGCGTTCCGCAACAAAACCCTAAATGCCATTGCTTGTGGCGGTGCTCACACCCTCTTCTTAACAGAGGATGGATGCGTTTATGCTACTGGTCTTAATGATTTTGGACAGCTTGGTGTATCAGAAAGTAAACACTACTCGGTGGAGCCACTTTGTGTTTTTGGAGAGGAGAAGAAAGTTGTGCAGATCTCTGCTGGTTATAATCATTCTTGTGCGATTACAGTGGATGGAGAGCTATACATGTGGGGAAAGAACACAAGCGGGCAGCTTGGACTAGGAAAAAGGGCTCCAAACATAGTGCCTTTGCCAACTAAAGTGGAATACTTGAAGGGAATCAACATTAAAATGGCAGCTCTGGGTTCAGAGCACTCAGTGGCTATTAGTGATGGTGGAGCGGCCTTTAGTTGGGGAATTGGAGTGTCCGGTAGACTTGGTCATGGTCATGAGTCAAGCGTCCTAGGATTCTTCAAAAGTTACAGTGAGTATACCCCAAGGCTTATAAAGGATCTTGAAGGAATCAAGGTAAAATACGTAGCTGCTGGGTTGCTAAATTCAGCTTGTACTGATGAAAACGGTTGTGTTTTTGTATTTGGTGAAAGAGGAATTGAAAAATTGCGTTTAAAGGAGATGAGCGATGCAACAAAACCATCCTTGATCAGTGAACTTCCATCCTCAAAAGAAGTTGCTTGTGGTGGCTACCACACCTGTGTCCTGACAAATTCTGGTGAGCTTTATACTTGGGGTTCAAATGAAAATGGCTGCCTTGGTATTGGTTCCTCAGATGTCATTCATCTACCTGAAAAGGTTCAAGGGCCATTCTTGAAGTCTTCTGTTAGCCAGGTTTCTTGTGGTTGGAAGCATACTGCAGCCATTTCTGAAGGAAGAGTGTTCACGTGGGGCTGGGGAGGTTCCAATGGGACATTCTCTGAAGTTGGACATTCTTCTAGTGGACAATTGGGTCATGGAAGTGATGTGGATTACATAAATCCTACAAGAGTTTGCTTTGGAGAAGATGTGAAAGCATTGCAAGTTTCATGTGGGTTCAATCATACAGGTGCTATACTTGAATATGCATAG >Glyma04g38420.3 sequence type=CDS gene model=Glyma04g38420 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTTGCGCCGAAGCTTCTCGAAGCTCCACCTCAGTCTCAGAGCTCCGGGTTTAGGGTTTCCGACGCGATCGTTCTCGCGCGACGCCGGGAAGAGGTTCGCGGCATTGTGGGGGAACGGTGATTACGGGAGATTGGGTCTTGGCAACTTGGATTCGCAATGGAAACCCGTTGTCTGCCCCGCGTTCCGCAACAAAACCCTAAATGCCATTGCTTGTGGCGGTGCTCACACCCTCTTCTTAACAGAGGATGGATGCGTTTATGCTACTGGTCTTAATGATTTTGGACAGCTTGGTGTATCAGAAAGTAAACACTACTCGGTGGAGCCACTTTGTGTTTTTGGAGAGGAGAAGAAAGTTGTGCAGATCTCTGCTGGTTATAATCATTCTTGTGCGATTACAGTGGATGGAGAGCTATACATGTGGGGAAAGAACACAAGCGGGCAGCTTGGACTAGGAAAAAGGGCTCCAAACATAGTGCCTTTGCCAACTAAAGTGGAATACTTGAAGGGAATCAACATTAAAATGGCAGCTCTGGGTTCAGAGCACTCAGTGGCTATTAGTGATGGTGGAGCGGCCTTTAGTTGGGGAATTGGAGTGTCCGGTAGACTTGGTCATGGTCATGAGTCAAGCGTCCTAGGATTCTTCAAAAGTTACAGTGAGTATACCCCAAGGCTTATAAAGGATCTTGAAGGAATCAAGGTAAAATACGTAGCTGCTGGGTTGCTAAATTCAGCTTGTACTGATGAAAACGGTTGTGTTTTTGTATTTGGTGAAAGAGGAATTGAAAAATTGCGTTTAAAGGAGATGAGCGATGCAACAAAACCATCCTTGATCAGTGAACTTCCATCCTCAAAAGAAGTTGCTTGTGGTGGCTACCACACCTGTGTCCTGACAAATTCTGGTGAGCTTTATACTTGGGGTTCAAATGAAAATGGCTGCCTTGGTATTGGTTCCTCAGATGTCATTCATCTACCTGAAAAGGTTCAAGGGCCATTCTTGAAGTCTTCTGTTAGCCAGGTTTCTTGTGGTTGGAAGCATACTGCAGCCATTTCTGAAGGAAGAGTGTTCACGTGGGGCTGGGGAGGTTCCAATGGGACATTCTCTGAAGTTGGACATTCTTCTAGTGGACAATTGGGTCATGGAAGTGATGTGGATTACATAAATCCTACAAGAGTTTGCTTTGGAGAAGATGTGAAAGCATTGCAAGTTTCATGTGGGTTCAATCATACAGGTGCTATACTTGAATATGCATAG
>Glyma04g38420.2 sequence type=predicted peptide gene model=Glyma04g38420 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MLRRSFSKLHLSLRAPGLGFPTRSFSRDAGKRFAALWGNGDYGRLGLGNLDSQWKPVVCPAFRNKTLNAIACGGAHTLFLTEDGCVYATGLNDFGQLGVSESKHYSVEPLCVFGEEKKVVQISAGYNHSCAITVDGELYMWGKNTSGQLGLGKRAPNIVPLPTKVEYLKGINIKMAALGSEHSVAISDGGAAFSWGIGVSGRLGHGHESSVLGFFKSYSEYTPRLIKDLEGIKVKYVAAGLLNSACTDENGCVFVFGERGIEKLRLKEMSDATKPSLISELPSSKEVACGGYHTCVLTNSGELYTWGSNENGCLGIGSSDVIHLPEKVQGPFLKSSVSQVSCGWKHTAAISEGRVFTWGWGGSNGTFSEVGHSSSGQLGHGSDVDYINPTRVCFGEDVKALQVSCGFNHTGAILEYA* >Glyma04g38420.3 sequence type=predicted peptide gene model=Glyma04g38420 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MLRRSFSKLHLSLRAPGLGFPTRSFSRDAGKRFAALWGNGDYGRLGLGNLDSQWKPVVCPAFRNKTLNAIACGGAHTLFLTEDGCVYATGLNDFGQLGVSESKHYSVEPLCVFGEEKKVVQISAGYNHSCAITVDGELYMWGKNTSGQLGLGKRAPNIVPLPTKVEYLKGINIKMAALGSEHSVAISDGGAAFSWGIGVSGRLGHGHESSVLGFFKSYSEYTPRLIKDLEGIKVKYVAAGLLNSACTDENGCVFVFGERGIEKLRLKEMSDATKPSLISELPSSKEVACGGYHTCVLTNSGELYTWGSNENGCLGIGSSDVIHLPEKVQGPFLKSSVSQVSCGWKHTAAISEGRVFTWGWGGSNGTFSEVGHSSSGQLGHGSDVDYINPTRVCFGEDVKALQVSCGFNHTGAILEYA*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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